1YISA

Structural genomics of caenorhabditis elegans: adenylosuccinate lyase
Total Genus 159
50100150200250300350400020406080100120140160
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
159
sequence length
467
structure length
421
Chain Sequence
ASEDKFESVLSTRYCKNSPLVSILSETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDVMAHNHAFGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLQTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLD
50100150200250300350400400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (10-14)TI1 (14-17)TI2 (16-19)AH3 (27-48)AH7 (108-145)3H2 (60-63)TI4 (64-67)TI3 (50-53)EMPTYAH4 (55-59)TVIII1 (51-54)AH6 (86-94)TI5 (95-98)TIV1 (82-86)TI7 (98-101)TII1 (101-104)TII2 (103-106)TIV3 (232-235)TIV4 (235-238)AH12 (296-320)AH10 (212-226)AH13 (329-357)S2 (157-163)TI9 (145-148)AH11 (241-271)AH8 (164-188)S1 (149-154)TIV2 (153-156)AH9 (202-208)TIV5 (236-239)S3 (274-275)TII'1 (322-325)AH2 (20-25)AH5 (70-79)TI10 (196-199)TI'2 (208-211)S4 (359-360)AH14 (362-381)3H1 (3-5)O1 (262-300)Updating...
connected with : NaN
molecule tags Lyase
source organism Caenorhabditis elegans
publication title Structural genomics of Caenorhabditis elegans: adenylosuccinate lyase
rcsb
molecule keywords adenylosuccinate lyase
total genus 159
structure length 421
sequence length 467
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2005-01-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1yisA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1yisA02
3BHGA 5EYTA 1FUQA 1FUOA 1K7WA 3UNVA 1Y2MA 2NYFA 5F92A 2PTQA 4BAAA 1XWOA 1TJWA 3NZ4A 3R6VA 4NSLA 3RRPA 1B8FA 3TV2A 2PTRA 1FUPA 2O7FA 3OCFA 2O6YA 1GKJA 2QGAB 3RD8A 2O7BA 1HY0A 5D6BA 1VDKA 4C6GA 1JSWA 2YIIA 1Q5NA 4HGVA 1W27A 4ADLA 4APAA 4FFXA 1FURA 2O78A 1KQ7A 3NO9A 2FUSA 3GTDA 1YISA 4FLCA 1I0AA 2RJRA 2X75A 4ADMA 3QBPA 1GKMA 4MX2A 1K62A 2NYNA 3KDYA 2PTSA 1T6JA 1RE5A 2RJSA 1HY1A 2PFMA 4NLEA 5F91A 3GZHA 4C5UA 4APBA 1DCNA 1T6PA 1DOFA 4EEIA 1GK2A 3R6YA 2OHYA 2O7EA 4V2QA 1EB4A 1TJUA 4BABA 4C5RA 2HVGA 3R6QA 1J3UA 1U15A 5EYVA 3CZOA 1YFMA 1AUWA 2O7DA 3KDZA 4EFCA 1TJ7A 1U16A 1C3UA 5HW2A 4C5SA 1YFEA 4CQ5A 3E04A 1GK3A 4V2RA 3C8TA 2VD6A 3OCEA 1TJVA 1C3CA 2E9FA 2QVEA 2J91A
chains in the Genus database with same CATH superfamily
3BHGA 5EYTA 1FUQA 1FUOA 1K7WA 4WNLA 3UNVA 1Y2MA 2NYFA 5F92A 2PTQA 2FELA 4BAAA 1XWOA 1TJWA 3NZ4A 3R6VA 4NSLA 3RRPA 1B8FA 3TV2A 2PTRA 5M0IA 4A15A 1FUPA 2O7FA 3OCFA 2O6YA 1GKJA 1XL7A 2QGAB 1XL8A 3RD8A 2O7BA 1HY0A 5D6BA 1XLYA 1VDKA 4C6GA 1JSWA 3CRW1 2YIIA 1Q5NA 4HGVA 1W27A 4ADLA 4APAA 4FFXA 1FURA 2O78A 1KQ7A 3NO9A 2FUSA 3GTDA 1YISA 4FLCA 1I0AA 2RJRA 2X75A 4ADMA 3QBPA 1GKMA 4MX2A 1K62A 2NYNA 3KDYA 2PTSA 1T6JA 1RE5A 2RJSA 1HY1A 2FENA 2PFMA 4NLEA 5F91A 3GZHA 4C5UA 4APBA 1DCNA 1T6PA 5H8WA 1DOFA 4EEIA 1GK2A 5M0JA 3R6YA 2OHYA 2O7EA 1XMDA 4V2QA 3CRVA 1EB4A 1TJUA 4BABA 4C5RA 2HVGA 3R6QA 1J3UA 1U15A 5EYVA 3CZOA 1YFMA 1AUWA 2O7DA 3KDZA 4EFCA 1TJ7A 1U16A 1C3UA 5HW2A 2VSFA 4C5SA 1YFEA 4CQ5A 3E04A 1GK3A 4V2RA 1XMCA 3C8TA 2VD6A 3OCEA 1TJVA 1C3CA 2VL7A 2E9FA 2QVEA 2J91A
chains in the Genus database with same CATH topology
3BHGA 5EYTA 1FUQA 1FUOA 1K7WA 3UNVA 1Y2MA 2NYFA 5F92A 2PTQA 4BAAA 1XWOA 1TJWA 3NZ4A 3R6VA 4NSLA 3RRPA 1B8FA 3TV2A 2PTRA 1FUPA 2O7FA 3OCFA 2O6YA 1GKJA 2QGAB 3RD8A 2O7BA 1HY0A 5D6BA 1VDKA 4C6GA 1JSWA 2YIIA 1Q5NA 4HGVA 1W27A 4ADLA 4APAA 4FFXA 1FURA 2O78A 1KQ7A 3NO9A 2FUSA 3GTDA 1YISA 4FLCA 1I0AA 2RJRA 2X75A 4ADMA 3QBPA 1GKMA 4MX2A 1K62A 2NYNA 3KDYA 2PTSA 1T6JA 1RE5A 2RJSA 1HY1A 2PFMA 4NLEA 5F91A 3GZHA 4C5UA 4APBA 1DCNA 1T6PA 1DOFA 4EEIA 1GK2A 3R6YA 2OHYA 2O7EA 4V2QA 1EB4A 1TJUA 4BABA 4C5RA 2HVGA 3R6QA 1J3UA 1U15A 5EYVA 3CZOA 1YFMA 1AUWA 2O7DA 3KDZA 4EFCA 1TJ7A 1U16A 1C3UA 5HW2A 4C5SA 1YFEA 4CQ5A 3E04A 1GK3A 4V2RA 3C8TA 2VD6A 3OCEA 1TJVA 1C3CA 2E9FA 2QVEA 2J91A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BHG A;  5EYT A;  1FUQ A;  1FUO A;  1K7W A;  3UNV A;  1Y2M A;  2NYF A;  5F92 A;  2PTQ A;  4BAA A;  1XWO A;  1TJW A;  3NZ4 A;  3R6V A;  4NSL A;  3RRP A;  1B8F A;  3TV2 A;  2PTR A;  1FUP A;  2O7F A;  3OCF A;  2O6Y A;  1GKJ A;  2QGA B;  3RD8 A;  2O7B A;  1HY0 A;  5D6B A;  1VDK A;  4C6G A;  1JSW A;  2YII A;  1Q5N A;  4HGV A;  1W27 A;  4ADL A;  4APA A;  4FFX A;  1FUR A;  2O78 A;  1KQ7 A;  3NO9 A;  2FUS A;  3GTD A;  1YIS A;  4FLC A;  1I0A A;  2RJR A;  2X75 A;  4ADM A;  3QBP A;  1GKM A;  4MX2 A;  1K62 A;  2NYN A;  3KDY A;  2PTS A;  1T6J A;  1RE5 A;  2RJS A;  1HY1 A;  2PFM A;  4NLE A;  5F91 A;  3GZH A;  4C5U A;  4APB A;  1DCN A;  1T6P A;  1DOF A;  4EEI A;  1GK2 A;  3R6Y A;  2OHY A;  2O7E A;  4V2Q A;  1EB4 A;  1TJU A;  4BAB A;  4C5R A;  2HVG A;  3R6Q A;  1J3U A;  1U15 A;  5EYV A;  3CZO A;  1YFM A;  1AUW A;  2O7D A;  3KDZ A;  4EFC A;  1TJ7 A;  1U16 A;  1C3U A;  5HW2 A;  4C5S A;  1YFE A;  4CQ5 A;  3E04 A;  1GK3 A;  4V2R A;  3C8T A;  2VD6 A;  3OCE A;  1TJV A;  1C3C A;  2E9F A;  2QVE A;  2J91 A; 
#chains in the Genus database with same CATH topology
 3BHG A;  5EYT A;  1FUQ A;  1FUO A;  1K7W A;  4WNL A;  3UNV A;  1Y2M A;  2NYF A;  5F92 A;  2PTQ A;  2FEL A;  4BAA A;  1XWO A;  1TJW A;  3NZ4 A;  3R6V A;  4NSL A;  3RRP A;  1B8F A;  3TV2 A;  2PTR A;  5M0I A;  4A15 A;  1FUP A;  2O7F A;  3OCF A;  2O6Y A;  1GKJ A;  1XL7 A;  2QGA B;  1XL8 A;  3RD8 A;  2O7B A;  1HY0 A;  5D6B A;  1XLY A;  1VDK A;  4C6G A;  1JSW A;  3CRW 1;  2YII A;  1Q5N A;  4HGV A;  1W27 A;  4ADL A;  4APA A;  4FFX A;  1FUR A;  2O78 A;  1KQ7 A;  3NO9 A;  2FUS A;  3GTD A;  1YIS A;  4FLC A;  1I0A A;  2RJR A;  2X75 A;  4ADM A;  3QBP A;  1GKM A;  4MX2 A;  1K62 A;  2NYN A;  3KDY A;  2PTS A;  1T6J A;  1RE5 A;  2RJS A;  1HY1 A;  2FEN A;  2PFM A;  4NLE A;  5F91 A;  3GZH A;  4C5U A;  4APB A;  1DCN A;  1T6P A;  5H8W A;  1DOF A;  4EEI A;  1GK2 A;  5M0J A;  3R6Y A;  2OHY A;  2O7E A;  1XMD A;  4V2Q A;  3CRV A;  1EB4 A;  1TJU A;  4BAB A;  4C5R A;  2HVG A;  3R6Q A;  1J3U A;  1U15 A;  5EYV A;  3CZO A;  1YFM A;  1AUW A;  2O7D A;  3KDZ A;  4EFC A;  1TJ7 A;  1U16 A;  1C3U A;  5HW2 A;  2VSF A;  4C5S A;  1YFE A;  4CQ5 A;  3E04 A;  1GK3 A;  4V2R A;  1XMC A;  3C8T A;  2VD6 A;  3OCE A;  1TJV A;  1C3C A;  2VL7 A;  2E9F A;  2QVE A;  2J91 A; 
#chains in the Genus database with same CATH homology
 3BHG A;  5EYT A;  1FUQ A;  1FUO A;  1K7W A;  3UNV A;  1Y2M A;  2NYF A;  5F92 A;  2PTQ A;  4BAA A;  1XWO A;  1TJW A;  3NZ4 A;  3R6V A;  4NSL A;  3RRP A;  1B8F A;  3TV2 A;  2PTR A;  1FUP A;  2O7F A;  3OCF A;  2O6Y A;  1GKJ A;  2QGA B;  3RD8 A;  2O7B A;  1HY0 A;  5D6B A;  1VDK A;  4C6G A;  1JSW A;  2YII A;  1Q5N A;  4HGV A;  1W27 A;  4ADL A;  4APA A;  4FFX A;  1FUR A;  2O78 A;  1KQ7 A;  3NO9 A;  2FUS A;  3GTD A;  1YIS A;  4FLC A;  1I0A A;  2RJR A;  2X75 A;  4ADM A;  3QBP A;  1GKM A;  4MX2 A;  1K62 A;  2NYN A;  3KDY A;  2PTS A;  1T6J A;  1RE5 A;  2RJS A;  1HY1 A;  2PFM A;  4NLE A;  5F91 A;  3GZH A;  4C5U A;  4APB A;  1DCN A;  1T6P A;  1DOF A;  4EEI A;  1GK2 A;  3R6Y A;  2OHY A;  2O7E A;  4V2Q A;  1EB4 A;  1TJU A;  4BAB A;  4C5R A;  2HVG A;  3R6Q A;  1J3U A;  1U15 A;  5EYV A;  3CZO A;  1YFM A;  1AUW A;  2O7D A;  3KDZ A;  4EFC A;  1TJ7 A;  1U16 A;  1C3U A;  5HW2 A;  4C5S A;  1YFE A;  4CQ5 A;  3E04 A;  1GK3 A;  4V2R A;  3C8T A;  2VD6 A;  3OCE A;  1TJV A;  1C3C A;  2E9F A;  2QVE A;  2J91 A; 
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