2KRIA

Structure of a complex between domain v of beta2-glycoprotein i and the fourth ligand-binding module from ldlr determined with haddock
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
82
structure length
82
Chain Sequence
CKLPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDASDVKPC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Mode of interaction between beta2GPI and lipoprotein receptors suggests mutually exclusive binding of beta2GPI to the receptors and anionic phospholipids.
pubmed doi rcsb
molecule tags Protein binding/endocytosis
source organism Homo sapiens
molecule keywords Beta-2-glycoprotein 1
total genus 11
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2009-12-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 2kriA00
1ZJKA 2LOJA 2XRBA 3MQLA 3OEDC 3KXVA 3O8EB 1ELVA 1MD8A 4MUCA 1H03P 5FO8C 3KZJA 1OK9A 1FBRA 1CKLA 1LY2A 2KMSA 4K12A 3TVJA 1SRZA 1OK3A 2RKZA 1HCCA 1H2QP 2CKUA 4PZ5A 4ONTD 4WJG2 1NWVA 4LOSA 3GOVA 4J38B 4AYEA 2UWNA 1OJYA 2CG7A 5HZPB 1OJWA 1QO6A 1Z92B 2JGXA 1VVDA 2BZMA 5HYUB 4AYMA 1GPZA 5JPMG 2B5ID 2A55A 2XRDA 4IGDA 1HFIA 2JGWA 4ZH1D 3NFPI 3ZRZA 5HYPA 3SW0X 1HFHA 2QY0A 2W81A 2V8EA 2ERJA 2RLQA 4F4OC 1OK1A 1G4FA 1GKGA 2XWJI 4DJZA 1UOTP 2JRAA 1QUBA 1GHQB 3ZD1A 2IZ4A 1H2PP 1E5GA 4AYIA 2RLPA 4KKDA 2MCZA 2KRIA 4JHSA 1E8BA 3ERBA 2CG6A 1GKNA 4A5WB 2RL0A 1QGBA 3IU3I 3RJ3D 3EJHA 3INBC 1SS2A 4B2RA 1OK2A 2W80A 1Q3XA 1H04P 3R62A 4YNXA 2YBYA 1OJVA 2XQWC 3CALA 2RKYA 2EHFA 1TPNA 1TPMA 2IZ3A 3OP8A 4B2SA 4AYDA 4LOTA 1TPGA 1PPQA 1O9AA 3ZD2A 2MCYA 5I0QB 1VVCA 1U5MA 5HYTB 3IX0A 4FXGG 2WIIC 3T5OA 4C16A 3OXUD 4CSYA 2EC3A 3L89M 2O39C 3M7PA 1E88A 2XWBF 2G7IA 2YRAA 1MD7A 1C1ZA 1G4GA 3GXEA
chains in the Genus database with same CATH superfamily
1ZJKA 2LOJA 4BWCA 2XRBA 3MQLA 3OEDC 3KXVA 2Y8RA 3K3TA 3O8EB 1ELVA 3WSYA 1MD8A 4MUCA 3ZLDA 1H03P 5FO8C 3KZJA 1OK9A 1FBRA 1CKLA 1LY2A 2KMSA 4K12A 3TVJA 1SRZA 1OK3A 2RKZA 1HCCA 1H2QP 2CKUA 4PZ5A 4ONTD 4WJG2 1NWVA 4LOSA 1RLHA 3GOVA 4J38B 4AYEA 2UWNA 2Y8TA 5DN5A 3WSXA 1OJYA 2CG7A 5HZPB 1OJWA 1QO6A 1Z92B 2JGXA 1VVDA 2BZMA 5HYUB 4AYMA 1GPZA 5JPMG 2B5ID 2A55A 2XRDA 3CI0J 4IGDA 1HFIA 2JGWA 4ZH1D 3NFPI 3ZLEA 2I2LA 3ZRZA 5HYPA 3SW0X 1HFHA 2QY0A 3NJAA 2W81A 2V8EA 2ERJA 2RLQA 4F4OC 1OK1A 1G4FA 3VWOA 1GKGA 2XWJI 4DJZA 4PO7A 1UOTP 2JRAA 1QUBA 3FGTA 4N7EA 1GHQB 3ZD1A 2IZ4A 1H2PP 1E5GA 4AYIA 2RLPA 4KKDA 2MCZA 2KRIA 4JHSA 3FGRA 1E8BA 3ERBA 5DN4A 2CG6A 1GKNA 4A5WB 4APLA 2RL0A 1QGBA 3IU3I 3RJ3D 2ZYCA 3EJHA 3INBC 1SS2A 4B2RA 1OK2A 2W80A 2X2ZA 1Q3XA 1H04P 3R62A 4YNXA 2YBYA 1OJVA 2XQWC 3CALA 2RKYA 2EHFA 1TPNA 1TPMA 2IZ3A 3OP8A 4B2SA 4AYDA 4LOTA 1TPGA 1PPQA 1O9AA 3ZD2A 2MCYA 5I0QB 1VVCA 4YIZA 1U5MA 5HYTB 3IX0A 4FXGG 2WIIC 3T5OA 2Y8SA 4C16A 3OXUD 4CSYA 2EC3A 3L89M 2O39C 3M7PA 1E88A 2XWBF 2G7IA 2YRAA 4MSLA 1MD7A 1C1ZA 3F6KA 1G4GA 3GXEA
chains in the Genus database with same CATH topology
1ZJKA 2LOJA 2XRBA 3MQLA 3OEDC 3KXVA 3O8EB 1ELVA 1MD8A 4MUCA 1H03P 5FO8C 3KZJA 1OK9A 1FBRA 1CKLA 1LY2A 2KMSA 4K12A 3TVJA 1SRZA 1OK3A 2RKZA 1HCCA 1H2QP 2CKUA 4PZ5A 4ONTD 4WJG2 1NWVA 4LOSA 3GOVA 4J38B 4AYEA 2UWNA 1OJYA 2CG7A 5HZPB 1OJWA 1QO6A 1Z92B 2JGXA 1VVDA 2BZMA 5HYUB 4AYMA 1GPZA 5JPMG 2B5ID 2A55A 2XRDA 4IGDA 1HFIA 2JGWA 4ZH1D 3NFPI 3ZRZA 5HYPA 3SW0X 1HFHA 2QY0A 2W81A 2V8EA 2ERJA 2RLQA 4F4OC 1OK1A 1G4FA 1GKGA 2XWJI 4DJZA 1UOTP 2JRAA 1QUBA 1GHQB 3ZD1A 2IZ4A 1H2PP 1E5GA 4AYIA 2RLPA 4KKDA 2MCZA 2KRIA 4JHSA 1E8BA 3ERBA 2CG6A 1GKNA 4A5WB 2RL0A 1QGBA 3IU3I 3RJ3D 3EJHA 3INBC 1SS2A 4B2RA 1OK2A 2W80A 1Q3XA 1H04P 3R62A 4YNXA 2YBYA 1OJVA 2XQWC 3CALA 2RKYA 2EHFA 1TPNA 1TPMA 2IZ3A 3OP8A 4B2SA 4AYDA 4LOTA 1TPGA 1PPQA 1O9AA 3ZD2A 2MCYA 5I0QB 1VVCA 1U5MA 5HYTB 3IX0A 4FXGG 2WIIC 3T5OA 4C16A 3OXUD 4CSYA 2EC3A 3L89M 2O39C 3M7PA 1E88A 2XWBF 2G7IA 2YRAA 1MD7A 1C1ZA 1G4GA 3GXEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZJK A;  2LOJ A;  2XRB A;  3MQL A;  3OED C;  3KXV A;  3O8E B;  1ELV A;  1MD8 A;  4MUC A;  1H03 P;  5FO8 C;  3KZJ A;  1OK9 A;  1FBR A;  1CKL A;  1LY2 A;  2KMS A;  4K12 A;  3TVJ A;  1SRZ A;  1OK3 A;  2RKZ A;  1HCC A;  1H2Q P;  2CKU A;  4PZ5 A;  4ONT D;  4WJG 2;  1NWV A;  4LOS A;  3GOV A;  4J38 B;  4AYE A;  2UWN A;  1OJY A;  2CG7 A;  5HZP B;  1OJW A;  1QO6 A;  1Z92 B;  2JGX A;  1VVD A;  2BZM A;  5HYU B;  4AYM A;  1GPZ A;  5JPM G;  2B5I D;  2A55 A;  2XRD A;  4IGD A;  1HFI A;  2JGW A;  4ZH1 D;  3NFP I;  3ZRZ A;  5HYP A;  3SW0 X;  1HFH A;  2QY0 A;  2W81 A;  2V8E A;  2ERJ A;  2RLQ A;  4F4O C;  1OK1 A;  1G4F A;  1GKG A;  2XWJ I;  4DJZ A;  1UOT P;  2JRA A;  1QUB A;  1GHQ B;  3ZD1 A;  2IZ4 A;  1H2P P;  1E5G A;  4AYI A;  2RLP A;  4KKD A;  2MCZ A;  2KRI A;  4JHS A;  1E8B A;  3ERB A;  2CG6 A;  1GKN A;  4A5W B;  2RL0 A;  1QGB A;  3IU3 I;  3RJ3 D;  3EJH A;  3INB C;  1SS2 A;  4B2R A;  1OK2 A;  2W80 A;  1Q3X A;  1H04 P;  3R62 A;  4YNX A;  2YBY A;  1OJV A;  2XQW C;  3CAL A;  2RKY A;  2EHF A;  1TPN A;  1TPM A;  2IZ3 A;  3OP8 A;  4B2S A;  4AYD A;  4LOT A;  1TPG A;  1PPQ A;  1O9A A;  3ZD2 A;  2MCY A;  5I0Q B;  1VVC A;  1U5M A;  5HYT B;  3IX0 A;  4FXG G;  2WII C;  3T5O A;  4C16 A;  3OXU D;  4CSY A;  2EC3 A;  3L89 M;  2O39 C;  3M7P A;  1E88 A;  2XWB F;  2G7I A;  2YRA A;  1MD7 A;  1C1Z A;  1G4G A;  3GXE A; 
#chains in the Genus database with same CATH topology
 1ZJK A;  2LOJ A;  4BWC A;  2XRB A;  3MQL A;  3OED C;  3KXV A;  2Y8R A;  3K3T A;  3O8E B;  1ELV A;  3WSY A;  1MD8 A;  4MUC A;  3ZLD A;  1H03 P;  5FO8 C;  3KZJ A;  1OK9 A;  1FBR A;  1CKL A;  1LY2 A;  2KMS A;  4K12 A;  3TVJ A;  1SRZ A;  1OK3 A;  2RKZ A;  1HCC A;  1H2Q P;  2CKU A;  4PZ5 A;  4ONT D;  4WJG 2;  1NWV A;  4LOS A;  1RLH A;  3GOV A;  4J38 B;  4AYE A;  2UWN A;  2Y8T A;  5DN5 A;  3WSX A;  1OJY A;  2CG7 A;  5HZP B;  1OJW A;  1QO6 A;  1Z92 B;  2JGX A;  1VVD A;  2BZM A;  5HYU B;  4AYM A;  1GPZ A;  5JPM G;  2B5I D;  2A55 A;  2XRD A;  3CI0 J;  4IGD A;  1HFI A;  2JGW A;  4ZH1 D;  3NFP I;  3ZLE A;  2I2L A;  3ZRZ A;  5HYP A;  3SW0 X;  1HFH A;  2QY0 A;  3NJA A;  2W81 A;  2V8E A;  2ERJ A;  2RLQ A;  4F4O C;  1OK1 A;  1G4F A;  3VWO A;  1GKG A;  2XWJ I;  4DJZ A;  4PO7 A;  1UOT P;  2JRA A;  1QUB A;  3FGT A;  4N7E A;  1GHQ B;  3ZD1 A;  2IZ4 A;  1H2P P;  1E5G A;  4AYI A;  2RLP A;  4KKD A;  2MCZ A;  2KRI A;  4JHS A;  3FGR A;  1E8B A;  3ERB A;  5DN4 A;  2CG6 A;  1GKN A;  4A5W B;  4APL A;  2RL0 A;  1QGB A;  3IU3 I;  3RJ3 D;  2ZYC A;  3EJH A;  3INB C;  1SS2 A;  4B2R A;  1OK2 A;  2W80 A;  2X2Z A;  1Q3X A;  1H04 P;  3R62 A;  4YNX A;  2YBY A;  1OJV A;  2XQW C;  3CAL A;  2RKY A;  2EHF A;  1TPN A;  1TPM A;  2IZ3 A;  3OP8 A;  4B2S A;  4AYD A;  4LOT A;  1TPG A;  1PPQ A;  1O9A A;  3ZD2 A;  2MCY A;  5I0Q B;  1VVC A;  4YIZ A;  1U5M A;  5HYT B;  3IX0 A;  4FXG G;  2WII C;  3T5O A;  2Y8S A;  4C16 A;  3OXU D;  4CSY A;  2EC3 A;  3L89 M;  2O39 C;  3M7P A;  1E88 A;  2XWB F;  2G7I A;  2YRA A;  4MSL A;  1MD7 A;  1C1Z A;  3F6K A;  1G4G A;  3GXE A; 
#chains in the Genus database with same CATH homology
 1ZJK A;  2LOJ A;  2XRB A;  3MQL A;  3OED C;  3KXV A;  3O8E B;  1ELV A;  1MD8 A;  4MUC A;  1H03 P;  5FO8 C;  3KZJ A;  1OK9 A;  1FBR A;  1CKL A;  1LY2 A;  2KMS A;  4K12 A;  3TVJ A;  1SRZ A;  1OK3 A;  2RKZ A;  1HCC A;  1H2Q P;  2CKU A;  4PZ5 A;  4ONT D;  4WJG 2;  1NWV A;  4LOS A;  3GOV A;  4J38 B;  4AYE A;  2UWN A;  1OJY A;  2CG7 A;  5HZP B;  1OJW A;  1QO6 A;  1Z92 B;  2JGX A;  1VVD A;  2BZM A;  5HYU B;  4AYM A;  1GPZ A;  5JPM G;  2B5I D;  2A55 A;  2XRD A;  4IGD A;  1HFI A;  2JGW A;  4ZH1 D;  3NFP I;  3ZRZ A;  5HYP A;  3SW0 X;  1HFH A;  2QY0 A;  2W81 A;  2V8E A;  2ERJ A;  2RLQ A;  4F4O C;  1OK1 A;  1G4F A;  1GKG A;  2XWJ I;  4DJZ A;  1UOT P;  2JRA A;  1QUB A;  1GHQ B;  3ZD1 A;  2IZ4 A;  1H2P P;  1E5G A;  4AYI A;  2RLP A;  4KKD A;  2MCZ A;  2KRI A;  4JHS A;  1E8B A;  3ERB A;  2CG6 A;  1GKN A;  4A5W B;  2RL0 A;  1QGB A;  3IU3 I;  3RJ3 D;  3EJH A;  3INB C;  1SS2 A;  4B2R A;  1OK2 A;  2W80 A;  1Q3X A;  1H04 P;  3R62 A;  4YNX A;  2YBY A;  1OJV A;  2XQW C;  3CAL A;  2RKY A;  2EHF A;  1TPN A;  1TPM A;  2IZ3 A;  3OP8 A;  4B2S A;  4AYD A;  4LOT A;  1TPG A;  1PPQ A;  1O9A A;  3ZD2 A;  2MCY A;  5I0Q B;  1VVC A;  1U5M A;  5HYT B;  3IX0 A;  4FXG G;  2WII C;  3T5O A;  4C16 A;  3OXU D;  4CSY A;  2EC3 A;  3L89 M;  2O39 C;  3M7P A;  1E88 A;  2XWB F;  2G7I A;  2YRA A;  1MD7 A;  1C1Z A;  1G4G A;  3GXE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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