2JGWA

Structure of ccp module 7 of complement factor h - the amd at risk varient (402h)
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
61
structure length
61
Chain Sequence
LRKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Immune response
source organism Homo sapiens
publication title Structure shows that a glycosaminoglycan and protein recognition site in factor H is perturbed by age-related macular degeneration-linked single nucleotide polymorphism.
pubmed doi rcsb
molecule keywords COMPLEMENT FACTOR H
total genus 11
structure length 61
sequence length 61
ec nomenclature
pdb deposition date 2007-02-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2jgwA00
5HYPA 4FXGG 2YRAA 4AYMA 3EJHA 1H04P 2BZMA 1VVDA 1SRZA 2ERJA 2MCZA 1H2PP 1O9AA 1OK3A 1QGBA 1OK2A 3IX0A 1GPZA 3ZRZA 1TPMA 2XWBF 5HYTB 2XQWC 1Q3XA 3NFPI 2RL0A 2G7IA 1PPQA 1HCCA 4CSYA 3M7PA 4J38B 5I0QB 4B2RA 2W80A 4KKDA 4A5WB 4AYDA 4AYIA 4DJZA 1GKGA 3IU3I 1GKNA 1G4FA 1OK9A 3ERBA 3KZJA 2KRIA 2RKZA 2RLPA 2IZ4A 2KMSA 1H03P 1CKLA 3OXUD 1C1ZA 3TVJA 1UOTP 1QUBA 2CG7A 2XRDA 3GOVA 1E88A 2QY0A 2RLQA 2YBYA 3MQLA 2W81A 3CALA 1G4GA 4IGDA 3INBC 1HFIA 2LOJA 2EC3A 1SS2A 1OJWA 4MUCA 2B5ID 2JGXA 2IZ3A 1H2QP 2A55A 3OEDC 2XWJI 4YNXA 3R62A 4PZ5A 2CKUA 1QO6A 2XRBA 3O8EB 2JGWA 4JHSA 4ZH1D 1HFHA 5JPMG 4F4OC 1E5GA 2V8EA 3ZD2A 1ZJKA 2UWNA 2CG6A 1ELVA 4C16A 3RJ3D 3L89M 3OP8A 3T5OA 1OK1A 2RKYA 4LOSA 5HZPB 1OJYA 3KXVA 1OJVA 2MCYA 4B2SA 1TPGA 1FBRA 1MD8A 3SW0X 1NWVA 1U5MA 1LY2A 4K12A 1VVCA 4LOTA 5HYUB 1Z92B 1E8BA 1MD7A 1GHQB 2O39C 4ONTD 2JRAA 1TPNA 3GXEA 4WJG2 4AYEA 5FO8C 2WIIC 3ZD1A 2EHFA
chains in the Genus database with same CATH superfamily
5HYPA 4FXGG 2YRAA 4AYMA 3EJHA 1H04P 2BZMA 2Y8SA 1VVDA 1SRZA 2ERJA 2MCZA 1H2PP 1O9AA 1OK3A 1QGBA 3FGTA 3VWOA 1OK2A 4APLA 3IX0A 1GPZA 3ZRZA 1TPMA 2XWBF 5HYTB 2XQWC 1Q3XA 3NFPI 2RL0A 2G7IA 1PPQA 1HCCA 4CSYA 3M7PA 4J38B 5I0QB 4B2RA 2W80A 4KKDA 3WSYA 4A5WB 4AYDA 4AYIA 4DJZA 1GKGA 3IU3I 1GKNA 1G4FA 1OK9A 3ERBA 3KZJA 2KRIA 2RKZA 2RLPA 2IZ4A 4PO7A 2KMSA 1H03P 1CKLA 3OXUD 1C1ZA 3TVJA 1UOTP 1QUBA 2CG7A 2XRDA 3GOVA 1E88A 2QY0A 4N7EA 2RLQA 2YBYA 3MQLA 2W81A 2X2ZA 3CALA 1G4GA 3FGRA 4IGDA 3INBC 1HFIA 2LOJA 2EC3A 1SS2A 1OJWA 4MUCA 2B5ID 2JGXA 2IZ3A 1H2QP 2A55A 3OEDC 3K3TA 2XWJI 4YNXA 3R62A 4PZ5A 2CKUA 3F6KA 4YIZA 1QO6A 2XRBA 3O8EB 2JGWA 4JHSA 4ZH1D 1HFHA 2Y8RA 2I2LA 4BWCA 5JPMG 4F4OC 1E5GA 2V8EA 2ZYCA 3ZD2A 1ZJKA 2UWNA 3ZLEA 2CG6A 1ELVA 4C16A 3RJ3D 3L89M 3OP8A 3T5OA 1OK1A 2RKYA 3CI0J 4LOSA 3NJAA 5HZPB 1OJYA 2Y8TA 3KXVA 1OJVA 2MCYA 4B2SA 1TPGA 1FBRA 1MD8A 3ZLDA 3SW0X 1NWVA 1U5MA 1LY2A 4K12A 1VVCA 4LOTA 5HYUB 1Z92B 1RLHA 1E8BA 1MD7A 1GHQB 2O39C 4ONTD 2JRAA 1TPNA 3GXEA 4WJG2 4MSLA 3WSXA 5DN4A 4AYEA 5DN5A 5FO8C 2WIIC 3ZD1A 2EHFA
chains in the Genus database with same CATH topology
5HYPA 4FXGG 2YRAA 4AYMA 3EJHA 1H04P 2BZMA 1VVDA 1SRZA 2ERJA 2MCZA 1H2PP 1O9AA 1OK3A 1QGBA 1OK2A 3IX0A 1GPZA 3ZRZA 1TPMA 2XWBF 5HYTB 2XQWC 1Q3XA 3NFPI 2RL0A 2G7IA 1PPQA 1HCCA 4CSYA 3M7PA 4J38B 5I0QB 4B2RA 2W80A 4KKDA 4A5WB 4AYDA 4AYIA 4DJZA 1GKGA 3IU3I 1GKNA 1G4FA 1OK9A 3ERBA 3KZJA 2KRIA 2RKZA 2RLPA 2IZ4A 2KMSA 1H03P 1CKLA 3OXUD 1C1ZA 3TVJA 1UOTP 1QUBA 2CG7A 2XRDA 3GOVA 1E88A 2QY0A 2RLQA 2YBYA 3MQLA 2W81A 3CALA 1G4GA 4IGDA 3INBC 1HFIA 2LOJA 2EC3A 1SS2A 1OJWA 4MUCA 2B5ID 2JGXA 2IZ3A 1H2QP 2A55A 3OEDC 2XWJI 4YNXA 3R62A 4PZ5A 2CKUA 1QO6A 2XRBA 3O8EB 2JGWA 4JHSA 4ZH1D 1HFHA 5JPMG 4F4OC 1E5GA 2V8EA 3ZD2A 1ZJKA 2UWNA 2CG6A 1ELVA 4C16A 3RJ3D 3L89M 3OP8A 3T5OA 1OK1A 2RKYA 4LOSA 5HZPB 1OJYA 3KXVA 1OJVA 2MCYA 4B2SA 1TPGA 1FBRA 1MD8A 3SW0X 1NWVA 1U5MA 1LY2A 4K12A 1VVCA 4LOTA 5HYUB 1Z92B 1E8BA 1MD7A 1GHQB 2O39C 4ONTD 2JRAA 1TPNA 3GXEA 4WJG2 4AYEA 5FO8C 2WIIC 3ZD1A 2EHFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HYP A;  4FXG G;  2YRA A;  4AYM A;  3EJH A;  1H04 P;  2BZM A;  1VVD A;  1SRZ A;  2ERJ A;  2MCZ A;  1H2P P;  1O9A A;  1OK3 A;  1QGB A;  1OK2 A;  3IX0 A;  1GPZ A;  3ZRZ A;  1TPM A;  2XWB F;  5HYT B;  2XQW C;  1Q3X A;  3NFP I;  2RL0 A;  2G7I A;  1PPQ A;  1HCC A;  4CSY A;  3M7P A;  4J38 B;  5I0Q B;  4B2R A;  2W80 A;  4KKD A;  4A5W B;  4AYD A;  4AYI A;  4DJZ A;  1GKG A;  3IU3 I;  1GKN A;  1G4F A;  1OK9 A;  3ERB A;  3KZJ A;  2KRI A;  2RKZ A;  2RLP A;  2IZ4 A;  2KMS A;  1H03 P;  1CKL A;  3OXU D;  1C1Z A;  3TVJ A;  1UOT P;  1QUB A;  2CG7 A;  2XRD A;  3GOV A;  1E88 A;  2QY0 A;  2RLQ A;  2YBY A;  3MQL A;  2W81 A;  3CAL A;  1G4G A;  4IGD A;  3INB C;  1HFI A;  2LOJ A;  2EC3 A;  1SS2 A;  1OJW A;  4MUC A;  2B5I D;  2JGX A;  2IZ3 A;  1H2Q P;  2A55 A;  3OED C;  2XWJ I;  4YNX A;  3R62 A;  4PZ5 A;  2CKU A;  1QO6 A;  2XRB A;  3O8E B;  2JGW A;  4JHS A;  4ZH1 D;  1HFH A;  5JPM G;  4F4O C;  1E5G A;  2V8E A;  3ZD2 A;  1ZJK A;  2UWN A;  2CG6 A;  1ELV A;  4C16 A;  3RJ3 D;  3L89 M;  3OP8 A;  3T5O A;  1OK1 A;  2RKY A;  4LOS A;  5HZP B;  1OJY A;  3KXV A;  1OJV A;  2MCY A;  4B2S A;  1TPG A;  1FBR A;  1MD8 A;  3SW0 X;  1NWV A;  1U5M A;  1LY2 A;  4K12 A;  1VVC A;  4LOT A;  5HYU B;  1Z92 B;  1E8B A;  1MD7 A;  1GHQ B;  2O39 C;  4ONT D;  2JRA A;  1TPN A;  3GXE A;  4WJG 2;  4AYE A;  5FO8 C;  2WII C;  3ZD1 A;  2EHF A; 
#chains in the Genus database with same CATH topology
 5HYP A;  4FXG G;  2YRA A;  4AYM A;  3EJH A;  1H04 P;  2BZM A;  2Y8S A;  1VVD A;  1SRZ A;  2ERJ A;  2MCZ A;  1H2P P;  1O9A A;  1OK3 A;  1QGB A;  3FGT A;  3VWO A;  1OK2 A;  4APL A;  3IX0 A;  1GPZ A;  3ZRZ A;  1TPM A;  2XWB F;  5HYT B;  2XQW C;  1Q3X A;  3NFP I;  2RL0 A;  2G7I A;  1PPQ A;  1HCC A;  4CSY A;  3M7P A;  4J38 B;  5I0Q B;  4B2R A;  2W80 A;  4KKD A;  3WSY A;  4A5W B;  4AYD A;  4AYI A;  4DJZ A;  1GKG A;  3IU3 I;  1GKN A;  1G4F A;  1OK9 A;  3ERB A;  3KZJ A;  2KRI A;  2RKZ A;  2RLP A;  2IZ4 A;  4PO7 A;  2KMS A;  1H03 P;  1CKL A;  3OXU D;  1C1Z A;  3TVJ A;  1UOT P;  1QUB A;  2CG7 A;  2XRD A;  3GOV A;  1E88 A;  2QY0 A;  4N7E A;  2RLQ A;  2YBY A;  3MQL A;  2W81 A;  2X2Z A;  3CAL A;  1G4G A;  3FGR A;  4IGD A;  3INB C;  1HFI A;  2LOJ A;  2EC3 A;  1SS2 A;  1OJW A;  4MUC A;  2B5I D;  2JGX A;  2IZ3 A;  1H2Q P;  2A55 A;  3OED C;  3K3T A;  2XWJ I;  4YNX A;  3R62 A;  4PZ5 A;  2CKU A;  3F6K A;  4YIZ A;  1QO6 A;  2XRB A;  3O8E B;  2JGW A;  4JHS A;  4ZH1 D;  1HFH A;  2Y8R A;  2I2L A;  4BWC A;  5JPM G;  4F4O C;  1E5G A;  2V8E A;  2ZYC A;  3ZD2 A;  1ZJK A;  2UWN A;  3ZLE A;  2CG6 A;  1ELV A;  4C16 A;  3RJ3 D;  3L89 M;  3OP8 A;  3T5O A;  1OK1 A;  2RKY A;  3CI0 J;  4LOS A;  3NJA A;  5HZP B;  1OJY A;  2Y8T A;  3KXV A;  1OJV A;  2MCY A;  4B2S A;  1TPG A;  1FBR A;  1MD8 A;  3ZLD A;  3SW0 X;  1NWV A;  1U5M A;  1LY2 A;  4K12 A;  1VVC A;  4LOT A;  5HYU B;  1Z92 B;  1RLH A;  1E8B A;  1MD7 A;  1GHQ B;  2O39 C;  4ONT D;  2JRA A;  1TPN A;  3GXE A;  4WJG 2;  4MSL A;  3WSX A;  5DN4 A;  4AYE A;  5DN5 A;  5FO8 C;  2WII C;  3ZD1 A;  2EHF A; 
#chains in the Genus database with same CATH homology
 5HYP A;  4FXG G;  2YRA A;  4AYM A;  3EJH A;  1H04 P;  2BZM A;  1VVD A;  1SRZ A;  2ERJ A;  2MCZ A;  1H2P P;  1O9A A;  1OK3 A;  1QGB A;  1OK2 A;  3IX0 A;  1GPZ A;  3ZRZ A;  1TPM A;  2XWB F;  5HYT B;  2XQW C;  1Q3X A;  3NFP I;  2RL0 A;  2G7I A;  1PPQ A;  1HCC A;  4CSY A;  3M7P A;  4J38 B;  5I0Q B;  4B2R A;  2W80 A;  4KKD A;  4A5W B;  4AYD A;  4AYI A;  4DJZ A;  1GKG A;  3IU3 I;  1GKN A;  1G4F A;  1OK9 A;  3ERB A;  3KZJ A;  2KRI A;  2RKZ A;  2RLP A;  2IZ4 A;  2KMS A;  1H03 P;  1CKL A;  3OXU D;  1C1Z A;  3TVJ A;  1UOT P;  1QUB A;  2CG7 A;  2XRD A;  3GOV A;  1E88 A;  2QY0 A;  2RLQ A;  2YBY A;  3MQL A;  2W81 A;  3CAL A;  1G4G A;  4IGD A;  3INB C;  1HFI A;  2LOJ A;  2EC3 A;  1SS2 A;  1OJW A;  4MUC A;  2B5I D;  2JGX A;  2IZ3 A;  1H2Q P;  2A55 A;  3OED C;  2XWJ I;  4YNX A;  3R62 A;  4PZ5 A;  2CKU A;  1QO6 A;  2XRB A;  3O8E B;  2JGW A;  4JHS A;  4ZH1 D;  1HFH A;  5JPM G;  4F4O C;  1E5G A;  2V8E A;  3ZD2 A;  1ZJK A;  2UWN A;  2CG6 A;  1ELV A;  4C16 A;  3RJ3 D;  3L89 M;  3OP8 A;  3T5O A;  1OK1 A;  2RKY A;  4LOS A;  5HZP B;  1OJY A;  3KXV A;  1OJV A;  2MCY A;  4B2S A;  1TPG A;  1FBR A;  1MD8 A;  3SW0 X;  1NWV A;  1U5M A;  1LY2 A;  4K12 A;  1VVC A;  4LOT A;  5HYU B;  1Z92 B;  1E8B A;  1MD7 A;  1GHQ B;  2O39 C;  4ONT D;  2JRA A;  1TPN A;  3GXE A;  4WJG 2;  4AYE A;  5FO8 C;  2WII C;  3ZD1 A;  2EHF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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