2LOJ | Genus

Total Genus 8

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	8
sequence length	63
structure length	63
Chain Sequence	MSRMDNTELPHPKEIDNETLLPAAERRVNSQALLGPDGKVIIDHNGQEYLLRKTQAGKLLLTK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 63 atoms

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63 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Salmonella enterica subsp. enterica serovar typhimurium
publication title	Solution NMR structure of TSTM1273 from Salmonella typhimurium LT2, NESG target STT322, CSGID target IDP01027 and OCSP target TSTM1273 rcsb
molecule keywords	Putative cytoplasmic protein
total genus	8
structure length	63
sequence length	63
ec nomenclature
pdb deposition date	2012-01-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10636	hemP	Hemin uptake protein hemP

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.70.10	Mainly Beta	Ribbon	Complement Module; domain 1	Complement Module, domain 1	2lojA01

3MQLA 1GKNA 2ERJA 4JHSA 4LOSA 1H04P 1U5MA 4K12A 4PZ5A 4F4OC 3NFPI 1C1ZA 4LOTA 2RKZA 2RLPA 1H03P 4CSYA 3IX0A 4AYEA 1GPZA 2B5ID 4AYDA 3KZJA 2JGWA 3RJ3D 2A55A 2MCYA 2BZMA 2CG6A 5HZPB 3OP8A 1SRZA 2RL0A 1QO6A 1GKGA 2EHFA 1OK9A 4AYIA 2XRDA 1GHQB 2KRIA 3CALA 2W80A 3GOVA 3ERBA 3O8EB 1TPNA 3KXVA 3GXEA 3R62A 1CKLA 2IZ4A 2EC3A 2QY0A 2RKYA 2JRAA 1OJYA 2CKUA 1PPQA 5HYTB 5JPMG 5FO8C 2MCZA 4FXGG 1OJVA 1SS2A 3T5OA 3L89M 1HFHA 5HYUB 2W81A 2XQWC 1HFIA 2G7IA 1Z92B 4J38B 1FBRA 1Q3XA 3EJHA 4ONTD 1LY2A 1VVDA 1NWVA 1TPMA 1G4GA 4WJG2 3OXUD 3M7PA 2UWNA 2WIIC 3ZD2A 2KMSA 3SW0X 4DJZA 1QUBA 3ZRZA 3IU3I 4ZH1D 1O9AA 4IGDA 3ZD1A 1TPGA 1MD7A 2YRAA 4C16A 2O39C 4AYMA 5I0QB 1E88A 1G4FA 4A5WB 1H2QP 3INBC 2CG7A 1ZJKA 1OK3A 1OJWA 1OK1A 4YNXA 4B2SA 1MD8A 1E5GA 2LOJA 2XWBF 2JGXA 4MUCA 1E8BA 1H2PP 1QGBA 2XWJI 2RLQA 3OEDC 1UOTP 3TVJA 1ELVA 2XRBA 1HCCA 1OK2A 2V8EA 4KKDA 5HYPA 2YBYA 1VVCA 2IZ3A 4B2RA
chains in the Genus database with same CATH superfamily

3ZLDA 3MQLA 1GKNA 2ERJA 4JHSA 4LOSA 1H04P 1U5MA 4K12A 4PZ5A 4F4OC 3NFPI 1C1ZA 3VWOA 3WSYA 3NJAA 2RKZA 4LOTA 2RLPA 3WSXA 4BWCA 1H03P 4CSYA 3IX0A 4AYEA 3FGRA 1GPZA 5DN5A 2Y8RA 2B5ID 4AYDA 3KZJA 2JGWA 3RJ3D 2A55A 2X2ZA 2MCYA 2BZMA 2CG6A 5HZPB 3OP8A 1SRZA 2RL0A 1QO6A 1GKGA 2EHFA 1OK9A 4AYIA 2XRDA 1GHQB 2KRIA 3CALA 2W80A 3GOVA 3CI0J 3ERBA 3ZLEA 3O8EB 1TPNA 3KXVA 3GXEA 4N7EA 3R62A 1CKLA 2IZ4A 2EC3A 2QY0A 2RKYA 2JRAA 1OJYA 2CKUA 1PPQA 5HYTB 5JPMG 5FO8C 2MCZA 4YIZA 4FXGG 1OJVA 1SS2A 3T5OA 3L89M 1HFHA 5HYUB 2W81A 2XQWC 1HFIA 2G7IA 1Z92B 4J38B 1FBRA 1Q3XA 3EJHA 4ONTD 1LY2A 1VVDA 1NWVA 1TPMA 1G4GA 4WJG2 3OXUD 3M7PA 2UWNA 2WIIC 3ZD2A 2KMSA 4PO7A 4MSLA 3SW0X 4DJZA 1QUBA 3ZRZA 3IU3I 2Y8SA 4ZH1D 1O9AA 4IGDA 3ZD1A 1TPGA 3F6KA 1MD7A 2YRAA 4APLA 4C16A 2O39C 4AYMA 5I0QB 1E88A 1G4FA 4A5WB 2Y8TA 3FGTA 1H2QP 2I2LA 3INBC 2CG7A 1ZJKA 3K3TA 1OK3A 1OJWA 1OK1A 4YNXA 4B2SA 1MD8A 1E5GA 2LOJA 2XWBF 2JGXA 4MUCA 1E8BA 1H2PP 1QGBA 2XWJI 2RLQA 3OEDC 1UOTP 5DN4A 3TVJA 1ELVA 2XRBA 1HCCA 1OK2A 2V8EA 4KKDA 5HYPA 2YBYA 1RLHA 1VVCA 2IZ3A 4B2RA 2ZYCA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3MQL A;  1GKN A;  2ERJ A;  4JHS A;  4LOS A;  1H04 P;  1U5M A;  4K12 A;  4PZ5 A;  4F4O C;  3NFP I;  1C1Z A;  4LOT A;  2RKZ A;  2RLP A;  1H03 P;  4CSY A;  3IX0 A;  4AYE A;  1GPZ A;  2B5I D;  4AYD A;  3KZJ A;  2JGW A;  3RJ3 D;  2A55 A;  2MCY A;  2BZM A;  2CG6 A;  5HZP B;  3OP8 A;  1SRZ A;  2RL0 A;  1QO6 A;  1GKG A;  2EHF A;  1OK9 A;  4AYI A;  2XRD A;  1GHQ B;  2KRI A;  3CAL A;  2W80 A;  3GOV A;  3ERB A;  3O8E B;  1TPN A;  3KXV A;  3GXE A;  3R62 A;  1CKL A;  2IZ4 A;  2EC3 A;  2QY0 A;  2RKY A;  2JRA A;  1OJY A;  2CKU A;  1PPQ A;  5HYT B;  5JPM G;  5FO8 C;  2MCZ A;  4FXG G;  1OJV A;  1SS2 A;  3T5O A;  3L89 M;  1HFH A;  5HYU B;  2W81 A;  2XQW C;  1HFI A;  2G7I A;  1Z92 B;  4J38 B;  1FBR A;  1Q3X A;  3EJH A;  4ONT D;  1LY2 A;  1VVD A;  1NWV A;  1TPM A;  1G4G A;  4WJG 2;  3OXU D;  3M7P A;  2UWN A;  2WII C;  3ZD2 A;  2KMS A;  3SW0 X;  4DJZ A;  1QUB A;  3ZRZ A;  3IU3 I;  4ZH1 D;  1O9A A;  4IGD A;  3ZD1 A;  1TPG A;  1MD7 A;  2YRA A;  4C16 A;  2O39 C;  4AYM A;  5I0Q B;  1E88 A;  1G4F A;  4A5W B;  1H2Q P;  3INB C;  2CG7 A;  1ZJK A;  1OK3 A;  1OJW A;  1OK1 A;  4YNX A;  4B2S A;  1MD8 A;  1E5G A;  2LOJ A;  2XWB F;  2JGX A;  4MUC A;  1E8B A;  1H2P P;  1QGB A;  2XWJ I;  2RLQ A;  3OED C;  1UOT P;  3TVJ A;  1ELV A;  2XRB A;  1HCC A;  1OK2 A;  2V8E A;  4KKD A;  5HYP A;  2YBY A;  1VVC A;  2IZ3 A;  4B2R A; 
#chains in the Genus database with same CATH topology
 3ZLD A;  3MQL A;  1GKN A;  2ERJ A;  4JHS A;  4LOS A;  1H04 P;  1U5M A;  4K12 A;  4PZ5 A;  4F4O C;  3NFP I;  1C1Z A;  3VWO A;  3WSY A;  3NJA A;  2RKZ A;  4LOT A;  2RLP A;  3WSX A;  4BWC A;  1H03 P;  4CSY A;  3IX0 A;  4AYE A;  3FGR A;  1GPZ A;  5DN5 A;  2Y8R A;  2B5I D;  4AYD A;  3KZJ A;  2JGW A;  3RJ3 D;  2A55 A;  2X2Z A;  2MCY A;  2BZM A;  2CG6 A;  5HZP B;  3OP8 A;  1SRZ A;  2RL0 A;  1QO6 A;  1GKG A;  2EHF A;  1OK9 A;  4AYI A;  2XRD A;  1GHQ B;  2KRI A;  3CAL A;  2W80 A;  3GOV A;  3CI0 J;  3ERB A;  3ZLE A;  3O8E B;  1TPN A;  3KXV A;  3GXE A;  4N7E A;  3R62 A;  1CKL A;  2IZ4 A;  2EC3 A;  2QY0 A;  2RKY A;  2JRA A;  1OJY A;  2CKU A;  1PPQ A;  5HYT B;  5JPM G;  5FO8 C;  2MCZ A;  4YIZ A;  4FXG G;  1OJV A;  1SS2 A;  3T5O A;  3L89 M;  1HFH A;  5HYU B;  2W81 A;  2XQW C;  1HFI A;  2G7I A;  1Z92 B;  4J38 B;  1FBR A;  1Q3X A;  3EJH A;  4ONT D;  1LY2 A;  1VVD A;  1NWV A;  1TPM A;  1G4G A;  4WJG 2;  3OXU D;  3M7P A;  2UWN A;  2WII C;  3ZD2 A;  2KMS A;  4PO7 A;  4MSL A;  3SW0 X;  4DJZ A;  1QUB A;  3ZRZ A;  3IU3 I;  2Y8S A;  4ZH1 D;  1O9A A;  4IGD A;  3ZD1 A;  1TPG A;  3F6K A;  1MD7 A;  2YRA A;  4APL A;  4C16 A;  2O39 C;  4AYM A;  5I0Q B;  1E88 A;  1G4F A;  4A5W B;  2Y8T A;  3FGT A;  1H2Q P;  2I2L A;  3INB C;  2CG7 A;  1ZJK A;  3K3T A;  1OK3 A;  1OJW A;  1OK1 A;  4YNX A;  4B2S A;  1MD8 A;  1E5G A;  2LOJ A;  2XWB F;  2JGX A;  4MUC A;  1E8B A;  1H2P P;  1QGB A;  2XWJ I;  2RLQ A;  3OED C;  1UOT P;  5DN4 A;  3TVJ A;  1ELV A;  2XRB A;  1HCC A;  1OK2 A;  2V8E A;  4KKD A;  5HYP A;  2YBY A;  1RLH A;  1VVC A;  2IZ3 A;  4B2R A;  2ZYC A; 
#chains in the Genus database with same CATH homology
 3MQL A;  1GKN A;  2ERJ A;  4JHS A;  4LOS A;  1H04 P;  1U5M A;  4K12 A;  4PZ5 A;  4F4O C;  3NFP I;  1C1Z A;  4LOT A;  2RKZ A;  2RLP A;  1H03 P;  4CSY A;  3IX0 A;  4AYE A;  1GPZ A;  2B5I D;  4AYD A;  3KZJ A;  2JGW A;  3RJ3 D;  2A55 A;  2MCY A;  2BZM A;  2CG6 A;  5HZP B;  3OP8 A;  1SRZ A;  2RL0 A;  1QO6 A;  1GKG A;  2EHF A;  1OK9 A;  4AYI A;  2XRD A;  1GHQ B;  2KRI A;  3CAL A;  2W80 A;  3GOV A;  3ERB A;  3O8E B;  1TPN A;  3KXV A;  3GXE A;  3R62 A;  1CKL A;  2IZ4 A;  2EC3 A;  2QY0 A;  2RKY A;  2JRA A;  1OJY A;  2CKU A;  1PPQ A;  5HYT B;  5JPM G;  5FO8 C;  2MCZ A;  4FXG G;  1OJV A;  1SS2 A;  3T5O A;  3L89 M;  1HFH A;  5HYU B;  2W81 A;  2XQW C;  1HFI A;  2G7I A;  1Z92 B;  4J38 B;  1FBR A;  1Q3X A;  3EJH A;  4ONT D;  1LY2 A;  1VVD A;  1NWV A;  1TPM A;  1G4G A;  4WJG 2;  3OXU D;  3M7P A;  2UWN A;  2WII C;  3ZD2 A;  2KMS A;  3SW0 X;  4DJZ A;  1QUB A;  3ZRZ A;  3IU3 I;  4ZH1 D;  1O9A A;  4IGD A;  3ZD1 A;  1TPG A;  1MD7 A;  2YRA A;  4C16 A;  2O39 C;  4AYM A;  5I0Q B;  1E88 A;  1G4F A;  4A5W B;  1H2Q P;  3INB C;  2CG7 A;  1ZJK A;  1OK3 A;  1OJW A;  1OK1 A;  4YNX A;  4B2S A;  1MD8 A;  1E5G A;  2LOJ A;  2XWB F;  2JGX A;  4MUC A;  1E8B A;  1H2P P;  1QGB A;  2XWJ I;  2RLQ A;  3OED C;  1UOT P;  3TVJ A;  1ELV A;  2XRB A;  1HCC A;  1OK2 A;  2V8E A;  4KKD A;  5HYP A;  2YBY A;  1VVC A;  2IZ3 A;  4B2R A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2LOJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations