2JRAA

A novel domain-swapped solution nmr structure of protein rpa2121 from rhodopseudomonas palustris. northeast structural genomics target rpt6
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
67
structure length
67
Chain Sequence
MMTASDRLGADPTQAASSPGGARAVSIVGNQIDSRELFTVDREIVIAHGDDRYRLRLTSQNKLILTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYO1 (11-13)O2 (15-17)AH1 (34-38)TVIII1 (20-23)TIV3 (38-41)TIV1 (27-30)TIV2 (28-31)S2 (51-58)TIV5 (58-61)S3 (62-66)S1 (43-48)Updating...
connected with : NaN
molecule tags Structural genomics, unknown function
source organism Rhodopseudomonas palustris
publication title A novel domain-swapped solution NMR structure of protein RPA2121 from Rhodopseudomonas palustris.
rcsb
molecule keywords Protein RPA2121
total genus 5
structure length 67
sequence length 67
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10636 hemP Hemin uptake protein hemP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2jraA01
1OK3A 2UWNA 1E88A 2V8EA 2RKZA 2RLQA 1Q3XA 2YBYA 2XWBF 1SRZA 1TPMA 2JGXA 3IX0A 2BZMA 1C1ZA 1E8BA 1ZJKA 3T5OA 5HYUB 1GKGA 2RLPA 1SS2A 3GOVA 4WJG2 1OJYA 1ELVA 4ONTD 2O39C 1U5MA 3OEDC 4MUCA 1GKNA 1NWVA 2XRDA 1TPGA 4FXGG 2G7IA 1FBRA 1H2QP 3ERBA 4B2RA 1OK1A 4A5WB 1OK2A 1QUBA 1HFHA 1H04P 3IU3I 2MCZA 2A55A 3GXEA 3ZD1A 3KZJA 1OJVA 5I0QB 2B5ID 2RL0A 1TPNA 4KKDA 1PPQA 5HYTB 3M7PA 4PZ5A 4IGDA 2ERJA 5JPMG 4LOSA 1GPZA 4C16A 1HFIA 2CG7A 2IZ3A 2LOJA 3NFPI 4AYEA 1G4FA 4LOTA 1QO6A 1OK9A 2EHFA 3CALA 1OJWA 2JGWA 2QY0A 1MD8A 4B2SA 1LY2A 3OP8A 4CSYA 1UOTP 5FO8C 4F4OC 5HZPB 3SW0X 4AYDA 1H03P 1O9AA 4K12A 4AYMA 3EJHA 2YRAA 3INBC 3ZD2A 2EC3A 3R62A 5HYPA 4J38B 3MQLA 2MCYA 2XQWC 3L89M 1CKLA 3RJ3D 1HCCA 3KXVA 2WIIC 1Z92B 1GHQB 1H2PP 3O8EB 1VVCA 2CG6A 2XRBA 1G4GA 1VVDA 2KRIA 2KMSA 3ZRZA 2RKYA 2XWJI 4YNXA 4AYIA 2CKUA 2W81A 1QGBA 4JHSA 2JRAA 2W80A 3TVJA 1E5GA 4ZH1D 1MD7A 4DJZA 3OXUD 2IZ4A
chains in the Genus database with same CATH superfamily
4YIZA 1OK3A 2UWNA 1E88A 2V8EA 2RKZA 2RLQA 4APLA 1Q3XA 4BWCA 2YBYA 2XWBF 1SRZA 3ZLEA 1TPMA 2JGXA 3K3TA 2X2ZA 3IX0A 2BZMA 1C1ZA 1E8BA 1ZJKA 3T5OA 5HYUB 1GKGA 2RLPA 1SS2A 3GOVA 4N7EA 4WJG2 1OJYA 1ELVA 4ONTD 2O39C 1U5MA 3OEDC 4MUCA 1GKNA 1NWVA 2XRDA 1TPGA 4FXGG 2G7IA 1FBRA 1H2QP 3ERBA 4B2RA 1OK1A 4A5WB 1OK2A 1QUBA 1HFHA 1H04P 4MSLA 3IU3I 3WSYA 2MCZA 2A55A 3GXEA 3ZD1A 3KZJA 1OJVA 3FGTA 5I0QB 2B5ID 2RL0A 2Y8SA 1TPNA 4KKDA 1PPQA 5DN4A 5HYTB 3M7PA 4PZ5A 4IGDA 2ERJA 5JPMG 4LOSA 1GPZA 4C16A 2Y8TA 3FGRA 1HFIA 2CG7A 2IZ3A 2LOJA 3NFPI 4AYEA 1G4FA 4LOTA 3F6KA 1QO6A 1OK9A 2EHFA 3NJAA 3CALA 1OJWA 2JGWA 5DN5A 2QY0A 1MD8A 4B2SA 1LY2A 3OP8A 4CSYA 1UOTP 5FO8C 4F4OC 5HZPB 3SW0X 4AYDA 1H03P 1O9AA 4K12A 4AYMA 2ZYCA 2Y8RA 3EJHA 4PO7A 2YRAA 3INBC 3ZD2A 2EC3A 3R62A 5HYPA 4J38B 3MQLA 2MCYA 3ZLDA 1RLHA 2XQWC 3L89M 1CKLA 3RJ3D 1HCCA 3KXVA 2WIIC 1Z92B 3VWOA 1GHQB 1H2PP 3CI0J 3O8EB 1VVCA 2CG6A 2XRBA 1G4GA 1VVDA 2KRIA 2KMSA 3WSXA 3ZRZA 2RKYA 2XWJI 4YNXA 4AYIA 2CKUA 2W81A 1QGBA 4JHSA 2JRAA 2W80A 3TVJA 1E5GA 4ZH1D 2I2LA 1MD7A 4DJZA 3OXUD 2IZ4A
chains in the Genus database with same CATH topology
1OK3A 2UWNA 1E88A 2V8EA 2RKZA 2RLQA 1Q3XA 2YBYA 2XWBF 1SRZA 1TPMA 2JGXA 3IX0A 2BZMA 1C1ZA 1E8BA 1ZJKA 3T5OA 5HYUB 1GKGA 2RLPA 1SS2A 3GOVA 4WJG2 1OJYA 1ELVA 4ONTD 2O39C 1U5MA 3OEDC 4MUCA 1GKNA 1NWVA 2XRDA 1TPGA 4FXGG 2G7IA 1FBRA 1H2QP 3ERBA 4B2RA 1OK1A 4A5WB 1OK2A 1QUBA 1HFHA 1H04P 3IU3I 2MCZA 2A55A 3GXEA 3ZD1A 3KZJA 1OJVA 5I0QB 2B5ID 2RL0A 1TPNA 4KKDA 1PPQA 5HYTB 3M7PA 4PZ5A 4IGDA 2ERJA 5JPMG 4LOSA 1GPZA 4C16A 1HFIA 2CG7A 2IZ3A 2LOJA 3NFPI 4AYEA 1G4FA 4LOTA 1QO6A 1OK9A 2EHFA 3CALA 1OJWA 2JGWA 2QY0A 1MD8A 4B2SA 1LY2A 3OP8A 4CSYA 1UOTP 5FO8C 4F4OC 5HZPB 3SW0X 4AYDA 1H03P 1O9AA 4K12A 4AYMA 3EJHA 2YRAA 3INBC 3ZD2A 2EC3A 3R62A 5HYPA 4J38B 3MQLA 2MCYA 2XQWC 3L89M 1CKLA 3RJ3D 1HCCA 3KXVA 2WIIC 1Z92B 1GHQB 1H2PP 3O8EB 1VVCA 2CG6A 2XRBA 1G4GA 1VVDA 2KRIA 2KMSA 3ZRZA 2RKYA 2XWJI 4YNXA 4AYIA 2CKUA 2W81A 1QGBA 4JHSA 2JRAA 2W80A 3TVJA 1E5GA 4ZH1D 1MD7A 4DJZA 3OXUD 2IZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OK3 A;  2UWN A;  1E88 A;  2V8E A;  2RKZ A;  2RLQ A;  1Q3X A;  2YBY A;  2XWB F;  1SRZ A;  1TPM A;  2JGX A;  3IX0 A;  2BZM A;  1C1Z A;  1E8B A;  1ZJK A;  3T5O A;  5HYU B;  1GKG A;  2RLP A;  1SS2 A;  3GOV A;  4WJG 2;  1OJY A;  1ELV A;  4ONT D;  2O39 C;  1U5M A;  3OED C;  4MUC A;  1GKN A;  1NWV A;  2XRD A;  1TPG A;  4FXG G;  2G7I A;  1FBR A;  1H2Q P;  3ERB A;  4B2R A;  1OK1 A;  4A5W B;  1OK2 A;  1QUB A;  1HFH A;  1H04 P;  3IU3 I;  2MCZ A;  2A55 A;  3GXE A;  3ZD1 A;  3KZJ A;  1OJV A;  5I0Q B;  2B5I D;  2RL0 A;  1TPN A;  4KKD A;  1PPQ A;  5HYT B;  3M7P A;  4PZ5 A;  4IGD A;  2ERJ A;  5JPM G;  4LOS A;  1GPZ A;  4C16 A;  1HFI A;  2CG7 A;  2IZ3 A;  2LOJ A;  3NFP I;  4AYE A;  1G4F A;  4LOT A;  1QO6 A;  1OK9 A;  2EHF A;  3CAL A;  1OJW A;  2JGW A;  2QY0 A;  1MD8 A;  4B2S A;  1LY2 A;  3OP8 A;  4CSY A;  1UOT P;  5FO8 C;  4F4O C;  5HZP B;  3SW0 X;  4AYD A;  1H03 P;  1O9A A;  4K12 A;  4AYM A;  3EJH A;  2YRA A;  3INB C;  3ZD2 A;  2EC3 A;  3R62 A;  5HYP A;  4J38 B;  3MQL A;  2MCY A;  2XQW C;  3L89 M;  1CKL A;  3RJ3 D;  1HCC A;  3KXV A;  2WII C;  1Z92 B;  1GHQ B;  1H2P P;  3O8E B;  1VVC A;  2CG6 A;  2XRB A;  1G4G A;  1VVD A;  2KRI A;  2KMS A;  3ZRZ A;  2RKY A;  2XWJ I;  4YNX A;  4AYI A;  2CKU A;  2W81 A;  1QGB A;  4JHS A;  2JRA A;  2W80 A;  3TVJ A;  1E5G A;  4ZH1 D;  1MD7 A;  4DJZ A;  3OXU D;  2IZ4 A; 
#chains in the Genus database with same CATH topology
 4YIZ A;  1OK3 A;  2UWN A;  1E88 A;  2V8E A;  2RKZ A;  2RLQ A;  4APL A;  1Q3X A;  4BWC A;  2YBY A;  2XWB F;  1SRZ A;  3ZLE A;  1TPM A;  2JGX A;  3K3T A;  2X2Z A;  3IX0 A;  2BZM A;  1C1Z A;  1E8B A;  1ZJK A;  3T5O A;  5HYU B;  1GKG A;  2RLP A;  1SS2 A;  3GOV A;  4N7E A;  4WJG 2;  1OJY A;  1ELV A;  4ONT D;  2O39 C;  1U5M A;  3OED C;  4MUC A;  1GKN A;  1NWV A;  2XRD A;  1TPG A;  4FXG G;  2G7I A;  1FBR A;  1H2Q P;  3ERB A;  4B2R A;  1OK1 A;  4A5W B;  1OK2 A;  1QUB A;  1HFH A;  1H04 P;  4MSL A;  3IU3 I;  3WSY A;  2MCZ A;  2A55 A;  3GXE A;  3ZD1 A;  3KZJ A;  1OJV A;  3FGT A;  5I0Q B;  2B5I D;  2RL0 A;  2Y8S A;  1TPN A;  4KKD A;  1PPQ A;  5DN4 A;  5HYT B;  3M7P A;  4PZ5 A;  4IGD A;  2ERJ A;  5JPM G;  4LOS A;  1GPZ A;  4C16 A;  2Y8T A;  3FGR A;  1HFI A;  2CG7 A;  2IZ3 A;  2LOJ A;  3NFP I;  4AYE A;  1G4F A;  4LOT A;  3F6K A;  1QO6 A;  1OK9 A;  2EHF A;  3NJA A;  3CAL A;  1OJW A;  2JGW A;  5DN5 A;  2QY0 A;  1MD8 A;  4B2S A;  1LY2 A;  3OP8 A;  4CSY A;  1UOT P;  5FO8 C;  4F4O C;  5HZP B;  3SW0 X;  4AYD A;  1H03 P;  1O9A A;  4K12 A;  4AYM A;  2ZYC A;  2Y8R A;  3EJH A;  4PO7 A;  2YRA A;  3INB C;  3ZD2 A;  2EC3 A;  3R62 A;  5HYP A;  4J38 B;  3MQL A;  2MCY A;  3ZLD A;  1RLH A;  2XQW C;  3L89 M;  1CKL A;  3RJ3 D;  1HCC A;  3KXV A;  2WII C;  1Z92 B;  3VWO A;  1GHQ B;  1H2P P;  3CI0 J;  3O8E B;  1VVC A;  2CG6 A;  2XRB A;  1G4G A;  1VVD A;  2KRI A;  2KMS A;  3WSX A;  3ZRZ A;  2RKY A;  2XWJ I;  4YNX A;  4AYI A;  2CKU A;  2W81 A;  1QGB A;  4JHS A;  2JRA A;  2W80 A;  3TVJ A;  1E5G A;  4ZH1 D;  2I2L A;  1MD7 A;  4DJZ A;  3OXU D;  2IZ4 A; 
#chains in the Genus database with same CATH homology
 1OK3 A;  2UWN A;  1E88 A;  2V8E A;  2RKZ A;  2RLQ A;  1Q3X A;  2YBY A;  2XWB F;  1SRZ A;  1TPM A;  2JGX A;  3IX0 A;  2BZM A;  1C1Z A;  1E8B A;  1ZJK A;  3T5O A;  5HYU B;  1GKG A;  2RLP A;  1SS2 A;  3GOV A;  4WJG 2;  1OJY A;  1ELV A;  4ONT D;  2O39 C;  1U5M A;  3OED C;  4MUC A;  1GKN A;  1NWV A;  2XRD A;  1TPG A;  4FXG G;  2G7I A;  1FBR A;  1H2Q P;  3ERB A;  4B2R A;  1OK1 A;  4A5W B;  1OK2 A;  1QUB A;  1HFH A;  1H04 P;  3IU3 I;  2MCZ A;  2A55 A;  3GXE A;  3ZD1 A;  3KZJ A;  1OJV A;  5I0Q B;  2B5I D;  2RL0 A;  1TPN A;  4KKD A;  1PPQ A;  5HYT B;  3M7P A;  4PZ5 A;  4IGD A;  2ERJ A;  5JPM G;  4LOS A;  1GPZ A;  4C16 A;  1HFI A;  2CG7 A;  2IZ3 A;  2LOJ A;  3NFP I;  4AYE A;  1G4F A;  4LOT A;  1QO6 A;  1OK9 A;  2EHF A;  3CAL A;  1OJW A;  2JGW A;  2QY0 A;  1MD8 A;  4B2S A;  1LY2 A;  3OP8 A;  4CSY A;  1UOT P;  5FO8 C;  4F4O C;  5HZP B;  3SW0 X;  4AYD A;  1H03 P;  1O9A A;  4K12 A;  4AYM A;  3EJH A;  2YRA A;  3INB C;  3ZD2 A;  2EC3 A;  3R62 A;  5HYP A;  4J38 B;  3MQL A;  2MCY A;  2XQW C;  3L89 M;  1CKL A;  3RJ3 D;  1HCC A;  3KXV A;  2WII C;  1Z92 B;  1GHQ B;  1H2P P;  3O8E B;  1VVC A;  2CG6 A;  2XRB A;  1G4G A;  1VVD A;  2KRI A;  2KMS A;  3ZRZ A;  2RKY A;  2XWJ I;  4YNX A;  4AYI A;  2CKU A;  2W81 A;  1QGB A;  4JHS A;  2JRA A;  2W80 A;  3TVJ A;  1E5G A;  4ZH1 D;  1MD7 A;  4DJZ A;  3OXU D;  2IZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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