2JRAA

A novel domain-swapped solution nmr structure of protein rpa2121 from rhodopseudomonas palustris. northeast structural genomics target rpt6
Total Genus 5
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
67
structure length
67
Chain Sequence
MMTASDRLGADPTQAASSPGGARAVSIVGNQIDSRELFTVDREIVIAHGDDRYRLRLTSQNKLILTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Rhodopseudomonas palustris
publication title A novel domain-swapped solution NMR structure of protein RPA2121 from Rhodopseudomonas palustris.
rcsb
molecule keywords Protein RPA2121
total genus 5
structure length 67
sequence length 67
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10636 hemP Hemin uptake protein hemP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2jraA01
3NFPI 3GXEA 1GKGA 1E5GA 2YRAA 2JRAA 4K12A 1OK3A 1LY2A 2RL0A 4FXGG 4AYMA 2V8EA 1OK1A 1SRZA 3GOVA 2B5ID 2JGXA 4ONTD 4AYDA 2EHFA 2RLPA 3M7PA 1H04P 3OEDC 5HYUB 5HYTB 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 1TPMA 1H2PP 4PZ5A 4LOSA 3R62A 1C1ZA 2RLQA 2WIIC 1HFIA 1OK9A 2W81A 3IU3I 3KZJA 4JHSA 4KKDA 1HFHA 2IZ4A 3OXUD 4ZH1D 2XWBF 4J38B 2EC3A 2G7IA 2CG7A 5FO8C 3IX0A 3KXVA 3ZRZA 4YNXA 2XQWC 1GPZA 1OJYA 1ZJKA 2RKYA 1GKNA 2CKUA 2UWNA 4B2SA 1CKLA 2CG6A 4LOTA 3T5OA 2W80A 3O8EB 3INBC 1UOTP 5HZPB 1NWVA 4AYIA 4A5WB 1GHQB 1Z92B 1U5MA 2IZ3A 2JGWA 2KMSA 1FBRA 3MQLA 2KRIA 3ZD1A 2A55A 2YBYA 1O9AA 4IGDA 1QGBA 3ERBA 5HYPA 5JPMG 1QO6A 2RKZA 1ELVA 3RJ3D 1G4FA 1OK2A 2MCYA 2MCZA 3ZD2A 2XRDA 4AYEA 2LOJA 1E8BA 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 1MD8A 2QY0A 1OJVA 4WJG2 1H03P 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 4MUCA 3L89M 3OP8A 1VVDA 4DJZA 2O39C 4F4OC 1MD7A 1QUBA 3SW0X 1VVCA 2XWJI 2BZMA 3CALA 1Q3XA
chains in the Genus database with same CATH superfamily
3NFPI 3GXEA 1GKGA 1E5GA 2YRAA 2JRAA 4K12A 1OK3A 1LY2A 2RL0A 2ZYCA 4FXGG 4AYMA 2V8EA 3K3TA 1OK1A 1SRZA 3GOVA 2B5ID 2JGXA 3ZLEA 4ONTD 4AYDA 2EHFA 2RLPA 3M7PA 1H04P 3OEDC 5HYUB 5HYTB 2X2ZA 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 1TPMA 1H2PP 4PZ5A 4LOSA 3R62A 1C1ZA 2RLQA 1RLHA 2WIIC 1HFIA 1OK9A 2W81A 3IU3I 3NJAA 4PO7A 3CI0J 3FGRA 5DN5A 3F6KA 4N7EA 3KZJA 4YIZA 4JHSA 4KKDA 1HFHA 2IZ4A 3OXUD 4ZH1D 2XWBF 4J38B 2EC3A 2G7IA 2CG7A 2I2LA 5FO8C 3IX0A 3KXVA 3ZRZA 4YNXA 2XQWC 1GPZA 2Y8TA 1OJYA 4APLA 2Y8RA 1ZJKA 2RKYA 1GKNA 2CKUA 2UWNA 4B2SA 5DN4A 1CKLA 4MSLA 2CG6A 4LOTA 3T5OA 2W80A 3O8EB 3INBC 1UOTP 4BWCA 5HZPB 1NWVA 4AYIA 4A5WB 1GHQB 1Z92B 1U5MA 2IZ3A 2JGWA 2KMSA 1FBRA 3MQLA 2KRIA 3ZD1A 2A55A 2YBYA 1O9AA 4IGDA 1QGBA 3ERBA 5HYPA 3ZLDA 5JPMG 1QO6A 2RKZA 1ELVA 3RJ3D 1G4FA 3WSXA 1OK2A 2MCYA 2MCZA 3VWOA 2XRDA 3ZD2A 4AYEA 2LOJA 3FGTA 1E8BA 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 1MD8A 2QY0A 1OJVA 4WJG2 1H03P 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 4MUCA 3WSYA 3L89M 3OP8A 1VVDA 4DJZA 2O39C 4F4OC 1MD7A 1QUBA 3SW0X 2Y8SA 1VVCA 2XWJI 2BZMA 3CALA 1Q3XA
chains in the Genus database with same CATH topology
3NFPI 3GXEA 1GKGA 1E5GA 2YRAA 2JRAA 4K12A 1OK3A 1LY2A 2RL0A 4FXGG 4AYMA 2V8EA 1OK1A 1SRZA 3GOVA 2B5ID 2JGXA 4ONTD 4AYDA 2EHFA 2RLPA 3M7PA 1H04P 3OEDC 5HYUB 5HYTB 4B2RA 1PPQA 1SS2A 2ERJA 1G4GA 4C16A 1TPMA 1H2PP 4PZ5A 4LOSA 3R62A 1C1ZA 2RLQA 2WIIC 1HFIA 1OK9A 2W81A 3IU3I 3KZJA 4JHSA 4KKDA 1HFHA 2IZ4A 3OXUD 4ZH1D 2XWBF 4J38B 2EC3A 2G7IA 2CG7A 5FO8C 3IX0A 3KXVA 3ZRZA 4YNXA 2XQWC 1GPZA 1OJYA 1ZJKA 2RKYA 1GKNA 2CKUA 2UWNA 4B2SA 1CKLA 2CG6A 4LOTA 3T5OA 2W80A 3O8EB 3INBC 1UOTP 5HZPB 1NWVA 4AYIA 4A5WB 1GHQB 1Z92B 1U5MA 2IZ3A 2JGWA 2KMSA 1FBRA 3MQLA 2KRIA 3ZD1A 2A55A 2YBYA 1O9AA 4IGDA 1QGBA 3ERBA 5HYPA 5JPMG 1QO6A 2RKZA 1ELVA 3RJ3D 1G4FA 1OK2A 2MCYA 2MCZA 3ZD2A 2XRDA 4AYEA 2LOJA 1E8BA 1OJWA 4CSYA 1H2QP 1E88A 1HCCA 1MD8A 2QY0A 1OJVA 4WJG2 1H03P 5I0QB 1TPGA 3EJHA 3TVJA 1TPNA 2XRBA 4MUCA 3L89M 3OP8A 1VVDA 4DJZA 2O39C 4F4OC 1MD7A 1QUBA 3SW0X 1VVCA 2XWJI 2BZMA 3CALA 1Q3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NFP I;  3GXE A;  1GKG A;  1E5G A;  2YRA A;  2JRA A;  4K12 A;  1OK3 A;  1LY2 A;  2RL0 A;  4FXG G;  4AYM A;  2V8E A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  2JGX A;  4ONT D;  4AYD A;  2EHF A;  2RLP A;  3M7P A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  1TPM A;  1H2P P;  4PZ5 A;  4LOS A;  3R62 A;  1C1Z A;  2RLQ A;  2WII C;  1HFI A;  1OK9 A;  2W81 A;  3IU3 I;  3KZJ A;  4JHS A;  4KKD A;  1HFH A;  2IZ4 A;  3OXU D;  4ZH1 D;  2XWB F;  4J38 B;  2EC3 A;  2G7I A;  2CG7 A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4YNX A;  2XQW C;  1GPZ A;  1OJY A;  1ZJK A;  2RKY A;  1GKN A;  2CKU A;  2UWN A;  4B2S A;  1CKL A;  2CG6 A;  4LOT A;  3T5O A;  2W80 A;  3O8E B;  3INB C;  1UOT P;  5HZP B;  1NWV A;  4AYI A;  4A5W B;  1GHQ B;  1Z92 B;  1U5M A;  2IZ3 A;  2JGW A;  2KMS A;  1FBR A;  3MQL A;  2KRI A;  3ZD1 A;  2A55 A;  2YBY A;  1O9A A;  4IGD A;  1QGB A;  3ERB A;  5HYP A;  5JPM G;  1QO6 A;  2RKZ A;  1ELV A;  3RJ3 D;  1G4F A;  1OK2 A;  2MCY A;  2MCZ A;  3ZD2 A;  2XRD A;  4AYE A;  2LOJ A;  1E8B A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  1MD8 A;  2QY0 A;  1OJV A;  4WJG 2;  1H03 P;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  4MUC A;  3L89 M;  3OP8 A;  1VVD A;  4DJZ A;  2O39 C;  4F4O C;  1MD7 A;  1QUB A;  3SW0 X;  1VVC A;  2XWJ I;  2BZM A;  3CAL A;  1Q3X A; 
#chains in the Genus database with same CATH topology
 3NFP I;  3GXE A;  1GKG A;  1E5G A;  2YRA A;  2JRA A;  4K12 A;  1OK3 A;  1LY2 A;  2RL0 A;  2ZYC A;  4FXG G;  4AYM A;  2V8E A;  3K3T A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  2JGX A;  3ZLE A;  4ONT D;  4AYD A;  2EHF A;  2RLP A;  3M7P A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  2X2Z A;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  1TPM A;  1H2P P;  4PZ5 A;  4LOS A;  3R62 A;  1C1Z A;  2RLQ A;  1RLH A;  2WII C;  1HFI A;  1OK9 A;  2W81 A;  3IU3 I;  3NJA A;  4PO7 A;  3CI0 J;  3FGR A;  5DN5 A;  3F6K A;  4N7E A;  3KZJ A;  4YIZ A;  4JHS A;  4KKD A;  1HFH A;  2IZ4 A;  3OXU D;  4ZH1 D;  2XWB F;  4J38 B;  2EC3 A;  2G7I A;  2CG7 A;  2I2L A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4YNX A;  2XQW C;  1GPZ A;  2Y8T A;  1OJY A;  4APL A;  2Y8R A;  1ZJK A;  2RKY A;  1GKN A;  2CKU A;  2UWN A;  4B2S A;  5DN4 A;  1CKL A;  4MSL A;  2CG6 A;  4LOT A;  3T5O A;  2W80 A;  3O8E B;  3INB C;  1UOT P;  4BWC A;  5HZP B;  1NWV A;  4AYI A;  4A5W B;  1GHQ B;  1Z92 B;  1U5M A;  2IZ3 A;  2JGW A;  2KMS A;  1FBR A;  3MQL A;  2KRI A;  3ZD1 A;  2A55 A;  2YBY A;  1O9A A;  4IGD A;  1QGB A;  3ERB A;  5HYP A;  3ZLD A;  5JPM G;  1QO6 A;  2RKZ A;  1ELV A;  3RJ3 D;  1G4F A;  3WSX A;  1OK2 A;  2MCY A;  2MCZ A;  3VWO A;  2XRD A;  3ZD2 A;  4AYE A;  2LOJ A;  3FGT A;  1E8B A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  1MD8 A;  2QY0 A;  1OJV A;  4WJG 2;  1H03 P;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  4MUC A;  3WSY A;  3L89 M;  3OP8 A;  1VVD A;  4DJZ A;  2O39 C;  4F4O C;  1MD7 A;  1QUB A;  3SW0 X;  2Y8S A;  1VVC A;  2XWJ I;  2BZM A;  3CAL A;  1Q3X A; 
#chains in the Genus database with same CATH homology
 3NFP I;  3GXE A;  1GKG A;  1E5G A;  2YRA A;  2JRA A;  4K12 A;  1OK3 A;  1LY2 A;  2RL0 A;  4FXG G;  4AYM A;  2V8E A;  1OK1 A;  1SRZ A;  3GOV A;  2B5I D;  2JGX A;  4ONT D;  4AYD A;  2EHF A;  2RLP A;  3M7P A;  1H04 P;  3OED C;  5HYU B;  5HYT B;  4B2R A;  1PPQ A;  1SS2 A;  2ERJ A;  1G4G A;  4C16 A;  1TPM A;  1H2P P;  4PZ5 A;  4LOS A;  3R62 A;  1C1Z A;  2RLQ A;  2WII C;  1HFI A;  1OK9 A;  2W81 A;  3IU3 I;  3KZJ A;  4JHS A;  4KKD A;  1HFH A;  2IZ4 A;  3OXU D;  4ZH1 D;  2XWB F;  4J38 B;  2EC3 A;  2G7I A;  2CG7 A;  5FO8 C;  3IX0 A;  3KXV A;  3ZRZ A;  4YNX A;  2XQW C;  1GPZ A;  1OJY A;  1ZJK A;  2RKY A;  1GKN A;  2CKU A;  2UWN A;  4B2S A;  1CKL A;  2CG6 A;  4LOT A;  3T5O A;  2W80 A;  3O8E B;  3INB C;  1UOT P;  5HZP B;  1NWV A;  4AYI A;  4A5W B;  1GHQ B;  1Z92 B;  1U5M A;  2IZ3 A;  2JGW A;  2KMS A;  1FBR A;  3MQL A;  2KRI A;  3ZD1 A;  2A55 A;  2YBY A;  1O9A A;  4IGD A;  1QGB A;  3ERB A;  5HYP A;  5JPM G;  1QO6 A;  2RKZ A;  1ELV A;  3RJ3 D;  1G4F A;  1OK2 A;  2MCY A;  2MCZ A;  3ZD2 A;  2XRD A;  4AYE A;  2LOJ A;  1E8B A;  1OJW A;  4CSY A;  1H2Q P;  1E88 A;  1HCC A;  1MD8 A;  2QY0 A;  1OJV A;  4WJG 2;  1H03 P;  5I0Q B;  1TPG A;  3EJH A;  3TVJ A;  1TPN A;  2XRB A;  4MUC A;  3L89 M;  3OP8 A;  1VVD A;  4DJZ A;  2O39 C;  4F4O C;  1MD7 A;  1QUB A;  3SW0 X;  1VVC A;  2XWJ I;  2BZM A;  3CAL A;  1Q3X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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