2J91A

Crystal structure of human adenylosuccinate lyase in complex with amp
Total Genus 182
50100150200250300350400450050100150
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
470
structure length
457
Chain Sequence
GDHGSPDSYRSPLASRYASPEMCFVFSDRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEPFYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDHLLDPSSFTGRASQQVQRFLEEEVYPLLKPYES
50100150200250300350400450400300200100
050100150Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (5-8)TI2 (9-12)AH1 (16-21)AH7 (112-149)AH13 (333-359)AH2 (24-30)AH4 (59-67)AH3 (32-53)EMPTYTII2 (107-110)AH10 (216-230)O1 (55-57)TI'1 (212-215)TI3 (68-71)AH12 (299-324)AH5 (74-84)3H1 (100-105)TII1 (105-108)TI5 (200-203)TVIII1 (236-239)TIV3 (239-242)3H2 (431-439)TI4 (149-152)TIV1 (157-160)S1 (153-158)S2 (161-167)AH8 (168-192)AH9 (206-212)AH11 (245-275)TII'1 (326-329)TIV4 (359-362)AH15 (396-417)TIV5 (390-395)AH17 (440-444)TIV6 (448-451)3H3 (446-448)AH18 (452-469)AH6 (87-98)O2 (297-299)AH14 (366-390)S4 (363-364)AH16 (422-429)TI6 (330-333)Updating...
connected with : NaN
molecule tags Lyase
source organism Homo sapiens
publication title Crystal Structure of Human Adenylosuccinate Lyase
rcsb
molecule keywords ADENYLOSUCCINATE LYASE
total genus 182
structure length 457
sequence length 470
chains with identical sequence B, C, D
ec nomenclature ec 4.3.2.2: Adenylosuccinate lyase.
pdb deposition date 2006-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00206 Lyase_1 Lyase
A PF10397 ADSL_C Adenylosuccinate lyase C-terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2j91A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2j91A02
4FFXA 2PTSA 1GK3A 1GKMA 1DOFA 1TJ7A 4ADLA 4BABA 1TJWA 1YFEA 4C5UA 3RD8A 4V2QA 4V2RA 1XWOA 3UNVA 1T6JA 2O7DA 3TV2A 1FURA 1JSWA 1HY1A 3OCEA 1TJVA 2QGAB 3RRPA 3QBPA 2RJSA 1FUPA 1KQ7A 4NSLA 1HY0A 4FLCA 1YISA 1TJUA 1YFMA 4NLEA 1K62A 4EFCA 1Y2MA 3E04A 1U16A 2NYNA 1DCNA 5F92A 2E9FA 2HVGA 5EYVA 2QVEA 3GTDA 3KDZA 1C3UA 2NYFA 2O78A 2O7EA 1FUQA 3R6QA 1AUWA 5F91A 4APBA 1C3CA 1FUOA 4ADMA 1T6PA 4C6GA 1I0AA 2O6YA 4CQ5A 4C5SA 3BHGA 4EEIA 2OHYA 1U15A 2PTRA 2RJRA 1VDKA 2O7FA 5HW2A 5D6BA 1B8FA 3KDYA 4APAA 1J3UA 2J91A 2VD6A 3CZOA 2X75A 1EB4A 3NZ4A 2O7BA 1Q5NA 1K7WA 3GZHA 4HGVA 2PFMA 2FUSA 1GK2A 3R6YA 4C5RA 1GKJA 1RE5A 1W27A 3R6VA 4BAAA 5EYTA 2PTQA 2YIIA 3NO9A 4MX2A 3C8TA 3OCFA
chains in the Genus database with same CATH superfamily
4FFXA 2PTSA 1GK3A 1GKMA 1DOFA 1TJ7A 4ADLA 4BABA 5H8WA 1TJWA 1YFEA 4C5UA 3RD8A 3CRVA 4V2QA 4V2RA 1XWOA 3UNVA 5M0JA 1T6JA 2O7DA 3TV2A 1FURA 1JSWA 1HY1A 3OCEA 1TJVA 2QGAB 2VL7A 3RRPA 3QBPA 2RJSA 1FUPA 1KQ7A 4NSLA 1HY0A 4FLCA 1YISA 1TJUA 1YFMA 4NLEA 1K62A 4EFCA 1Y2MA 3E04A 1U16A 1XL7A 2NYNA 3CRW1 1DCNA 2VSFA 5F92A 2E9FA 2HVGA 5EYVA 2QVEA 3GTDA 4WNLA 3KDZA 1C3UA 2NYFA 2O78A 2O7EA 1FUQA 3R6QA 1AUWA 5F91A 2FELA 4APBA 1C3CA 1FUOA 4ADMA 1T6PA 4C6GA 1I0AA 2O6YA 4CQ5A 4C5SA 3BHGA 4EEIA 2OHYA 1U15A 2PTRA 2RJRA 1VDKA 2O7FA 5HW2A 5D6BA 1B8FA 3KDYA 4APAA 1J3UA 2J91A 1XMDA 2VD6A 3CZOA 2X75A 1EB4A 3NZ4A 2O7BA 1Q5NA 1K7WA 3GZHA 4HGVA 2PFMA 2FUSA 1GK2A 3R6YA 4C5RA 1GKJA 2FENA 1RE5A 1W27A 4A15A 1XLYA 5M0IA 3R6VA 4BAAA 1XL8A 5EYTA 2PTQA 2YIIA 1XMCA 3NO9A 4MX2A 3C8TA 3OCFA
chains in the Genus database with same CATH topology
4FFXA 2PTSA 1GK3A 1GKMA 1DOFA 1TJ7A 4ADLA 4BABA 1TJWA 1YFEA 4C5UA 3RD8A 4V2QA 4V2RA 1XWOA 3UNVA 1T6JA 2O7DA 3TV2A 1FURA 1JSWA 1HY1A 3OCEA 1TJVA 2QGAB 3RRPA 3QBPA 2RJSA 1FUPA 1KQ7A 4NSLA 1HY0A 4FLCA 1YISA 1TJUA 1YFMA 4NLEA 1K62A 4EFCA 1Y2MA 3E04A 1U16A 2NYNA 1DCNA 5F92A 2E9FA 2HVGA 5EYVA 2QVEA 3GTDA 3KDZA 1C3UA 2NYFA 2O78A 2O7EA 1FUQA 3R6QA 1AUWA 5F91A 4APBA 1C3CA 1FUOA 4ADMA 1T6PA 4C6GA 1I0AA 2O6YA 4CQ5A 4C5SA 3BHGA 4EEIA 2OHYA 1U15A 2PTRA 2RJRA 1VDKA 2O7FA 5HW2A 5D6BA 1B8FA 3KDYA 4APAA 1J3UA 2J91A 2VD6A 3CZOA 2X75A 1EB4A 3NZ4A 2O7BA 1Q5NA 1K7WA 3GZHA 4HGVA 2PFMA 2FUSA 1GK2A 3R6YA 4C5RA 1GKJA 1RE5A 1W27A 3R6VA 4BAAA 5EYTA 2PTQA 2YIIA 3NO9A 4MX2A 3C8TA 3OCFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FFX A;  2PTS A;  1GK3 A;  1GKM A;  1DOF A;  1TJ7 A;  4ADL A;  4BAB A;  1TJW A;  1YFE A;  4C5U A;  3RD8 A;  4V2Q A;  4V2R A;  1XWO A;  3UNV A;  1T6J A;  2O7D A;  3TV2 A;  1FUR A;  1JSW A;  1HY1 A;  3OCE A;  1TJV A;  2QGA B;  3RRP A;  3QBP A;  2RJS A;  1FUP A;  1KQ7 A;  4NSL A;  1HY0 A;  4FLC A;  1YIS A;  1TJU A;  1YFM A;  4NLE A;  1K62 A;  4EFC A;  1Y2M A;  3E04 A;  1U16 A;  2NYN A;  1DCN A;  5F92 A;  2E9F A;  2HVG A;  5EYV A;  2QVE A;  3GTD A;  3KDZ A;  1C3U A;  2NYF A;  2O78 A;  2O7E A;  1FUQ A;  3R6Q A;  1AUW A;  5F91 A;  4APB A;  1C3C A;  1FUO A;  4ADM A;  1T6P A;  4C6G A;  1I0A A;  2O6Y A;  4CQ5 A;  4C5S A;  3BHG A;  4EEI A;  2OHY A;  1U15 A;  2PTR A;  2RJR A;  1VDK A;  2O7F A;  5HW2 A;  5D6B A;  1B8F A;  3KDY A;  4APA A;  1J3U A;  2J91 A;  2VD6 A;  3CZO A;  2X75 A;  1EB4 A;  3NZ4 A;  2O7B A;  1Q5N A;  1K7W A;  3GZH A;  4HGV A;  2PFM A;  2FUS A;  1GK2 A;  3R6Y A;  4C5R A;  1GKJ A;  1RE5 A;  1W27 A;  3R6V A;  4BAA A;  5EYT A;  2PTQ A;  2YII A;  3NO9 A;  4MX2 A;  3C8T A;  3OCF A; 
#chains in the Genus database with same CATH topology
 4FFX A;  2PTS A;  1GK3 A;  1GKM A;  1DOF A;  1TJ7 A;  4ADL A;  4BAB A;  5H8W A;  1TJW A;  1YFE A;  4C5U A;  3RD8 A;  3CRV A;  4V2Q A;  4V2R A;  1XWO A;  3UNV A;  5M0J A;  1T6J A;  2O7D A;  3TV2 A;  1FUR A;  1JSW A;  1HY1 A;  3OCE A;  1TJV A;  2QGA B;  2VL7 A;  3RRP A;  3QBP A;  2RJS A;  1FUP A;  1KQ7 A;  4NSL A;  1HY0 A;  4FLC A;  1YIS A;  1TJU A;  1YFM A;  4NLE A;  1K62 A;  4EFC A;  1Y2M A;  3E04 A;  1U16 A;  1XL7 A;  2NYN A;  3CRW 1;  1DCN A;  2VSF A;  5F92 A;  2E9F A;  2HVG A;  5EYV A;  2QVE A;  3GTD A;  4WNL A;  3KDZ A;  1C3U A;  2NYF A;  2O78 A;  2O7E A;  1FUQ A;  3R6Q A;  1AUW A;  5F91 A;  2FEL A;  4APB A;  1C3C A;  1FUO A;  4ADM A;  1T6P A;  4C6G A;  1I0A A;  2O6Y A;  4CQ5 A;  4C5S A;  3BHG A;  4EEI A;  2OHY A;  1U15 A;  2PTR A;  2RJR A;  1VDK A;  2O7F A;  5HW2 A;  5D6B A;  1B8F A;  3KDY A;  4APA A;  1J3U A;  2J91 A;  1XMD A;  2VD6 A;  3CZO A;  2X75 A;  1EB4 A;  3NZ4 A;  2O7B A;  1Q5N A;  1K7W A;  3GZH A;  4HGV A;  2PFM A;  2FUS A;  1GK2 A;  3R6Y A;  4C5R A;  1GKJ A;  2FEN A;  1RE5 A;  1W27 A;  4A15 A;  1XLY A;  5M0I A;  3R6V A;  4BAA A;  1XL8 A;  5EYT A;  2PTQ A;  2YII A;  1XMC A;  3NO9 A;  4MX2 A;  3C8T A;  3OCF A; 
#chains in the Genus database with same CATH homology
 4FFX A;  2PTS A;  1GK3 A;  1GKM A;  1DOF A;  1TJ7 A;  4ADL A;  4BAB A;  1TJW A;  1YFE A;  4C5U A;  3RD8 A;  4V2Q A;  4V2R A;  1XWO A;  3UNV A;  1T6J A;  2O7D A;  3TV2 A;  1FUR A;  1JSW A;  1HY1 A;  3OCE A;  1TJV A;  2QGA B;  3RRP A;  3QBP A;  2RJS A;  1FUP A;  1KQ7 A;  4NSL A;  1HY0 A;  4FLC A;  1YIS A;  1TJU A;  1YFM A;  4NLE A;  1K62 A;  4EFC A;  1Y2M A;  3E04 A;  1U16 A;  2NYN A;  1DCN A;  5F92 A;  2E9F A;  2HVG A;  5EYV A;  2QVE A;  3GTD A;  3KDZ A;  1C3U A;  2NYF A;  2O78 A;  2O7E A;  1FUQ A;  3R6Q A;  1AUW A;  5F91 A;  4APB A;  1C3C A;  1FUO A;  4ADM A;  1T6P A;  4C6G A;  1I0A A;  2O6Y A;  4CQ5 A;  4C5S A;  3BHG A;  4EEI A;  2OHY A;  1U15 A;  2PTR A;  2RJR A;  1VDK A;  2O7F A;  5HW2 A;  5D6B A;  1B8F A;  3KDY A;  4APA A;  1J3U A;  2J91 A;  2VD6 A;  3CZO A;  2X75 A;  1EB4 A;  3NZ4 A;  2O7B A;  1Q5N A;  1K7W A;  3GZH A;  4HGV A;  2PFM A;  2FUS A;  1GK2 A;  3R6Y A;  4C5R A;  1GKJ A;  1RE5 A;  1W27 A;  3R6V A;  4BAA A;  5EYT A;  2PTQ A;  2YII A;  3NO9 A;  4MX2 A;  3C8T A;  3OCF A; 
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