2BZMA

Solution structure of the primary host recognition region of complement factor h
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
129
structure length
129
Chain Sequence
EAEFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune system
source organism Homo sapiens
publication title Disease-Associated Sequence Variations Congregate in a Polyanion Recognition Patch on Human Factor H Revealed in Three-Dimensional Structure.
pubmed doi rcsb
molecule keywords COMPLEMENT FACTOR H
total genus 11
structure length 129
sequence length 129
ec nomenclature
pdb deposition date 2005-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2bzmA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2bzmA02
1LY2A 3ERBA 2YRAA 2YBYA 3R62A 3GXEA 1OJYA 4C16A 4YNXA 3GOVA 4AYEA 2KMSA 1MD8A 2CKUA 4KKDA 2RLQA 1Z92B 2IZ3A 4ZH1D 2RL0A 2MCYA 4PZ5A 1QO6A 3T5OA 2W81A 1GKNA 2W80A 1O9AA 1UOTP 2ERJA 2XQWC 5JPMG 2EHFA 1FBRA 4ONTD 1H04P 1HCCA 3MQLA 3OEDC 4CSYA 1E88A 1GHQB 2IZ4A 2JRAA 2RLPA 4J38B 1C1ZA 5HYUB 1OK3A 4FXGG 2EC3A 4F4OC 5HZPB 1GPZA 2QY0A 1CKLA 2JGXA 2CG6A 2CG7A 4IGDA 2RKZA 1QUBA 1VVCA 1OK2A 3O8EB 4AYMA 4AYDA 4WJG2 3IU3I 3RJ3D 2WIIC 1HFHA 4DJZA 2MCZA 1H2PP 4MUCA 2KRIA 5HYPA 2G7IA 2XRDA 1OJWA 3IX0A 3EJHA 1TPMA 3NFPI 1H03P 1G4GA 1SS2A 1TPNA 2BZMA 4AYIA 1OJVA 1ZJKA 4JHSA 3L89M 1HFIA 1U5MA 3OP8A 2A55A 3CALA 1QGBA 1SRZA 2XRBA 2XWJI 3TVJA 3KZJA 3M7PA 1ELVA 3INBC 2XWBF 4LOSA 1G4FA 3ZD1A 2O39C 1H2QP 5FO8C 3ZRZA 1TPGA 1OK9A 4LOTA 1MD7A 1Q3XA 2B5ID 1OK1A 2V8EA 2LOJA 2RKYA 4A5WB 4K12A 3OXUD 4B2SA 1E8BA 3SW0X 1NWVA 1PPQA 5I0QB 1GKGA 4B2RA 1E5GA 2UWNA 5HYTB 1VVDA 2JGWA 3ZD2A 3KXVA
chains in the Genus database with same CATH superfamily
1LY2A 3ERBA 2YRAA 2YBYA 3VWOA 3R62A 3GXEA 4N7EA 2I2LA 1OJYA 4C16A 4YNXA 3GOVA 4AYEA 2KMSA 1MD8A 2CKUA 4KKDA 2RLQA 1Z92B 2IZ3A 4ZH1D 2RL0A 2MCYA 4PZ5A 1QO6A 3T5OA 2W81A 1GKNA 2W80A 1O9AA 1UOTP 2ERJA 2XQWC 5JPMG 2EHFA 1FBRA 4ONTD 1H04P 1HCCA 3MQLA 3OEDC 4CSYA 1E88A 1GHQB 2IZ4A 2JRAA 3K3TA 2RLPA 4J38B 1C1ZA 5HYUB 1OK3A 3F6KA 4FXGG 2EC3A 4F4OC 3NJAA 5HZPB 4APLA 1GPZA 2QY0A 1CKLA 3FGTA 2JGXA 2CG6A 2Y8SA 2CG7A 4IGDA 2RKZA 1QUBA 1RLHA 1VVCA 1OK2A 3O8EB 4AYMA 4AYDA 2Y8TA 4WJG2 3ZLEA 3IU3I 3RJ3D 2WIIC 1HFHA 4YIZA 4DJZA 2MCZA 1H2PP 4MUCA 2KRIA 5HYPA 2G7IA 2XRDA 1OJWA 5DN5A 3IX0A 3ZLDA 3EJHA 1TPMA 2Y8RA 1H03P 3NFPI 1G4GA 1SS2A 1TPNA 2BZMA 2X2ZA 4AYIA 1OJVA 1ZJKA 4JHSA 3L89M 3WSXA 1HFIA 1U5MA 3OP8A 2ZYCA 2A55A 3CALA 1QGBA 1SRZA 2XRBA 2XWJI 3TVJA 3KZJA 3M7PA 1ELVA 3INBC 3FGRA 2XWBF 4LOSA 1G4FA 3ZD1A 2O39C 1H2QP 5FO8C 3CI0J 5DN4A 3ZRZA 1TPGA 4PO7A 1OK9A 4LOTA 1MD7A 1Q3XA 4BWCA 2B5ID 1OK1A 2V8EA 4MSLA 2LOJA 2RKYA 4A5WB 4K12A 3OXUD 4B2SA 1E8BA 3SW0X 1NWVA 1PPQA 5I0QB 1GKGA 3WSYA 4B2RA 1E5GA 2UWNA 5HYTB 1VVDA 2JGWA 3ZD2A 3KXVA
chains in the Genus database with same CATH topology
1LY2A 3ERBA 2YRAA 2YBYA 3R62A 3GXEA 1OJYA 4C16A 4YNXA 3GOVA 4AYEA 2KMSA 1MD8A 2CKUA 4KKDA 2RLQA 1Z92B 2IZ3A 4ZH1D 2RL0A 2MCYA 4PZ5A 1QO6A 3T5OA 2W81A 1GKNA 2W80A 1O9AA 1UOTP 2ERJA 2XQWC 5JPMG 2EHFA 1FBRA 4ONTD 1H04P 1HCCA 3MQLA 3OEDC 4CSYA 1E88A 1GHQB 2IZ4A 2JRAA 2RLPA 4J38B 1C1ZA 5HYUB 1OK3A 4FXGG 2EC3A 4F4OC 5HZPB 1GPZA 2QY0A 1CKLA 2JGXA 2CG6A 2CG7A 4IGDA 2RKZA 1QUBA 1VVCA 1OK2A 3O8EB 4AYMA 4AYDA 4WJG2 3IU3I 3RJ3D 2WIIC 1HFHA 4DJZA 2MCZA 1H2PP 4MUCA 2KRIA 5HYPA 2G7IA 2XRDA 1OJWA 3IX0A 3EJHA 1TPMA 3NFPI 1H03P 1G4GA 1SS2A 1TPNA 2BZMA 4AYIA 1OJVA 1ZJKA 4JHSA 3L89M 1HFIA 1U5MA 3OP8A 2A55A 3CALA 1QGBA 1SRZA 2XRBA 2XWJI 3TVJA 3KZJA 3M7PA 1ELVA 3INBC 2XWBF 4LOSA 1G4FA 3ZD1A 2O39C 1H2QP 5FO8C 3ZRZA 1TPGA 1OK9A 4LOTA 1MD7A 1Q3XA 2B5ID 1OK1A 2V8EA 2LOJA 2RKYA 4A5WB 4K12A 3OXUD 4B2SA 1E8BA 3SW0X 1NWVA 1PPQA 5I0QB 1GKGA 4B2RA 1E5GA 2UWNA 5HYTB 1VVDA 2JGWA 3ZD2A 3KXVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LY2 A;  3ERB A;  2YRA A;  2YBY A;  3R62 A;  3GXE A;  1OJY A;  4C16 A;  4YNX A;  3GOV A;  4AYE A;  2KMS A;  1MD8 A;  2CKU A;  4KKD A;  2RLQ A;  1Z92 B;  2IZ3 A;  4ZH1 D;  2RL0 A;  2MCY A;  4PZ5 A;  1QO6 A;  3T5O A;  2W81 A;  1GKN A;  2W80 A;  1O9A A;  1UOT P;  2ERJ A;  2XQW C;  5JPM G;  2EHF A;  1FBR A;  4ONT D;  1H04 P;  1HCC A;  3MQL A;  3OED C;  4CSY A;  1E88 A;  1GHQ B;  2IZ4 A;  2JRA A;  2RLP A;  4J38 B;  1C1Z A;  5HYU B;  1OK3 A;  4FXG G;  2EC3 A;  4F4O C;  5HZP B;  1GPZ A;  2QY0 A;  1CKL A;  2JGX A;  2CG6 A;  2CG7 A;  4IGD A;  2RKZ A;  1QUB A;  1VVC A;  1OK2 A;  3O8E B;  4AYM A;  4AYD A;  4WJG 2;  3IU3 I;  3RJ3 D;  2WII C;  1HFH A;  4DJZ A;  2MCZ A;  1H2P P;  4MUC A;  2KRI A;  5HYP A;  2G7I A;  2XRD A;  1OJW A;  3IX0 A;  3EJH A;  1TPM A;  3NFP I;  1H03 P;  1G4G A;  1SS2 A;  1TPN A;  2BZM A;  4AYI A;  1OJV A;  1ZJK A;  4JHS A;  3L89 M;  1HFI A;  1U5M A;  3OP8 A;  2A55 A;  3CAL A;  1QGB A;  1SRZ A;  2XRB A;  2XWJ I;  3TVJ A;  3KZJ A;  3M7P A;  1ELV A;  3INB C;  2XWB F;  4LOS A;  1G4F A;  3ZD1 A;  2O39 C;  1H2Q P;  5FO8 C;  3ZRZ A;  1TPG A;  1OK9 A;  4LOT A;  1MD7 A;  1Q3X A;  2B5I D;  1OK1 A;  2V8E A;  2LOJ A;  2RKY A;  4A5W B;  4K12 A;  3OXU D;  4B2S A;  1E8B A;  3SW0 X;  1NWV A;  1PPQ A;  5I0Q B;  1GKG A;  4B2R A;  1E5G A;  2UWN A;  5HYT B;  1VVD A;  2JGW A;  3ZD2 A;  3KXV A; 
#chains in the Genus database with same CATH topology
 1LY2 A;  3ERB A;  2YRA A;  2YBY A;  3VWO A;  3R62 A;  3GXE A;  4N7E A;  2I2L A;  1OJY A;  4C16 A;  4YNX A;  3GOV A;  4AYE A;  2KMS A;  1MD8 A;  2CKU A;  4KKD A;  2RLQ A;  1Z92 B;  2IZ3 A;  4ZH1 D;  2RL0 A;  2MCY A;  4PZ5 A;  1QO6 A;  3T5O A;  2W81 A;  1GKN A;  2W80 A;  1O9A A;  1UOT P;  2ERJ A;  2XQW C;  5JPM G;  2EHF A;  1FBR A;  4ONT D;  1H04 P;  1HCC A;  3MQL A;  3OED C;  4CSY A;  1E88 A;  1GHQ B;  2IZ4 A;  2JRA A;  3K3T A;  2RLP A;  4J38 B;  1C1Z A;  5HYU B;  1OK3 A;  3F6K A;  4FXG G;  2EC3 A;  4F4O C;  3NJA A;  5HZP B;  4APL A;  1GPZ A;  2QY0 A;  1CKL A;  3FGT A;  2JGX A;  2CG6 A;  2Y8S A;  2CG7 A;  4IGD A;  2RKZ A;  1QUB A;  1RLH A;  1VVC A;  1OK2 A;  3O8E B;  4AYM A;  4AYD A;  2Y8T A;  4WJG 2;  3ZLE A;  3IU3 I;  3RJ3 D;  2WII C;  1HFH A;  4YIZ A;  4DJZ A;  2MCZ A;  1H2P P;  4MUC A;  2KRI A;  5HYP A;  2G7I A;  2XRD A;  1OJW A;  5DN5 A;  3IX0 A;  3ZLD A;  3EJH A;  1TPM A;  2Y8R A;  1H03 P;  3NFP I;  1G4G A;  1SS2 A;  1TPN A;  2BZM A;  2X2Z A;  4AYI A;  1OJV A;  1ZJK A;  4JHS A;  3L89 M;  3WSX A;  1HFI A;  1U5M A;  3OP8 A;  2ZYC A;  2A55 A;  3CAL A;  1QGB A;  1SRZ A;  2XRB A;  2XWJ I;  3TVJ A;  3KZJ A;  3M7P A;  1ELV A;  3INB C;  3FGR A;  2XWB F;  4LOS A;  1G4F A;  3ZD1 A;  2O39 C;  1H2Q P;  5FO8 C;  3CI0 J;  5DN4 A;  3ZRZ A;  1TPG A;  4PO7 A;  1OK9 A;  4LOT A;  1MD7 A;  1Q3X A;  4BWC A;  2B5I D;  1OK1 A;  2V8E A;  4MSL A;  2LOJ A;  2RKY A;  4A5W B;  4K12 A;  3OXU D;  4B2S A;  1E8B A;  3SW0 X;  1NWV A;  1PPQ A;  5I0Q B;  1GKG A;  3WSY A;  4B2R A;  1E5G A;  2UWN A;  5HYT B;  1VVD A;  2JGW A;  3ZD2 A;  3KXV A; 
#chains in the Genus database with same CATH homology
 1LY2 A;  3ERB A;  2YRA A;  2YBY A;  3R62 A;  3GXE A;  1OJY A;  4C16 A;  4YNX A;  3GOV A;  4AYE A;  2KMS A;  1MD8 A;  2CKU A;  4KKD A;  2RLQ A;  1Z92 B;  2IZ3 A;  4ZH1 D;  2RL0 A;  2MCY A;  4PZ5 A;  1QO6 A;  3T5O A;  2W81 A;  1GKN A;  2W80 A;  1O9A A;  1UOT P;  2ERJ A;  2XQW C;  5JPM G;  2EHF A;  1FBR A;  4ONT D;  1H04 P;  1HCC A;  3MQL A;  3OED C;  4CSY A;  1E88 A;  1GHQ B;  2IZ4 A;  2JRA A;  2RLP A;  4J38 B;  1C1Z A;  5HYU B;  1OK3 A;  4FXG G;  2EC3 A;  4F4O C;  5HZP B;  1GPZ A;  2QY0 A;  1CKL A;  2JGX A;  2CG6 A;  2CG7 A;  4IGD A;  2RKZ A;  1QUB A;  1VVC A;  1OK2 A;  3O8E B;  4AYM A;  4AYD A;  4WJG 2;  3IU3 I;  3RJ3 D;  2WII C;  1HFH A;  4DJZ A;  2MCZ A;  1H2P P;  4MUC A;  2KRI A;  5HYP A;  2G7I A;  2XRD A;  1OJW A;  3IX0 A;  3EJH A;  1TPM A;  3NFP I;  1H03 P;  1G4G A;  1SS2 A;  1TPN A;  2BZM A;  4AYI A;  1OJV A;  1ZJK A;  4JHS A;  3L89 M;  1HFI A;  1U5M A;  3OP8 A;  2A55 A;  3CAL A;  1QGB A;  1SRZ A;  2XRB A;  2XWJ I;  3TVJ A;  3KZJ A;  3M7P A;  1ELV A;  3INB C;  2XWB F;  4LOS A;  1G4F A;  3ZD1 A;  2O39 C;  1H2Q P;  5FO8 C;  3ZRZ A;  1TPG A;  1OK9 A;  4LOT A;  1MD7 A;  1Q3X A;  2B5I D;  1OK1 A;  2V8E A;  2LOJ A;  2RKY A;  4A5W B;  4K12 A;  3OXU D;  4B2S A;  1E8B A;  3SW0 X;  1NWV A;  1PPQ A;  5I0Q B;  1GKG A;  4B2R A;  1E5G A;  2UWN A;  5HYT B;  1VVD A;  2JGW A;  3ZD2 A;  3KXV A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.