1OK9A

Decay accelerating factor (cd55): the structure of an intact human complement regulator.
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
254
structure length
254
Chain Sequence
MQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRGC

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII2 (24-27)S1 (3-4)S3 (23-24)O1 (4-49)S7 (54-55)S2 (13-15)TII1 (10-13)TII3 (34-37)S4 (27-33)TI'1 (17-20)S6 (46-50)S5 (37-39)S8 (62-64)O2 (33-62)TIV1 (40-43)O3 (66-113)S13 (118-119)S9 (75-77)TIV4 (98-101)S10 (91-97)TVIa1 (78-81)3H1 (81-83)TII5 (88-91)S12 (110-114)S11 (101-103)S14 (126-128)TVIII1 (124-127)TIV5 (104-107)O4 (97-126)TI1 (114-117)TII7 (149-152)TII'1 (175-178)O5 (131-172)S19 (178-181)S15 (140-143)TII6 (137-140)TII8 (159-162)S20 (187-190)S18 (169-175)S16 (152-158)S17 (162-165)TVIII2 (181-184)S21 (192-193)S23 (211-212)O7 (193-235)S27 (241-244)S24 (215-221)TII11 (222-225)TII9 (199-202)S28 (250-252)TVIII3 (208-211)S26 (232-238)TII10 (212-215)TIV8 (230-233)O8 (221-251)TIV3 (72-75)S25 (226-228)S22 (202-205)Updating...
connected with : NaN
molecule tags Regulator of complement pathway
source organism Homo sapiens
publication title Complement Regulation at the Molecular Level: The Structure of Decay-Accelerating Factor
pubmed doi rcsb
molecule keywords COMPLEMENT DECAY-ACCELERATING FACTOR
total genus 36
structure length 254
sequence length 254
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-07-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok9A04
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok9A03
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok9A01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1ok9A02
3OP8A 1H03P 1G4GA 2V8EA 3ERBA 4A5WB 4F4OC 3R62A 2G7IA 1TPGA 2A55A 3SW0X 1Q3XA 2YBYA 4AYEA 2JGXA 2RLPA 3GXEA 2LOJA 2UWNA 3RJ3D 4KKDA 2O39C 3EJHA 1O9AA 4JHSA 5HYTB 2W80A 1OK9A 3IX0A 2XRBA 2JGWA 1OK2A 1ELVA 3ZRZA 2XRDA 1HCCA 1H2QP 1Z92B 1GKGA 3L89M 4LOSA 4ZH1D 5JPMG 1H04P 2RKZA 2XWJI 2WIIC 2RL0A 1GHQB 5FO8C 1TPMA 1SRZA 2W81A 5HYPA 3OEDC 4CSYA 1OJVA 1MD8A 3KXVA 1QUBA 4FXGG 1E5GA 2QY0A 1C1ZA 1HFIA 3M7PA 4DJZA 3NFPI 1HFHA 3T5OA 2RLQA 2CG7A 1GPZA 5HZPB 1QO6A 1E8BA 2IZ3A 4ONTD 3OXUD 4C16A 2YRAA 4YNXA 2XWBF 4MUCA 3GOVA 2CKUA 3O8EB 1GKNA 4J38B 3ZD1A 3TVJA 2RKYA 1ZJKA 1PPQA 2KRIA 1H2PP 2KMSA 4IGDA 2B5ID 2CG6A 4B2SA 2MCZA 1SS2A 4PZ5A 5HYUB 1LY2A 2JRAA 3CALA 4AYDA 4WJG2 1OJWA 1QGBA 2EHFA 1NWVA 1VVDA 2XQWC 1CKLA 1OJYA 5I0QB 1OK3A 1U5MA 4LOTA 1FBRA 3IU3I 1OK1A 2BZMA 2MCYA 4AYMA 1E88A 3INBC 2IZ4A 4AYIA 2EC3A 1MD7A 4B2RA 1G4FA 3ZD2A 3MQLA 1TPNA 3KZJA 1UOTP 4K12A 1VVCA 2ERJA
chains in the Genus database with same CATH superfamily
3OP8A 1H03P 1G4GA 2V8EA 3ERBA 4A5WB 4APLA 4F4OC 1RLHA 3R62A 2G7IA 1TPGA 2A55A 3SW0X 3ZLEA 1Q3XA 2YBYA 4AYEA 3NJAA 2X2ZA 2JGXA 2RLPA 2Y8RA 3GXEA 2LOJA 2UWNA 4PO7A 3RJ3D 4KKDA 2O39C 3EJHA 1O9AA 4JHSA 5HYTB 2W80A 3FGTA 1OK9A 3IX0A 2XRBA 2JGWA 1OK2A 1ELVA 3ZRZA 2XRDA 1HCCA 1H2QP 1Z92B 1GKGA 3L89M 4LOSA 4ZH1D 5JPMG 1H04P 4N7EA 5DN4A 2RKZA 2XWJI 2WIIC 3CI0J 2RL0A 1GHQB 5FO8C 1TPMA 1SRZA 2W81A 5HYPA 3OEDC 4CSYA 1OJVA 1MD8A 3KXVA 5DN5A 2Y8TA 1QUBA 4FXGG 1E5GA 4MSLA 2QY0A 4BWCA 1C1ZA 1HFIA 3M7PA 4DJZA 3F6KA 3NFPI 1HFHA 3T5OA 2I2LA 2RLQA 2CG7A 1GPZA 5HZPB 1QO6A 1E8BA 2IZ3A 4ONTD 3OXUD 4C16A 2YRAA 4YNXA 2XWBF 4MUCA 3GOVA 2CKUA 3O8EB 1GKNA 4J38B 3ZD1A 3TVJA 2RKYA 1ZJKA 1PPQA 2KRIA 3K3TA 1H2PP 2KMSA 2ZYCA 4IGDA 2B5ID 2CG6A 3WSYA 4B2SA 2MCZA 1SS2A 4PZ5A 5HYUB 2Y8SA 1LY2A 3VWOA 2JRAA 3CALA 4AYDA 4WJG2 1OJWA 1QGBA 2EHFA 1NWVA 1VVDA 2XQWC 3WSXA 1CKLA 1OJYA 3ZLDA 5I0QB 1OK3A 1U5MA 4LOTA 1FBRA 3IU3I 1OK1A 2BZMA 2MCYA 4AYMA 1E88A 3INBC 2IZ4A 4AYIA 2EC3A 1MD7A 4B2RA 1G4FA 3ZD2A 3MQLA 4YIZA 3FGRA 1TPNA 3KZJA 1UOTP 4K12A 1VVCA 2ERJA
chains in the Genus database with same CATH topology
3OP8A 1H03P 1G4GA 2V8EA 3ERBA 4A5WB 4F4OC 3R62A 2G7IA 1TPGA 2A55A 3SW0X 1Q3XA 2YBYA 4AYEA 2JGXA 2RLPA 3GXEA 2LOJA 2UWNA 3RJ3D 4KKDA 2O39C 3EJHA 1O9AA 4JHSA 5HYTB 2W80A 1OK9A 3IX0A 2XRBA 2JGWA 1OK2A 1ELVA 3ZRZA 2XRDA 1HCCA 1H2QP 1Z92B 1GKGA 3L89M 4LOSA 4ZH1D 5JPMG 1H04P 2RKZA 2XWJI 2WIIC 2RL0A 1GHQB 5FO8C 1TPMA 1SRZA 2W81A 5HYPA 3OEDC 4CSYA 1OJVA 1MD8A 3KXVA 1QUBA 4FXGG 1E5GA 2QY0A 1C1ZA 1HFIA 3M7PA 4DJZA 3NFPI 1HFHA 3T5OA 2RLQA 2CG7A 1GPZA 5HZPB 1QO6A 1E8BA 2IZ3A 4ONTD 3OXUD 4C16A 2YRAA 4YNXA 2XWBF 4MUCA 3GOVA 2CKUA 3O8EB 1GKNA 4J38B 3ZD1A 3TVJA 2RKYA 1ZJKA 1PPQA 2KRIA 1H2PP 2KMSA 4IGDA 2B5ID 2CG6A 4B2SA 2MCZA 1SS2A 4PZ5A 5HYUB 1LY2A 2JRAA 3CALA 4AYDA 4WJG2 1OJWA 1QGBA 2EHFA 1NWVA 1VVDA 2XQWC 1CKLA 1OJYA 5I0QB 1OK3A 1U5MA 4LOTA 1FBRA 3IU3I 1OK1A 2BZMA 2MCYA 4AYMA 1E88A 3INBC 2IZ4A 4AYIA 2EC3A 1MD7A 4B2RA 1G4FA 3ZD2A 3MQLA 1TPNA 3KZJA 1UOTP 4K12A 1VVCA 2ERJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OP8 A;  1H03 P;  1G4G A;  2V8E A;  3ERB A;  4A5W B;  4F4O C;  3R62 A;  2G7I A;  1TPG A;  2A55 A;  3SW0 X;  1Q3X A;  2YBY A;  4AYE A;  2JGX A;  2RLP A;  3GXE A;  2LOJ A;  2UWN A;  3RJ3 D;  4KKD A;  2O39 C;  3EJH A;  1O9A A;  4JHS A;  5HYT B;  2W80 A;  1OK9 A;  3IX0 A;  2XRB A;  2JGW A;  1OK2 A;  1ELV A;  3ZRZ A;  2XRD A;  1HCC A;  1H2Q P;  1Z92 B;  1GKG A;  3L89 M;  4LOS A;  4ZH1 D;  5JPM G;  1H04 P;  2RKZ A;  2XWJ I;  2WII C;  2RL0 A;  1GHQ B;  5FO8 C;  1TPM A;  1SRZ A;  2W81 A;  5HYP A;  3OED C;  4CSY A;  1OJV A;  1MD8 A;  3KXV A;  1QUB A;  4FXG G;  1E5G A;  2QY0 A;  1C1Z A;  1HFI A;  3M7P A;  4DJZ A;  3NFP I;  1HFH A;  3T5O A;  2RLQ A;  2CG7 A;  1GPZ A;  5HZP B;  1QO6 A;  1E8B A;  2IZ3 A;  4ONT D;  3OXU D;  4C16 A;  2YRA A;  4YNX A;  2XWB F;  4MUC A;  3GOV A;  2CKU A;  3O8E B;  1GKN A;  4J38 B;  3ZD1 A;  3TVJ A;  2RKY A;  1ZJK A;  1PPQ A;  2KRI A;  1H2P P;  2KMS A;  4IGD A;  2B5I D;  2CG6 A;  4B2S A;  2MCZ A;  1SS2 A;  4PZ5 A;  5HYU B;  1LY2 A;  2JRA A;  3CAL A;  4AYD A;  4WJG 2;  1OJW A;  1QGB A;  2EHF A;  1NWV A;  1VVD A;  2XQW C;  1CKL A;  1OJY A;  5I0Q B;  1OK3 A;  1U5M A;  4LOT A;  1FBR A;  3IU3 I;  1OK1 A;  2BZM A;  2MCY A;  4AYM A;  1E88 A;  3INB C;  2IZ4 A;  4AYI A;  2EC3 A;  1MD7 A;  4B2R A;  1G4F A;  3ZD2 A;  3MQL A;  1TPN A;  3KZJ A;  1UOT P;  4K12 A;  1VVC A;  2ERJ A; 
#chains in the Genus database with same CATH topology
 3OP8 A;  1H03 P;  1G4G A;  2V8E A;  3ERB A;  4A5W B;  4APL A;  4F4O C;  1RLH A;  3R62 A;  2G7I A;  1TPG A;  2A55 A;  3SW0 X;  3ZLE A;  1Q3X A;  2YBY A;  4AYE A;  3NJA A;  2X2Z A;  2JGX A;  2RLP A;  2Y8R A;  3GXE A;  2LOJ A;  2UWN A;  4PO7 A;  3RJ3 D;  4KKD A;  2O39 C;  3EJH A;  1O9A A;  4JHS A;  5HYT B;  2W80 A;  3FGT A;  1OK9 A;  3IX0 A;  2XRB A;  2JGW A;  1OK2 A;  1ELV A;  3ZRZ A;  2XRD A;  1HCC A;  1H2Q P;  1Z92 B;  1GKG A;  3L89 M;  4LOS A;  4ZH1 D;  5JPM G;  1H04 P;  4N7E A;  5DN4 A;  2RKZ A;  2XWJ I;  2WII C;  3CI0 J;  2RL0 A;  1GHQ B;  5FO8 C;  1TPM A;  1SRZ A;  2W81 A;  5HYP A;  3OED C;  4CSY A;  1OJV A;  1MD8 A;  3KXV A;  5DN5 A;  2Y8T A;  1QUB A;  4FXG G;  1E5G A;  4MSL A;  2QY0 A;  4BWC A;  1C1Z A;  1HFI A;  3M7P A;  4DJZ A;  3F6K A;  3NFP I;  1HFH A;  3T5O A;  2I2L A;  2RLQ A;  2CG7 A;  1GPZ A;  5HZP B;  1QO6 A;  1E8B A;  2IZ3 A;  4ONT D;  3OXU D;  4C16 A;  2YRA A;  4YNX A;  2XWB F;  4MUC A;  3GOV A;  2CKU A;  3O8E B;  1GKN A;  4J38 B;  3ZD1 A;  3TVJ A;  2RKY A;  1ZJK A;  1PPQ A;  2KRI A;  3K3T A;  1H2P P;  2KMS A;  2ZYC A;  4IGD A;  2B5I D;  2CG6 A;  3WSY A;  4B2S A;  2MCZ A;  1SS2 A;  4PZ5 A;  5HYU B;  2Y8S A;  1LY2 A;  3VWO A;  2JRA A;  3CAL A;  4AYD A;  4WJG 2;  1OJW A;  1QGB A;  2EHF A;  1NWV A;  1VVD A;  2XQW C;  3WSX A;  1CKL A;  1OJY A;  3ZLD A;  5I0Q B;  1OK3 A;  1U5M A;  4LOT A;  1FBR A;  3IU3 I;  1OK1 A;  2BZM A;  2MCY A;  4AYM A;  1E88 A;  3INB C;  2IZ4 A;  4AYI A;  2EC3 A;  1MD7 A;  4B2R A;  1G4F A;  3ZD2 A;  3MQL A;  4YIZ A;  3FGR A;  1TPN A;  3KZJ A;  1UOT P;  4K12 A;  1VVC A;  2ERJ A; 
#chains in the Genus database with same CATH homology
 3OP8 A;  1H03 P;  1G4G A;  2V8E A;  3ERB A;  4A5W B;  4F4O C;  3R62 A;  2G7I A;  1TPG A;  2A55 A;  3SW0 X;  1Q3X A;  2YBY A;  4AYE A;  2JGX A;  2RLP A;  3GXE A;  2LOJ A;  2UWN A;  3RJ3 D;  4KKD A;  2O39 C;  3EJH A;  1O9A A;  4JHS A;  5HYT B;  2W80 A;  1OK9 A;  3IX0 A;  2XRB A;  2JGW A;  1OK2 A;  1ELV A;  3ZRZ A;  2XRD A;  1HCC A;  1H2Q P;  1Z92 B;  1GKG A;  3L89 M;  4LOS A;  4ZH1 D;  5JPM G;  1H04 P;  2RKZ A;  2XWJ I;  2WII C;  2RL0 A;  1GHQ B;  5FO8 C;  1TPM A;  1SRZ A;  2W81 A;  5HYP A;  3OED C;  4CSY A;  1OJV A;  1MD8 A;  3KXV A;  1QUB A;  4FXG G;  1E5G A;  2QY0 A;  1C1Z A;  1HFI A;  3M7P A;  4DJZ A;  3NFP I;  1HFH A;  3T5O A;  2RLQ A;  2CG7 A;  1GPZ A;  5HZP B;  1QO6 A;  1E8B A;  2IZ3 A;  4ONT D;  3OXU D;  4C16 A;  2YRA A;  4YNX A;  2XWB F;  4MUC A;  3GOV A;  2CKU A;  3O8E B;  1GKN A;  4J38 B;  3ZD1 A;  3TVJ A;  2RKY A;  1ZJK A;  1PPQ A;  2KRI A;  1H2P P;  2KMS A;  4IGD A;  2B5I D;  2CG6 A;  4B2S A;  2MCZ A;  1SS2 A;  4PZ5 A;  5HYU B;  1LY2 A;  2JRA A;  3CAL A;  4AYD A;  4WJG 2;  1OJW A;  1QGB A;  2EHF A;  1NWV A;  1VVD A;  2XQW C;  1CKL A;  1OJY A;  5I0Q B;  1OK3 A;  1U5M A;  4LOT A;  1FBR A;  3IU3 I;  1OK1 A;  2BZM A;  2MCY A;  4AYM A;  1E88 A;  3INB C;  2IZ4 A;  4AYI A;  2EC3 A;  1MD7 A;  4B2R A;  1G4F A;  3ZD2 A;  3MQL A;  1TPN A;  3KZJ A;  1UOT P;  4K12 A;  1VVC A;  2ERJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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