2O6YA

Tyrosine ammonia-lyase from rhodobacter sphaeroides
Total Genus 194

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (28-31)AH11 (300-328)S1 (10-13)TIV1 (13-16)AH8 (205-237)AH1 (19-27)AH5 (123-134)S2 (31-34)AH2 (36-55)TII1 (59-62)TI6 (337-340)3H2 (76-78)3H1 (67-69)TIV2 (60-63)TIV3 (61-64)TI1 (69-72)TVIII2 (70-73)AH3 (79-90)AH6 (153-164)TIV4 (146-152)S4 (138-139)O1 (90-92)S3 (94-97)S5 (142-144)TVIII4 (340-343)TI3 (193-196)3H3 (198-200)3H7 (432-434)AH7 (179-186)TI2 (171-174)TIV5 (200-203)TIV10 (434-437)TI5 (286-289)TII2 (268-271)TVIII3 (292-295)3H4 (242-244)AH9 (246-251)AH10 (255-268)AH16 (506-518)3H5 (279-281)TIV6 (271-274)AH12 (353-381)TIV7 (332-335)TI8 (382-385)AH14 (442-475)3H6 (391-393)TI'1 (386-389)TIV8 (397-400)TIV9 (398-401)TVIII5 (399-402)AH13 (404-420)TI10 (423-426)TI11 (424-427)TVIII6 (436-439)TI13 (476-479)AH15 (484-495)TIV12 (500-503)AH4 (100-115)S7 (176-177)TI4 (285-288)TI7 (348-351)TII3 (479-482)S6 (169-170)O2 (252-254)TIV11 (475-478)Updating...
connected with : NaN
molecule tags Lyase
source organism Rhodobacter sphaeroides
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
molecule keywords Putative histidine ammonia-lyase
total genus 194
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o6yA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o6yA02
4ADMA 1U15A 1TJWA 1C3UA 4BABA 4APAA 1GK2A 4CQ5A 1TJ7A 1FUOA 4C5UA 2E9FA 5HW2A 2PTRA 4C6GA 3QBPA 1J3UA 3R6YA 2O78A 1YFMA 2O7DA 2OHYA 2HVGA 4MX2A 4NLEA 1Q5NA 1I0AA 1Y2MA 1FURA 3OCEA 1W27A 2RJRA 4C5SA 3BHGA 3TV2A 1FUPA 3GTDA 1YISA 4C5RA 5EYVA 2O7FA 3NZ4A 3UNVA 2O7EA 1JSWA 1HY0A 4FLCA 3R6VA 4FFXA 2J91A 2FUSA 2QVEA 3OCFA 2RJSA 1T6PA 1TJUA 3KDYA 1C3CA 4EEIA 2O7BA 1DOFA 1GKJA 5F92A 4V2QA 1RE5A 2PTSA 2PFMA 1DCNA 1YFEA 2X75A 2PTQA 1EB4A 1AUWA 1HY1A 3GZHA 4HGVA 1U16A 3CZOA 1K7WA 1GK3A 3R6QA 1T6JA 1K62A 3NO9A 4NSLA 2NYFA 5D6BA 3E04A 1XWOA 3C8TA 1FUQA 5F91A 4EFCA 3RRPA 4BAAA 1KQ7A 1GKMA 3KDZA 4APBA 2O6YA 1TJVA 2YIIA 5EYTA 4V2RA 1VDKA 2VD6A 3RD8A 1B8FA 2QGAB 4ADLA 2NYNA
chains in the Genus database with same CATH superfamily
4ADMA 1U15A 1TJWA 1C3UA 5H8WA 4BABA 2VL7A 4APAA 1GK2A 4CQ5A 1TJ7A 1FUOA 4C5UA 2E9FA 5HW2A 2PTRA 1XMCA 2VSFA 4C6GA 3QBPA 1J3UA 3R6YA 2O78A 1YFMA 2O7DA 2FELA 2OHYA 2HVGA 4MX2A 4NLEA 1Q5NA 1I0AA 4A15A 1Y2MA 1XL7A 1FURA 1XL8A 3OCEA 1XMDA 1W27A 2RJRA 4C5SA 3BHGA 3TV2A 1FUPA 3GTDA 1YISA 4C5RA 4WNLA 2FENA 5EYVA 2O7FA 3NZ4A 3UNVA 2O7EA 1XLYA 1JSWA 1HY0A 4FLCA 3R6VA 4FFXA 2J91A 2FUSA 2QVEA 3OCFA 2RJSA 1T6PA 1TJUA 3KDYA 1C3CA 4EEIA 2O7BA 1DOFA 1GKJA 5F92A 4V2QA 1RE5A 2PTSA 2PFMA 1DCNA 1YFEA 2X75A 3CRW1 2PTQA 3CRVA 1EB4A 1AUWA 1HY1A 3GZHA 4HGVA 1U16A 3CZOA 1K7WA 1GK3A 3R6QA 1T6JA 1K62A 3NO9A 4NSLA 2NYFA 5D6BA 3E04A 1XWOA 3C8TA 1FUQA 5F91A 5M0JA 4EFCA 3RRPA 4BAAA 1KQ7A 1GKMA 3KDZA 4APBA 5M0IA 2O6YA 1TJVA 2YIIA 5EYTA 4V2RA 1VDKA 2VD6A 3RD8A 1B8FA 2QGAB 4ADLA 2NYNA
chains in the Genus database with same CATH topology
4ADMA 1U15A 1TJWA 1C3UA 4BABA 4APAA 1GK2A 4CQ5A 1TJ7A 1FUOA 4C5UA 2E9FA 5HW2A 2PTRA 4C6GA 3QBPA 1J3UA 3R6YA 2O78A 1YFMA 2O7DA 2OHYA 2HVGA 4MX2A 4NLEA 1Q5NA 1I0AA 1Y2MA 1FURA 3OCEA 1W27A 2RJRA 4C5SA 3BHGA 3TV2A 1FUPA 3GTDA 1YISA 4C5RA 5EYVA 2O7FA 3NZ4A 3UNVA 2O7EA 1JSWA 1HY0A 4FLCA 3R6VA 4FFXA 2J91A 2FUSA 2QVEA 3OCFA 2RJSA 1T6PA 1TJUA 3KDYA 1C3CA 4EEIA 2O7BA 1DOFA 1GKJA 5F92A 4V2QA 1RE5A 2PTSA 2PFMA 1DCNA 1YFEA 2X75A 2PTQA 1EB4A 1AUWA 1HY1A 3GZHA 4HGVA 1U16A 3CZOA 1K7WA 1GK3A 3R6QA 1T6JA 1K62A 3NO9A 4NSLA 2NYFA 5D6BA 3E04A 1XWOA 3C8TA 1FUQA 5F91A 4EFCA 3RRPA 4BAAA 1KQ7A 1GKMA 3KDZA 4APBA 2O6YA 1TJVA 2YIIA 5EYTA 4V2RA 1VDKA 2VD6A 3RD8A 1B8FA 2QGAB 4ADLA 2NYNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ADM A;  1U15 A;  1TJW A;  1C3U A;  4BAB A;  4APA A;  1GK2 A;  4CQ5 A;  1TJ7 A;  1FUO A;  4C5U A;  2E9F A;  5HW2 A;  2PTR A;  4C6G A;  3QBP A;  1J3U A;  3R6Y A;  2O78 A;  1YFM A;  2O7D A;  2OHY A;  2HVG A;  4MX2 A;  4NLE A;  1Q5N A;  1I0A A;  1Y2M A;  1FUR A;  3OCE A;  1W27 A;  2RJR A;  4C5S A;  3BHG A;  3TV2 A;  1FUP A;  3GTD A;  1YIS A;  4C5R A;  5EYV A;  2O7F A;  3NZ4 A;  3UNV A;  2O7E A;  1JSW A;  1HY0 A;  4FLC A;  3R6V A;  4FFX A;  2J91 A;  2FUS A;  2QVE A;  3OCF A;  2RJS A;  1T6P A;  1TJU A;  3KDY A;  1C3C A;  4EEI A;  2O7B A;  1DOF A;  1GKJ A;  5F92 A;  4V2Q A;  1RE5 A;  2PTS A;  2PFM A;  1DCN A;  1YFE A;  2X75 A;  2PTQ A;  1EB4 A;  1AUW A;  1HY1 A;  3GZH A;  4HGV A;  1U16 A;  3CZO A;  1K7W A;  1GK3 A;  3R6Q A;  1T6J A;  1K62 A;  3NO9 A;  4NSL A;  2NYF A;  5D6B A;  3E04 A;  1XWO A;  3C8T A;  1FUQ A;  5F91 A;  4EFC A;  3RRP A;  4BAA A;  1KQ7 A;  1GKM A;  3KDZ A;  4APB A;  2O6Y A;  1TJV A;  2YII A;  5EYT A;  4V2R A;  1VDK A;  2VD6 A;  3RD8 A;  1B8F A;  2QGA B;  4ADL A;  2NYN A; 
#chains in the Genus database with same CATH topology
 4ADM A;  1U15 A;  1TJW A;  1C3U A;  5H8W A;  4BAB A;  2VL7 A;  4APA A;  1GK2 A;  4CQ5 A;  1TJ7 A;  1FUO A;  4C5U A;  2E9F A;  5HW2 A;  2PTR A;  1XMC A;  2VSF A;  4C6G A;  3QBP A;  1J3U A;  3R6Y A;  2O78 A;  1YFM A;  2O7D A;  2FEL A;  2OHY A;  2HVG A;  4MX2 A;  4NLE A;  1Q5N A;  1I0A A;  4A15 A;  1Y2M A;  1XL7 A;  1FUR A;  1XL8 A;  3OCE A;  1XMD A;  1W27 A;  2RJR A;  4C5S A;  3BHG A;  3TV2 A;  1FUP A;  3GTD A;  1YIS A;  4C5R A;  4WNL A;  2FEN A;  5EYV A;  2O7F A;  3NZ4 A;  3UNV A;  2O7E A;  1XLY A;  1JSW A;  1HY0 A;  4FLC A;  3R6V A;  4FFX A;  2J91 A;  2FUS A;  2QVE A;  3OCF A;  2RJS A;  1T6P A;  1TJU A;  3KDY A;  1C3C A;  4EEI A;  2O7B A;  1DOF A;  1GKJ A;  5F92 A;  4V2Q A;  1RE5 A;  2PTS A;  2PFM A;  1DCN A;  1YFE A;  2X75 A;  3CRW 1;  2PTQ A;  3CRV A;  1EB4 A;  1AUW A;  1HY1 A;  3GZH A;  4HGV A;  1U16 A;  3CZO A;  1K7W A;  1GK3 A;  3R6Q A;  1T6J A;  1K62 A;  3NO9 A;  4NSL A;  2NYF A;  5D6B A;  3E04 A;  1XWO A;  3C8T A;  1FUQ A;  5F91 A;  5M0J A;  4EFC A;  3RRP A;  4BAA A;  1KQ7 A;  1GKM A;  3KDZ A;  4APB A;  5M0I A;  2O6Y A;  1TJV A;  2YII A;  5EYT A;  4V2R A;  1VDK A;  2VD6 A;  3RD8 A;  1B8F A;  2QGA B;  4ADL A;  2NYN A; 
#chains in the Genus database with same CATH homology
 4ADM A;  1U15 A;  1TJW A;  1C3U A;  4BAB A;  4APA A;  1GK2 A;  4CQ5 A;  1TJ7 A;  1FUO A;  4C5U A;  2E9F A;  5HW2 A;  2PTR A;  4C6G A;  3QBP A;  1J3U A;  3R6Y A;  2O78 A;  1YFM A;  2O7D A;  2OHY A;  2HVG A;  4MX2 A;  4NLE A;  1Q5N A;  1I0A A;  1Y2M A;  1FUR A;  3OCE A;  1W27 A;  2RJR A;  4C5S A;  3BHG A;  3TV2 A;  1FUP A;  3GTD A;  1YIS A;  4C5R A;  5EYV A;  2O7F A;  3NZ4 A;  3UNV A;  2O7E A;  1JSW A;  1HY0 A;  4FLC A;  3R6V A;  4FFX A;  2J91 A;  2FUS A;  2QVE A;  3OCF A;  2RJS A;  1T6P A;  1TJU A;  3KDY A;  1C3C A;  4EEI A;  2O7B A;  1DOF A;  1GKJ A;  5F92 A;  4V2Q A;  1RE5 A;  2PTS A;  2PFM A;  1DCN A;  1YFE A;  2X75 A;  2PTQ A;  1EB4 A;  1AUW A;  1HY1 A;  3GZH A;  4HGV A;  1U16 A;  3CZO A;  1K7W A;  1GK3 A;  3R6Q A;  1T6J A;  1K62 A;  3NO9 A;  4NSL A;  2NYF A;  5D6B A;  3E04 A;  1XWO A;  3C8T A;  1FUQ A;  5F91 A;  4EFC A;  3RRP A;  4BAA A;  1KQ7 A;  1GKM A;  3KDZ A;  4APB A;  2O6Y A;  1TJV A;  2YII A;  5EYT A;  4V2R A;  1VDK A;  2VD6 A;  3RD8 A;  1B8F A;  2QGA B;  4ADL A;  2NYN A; 
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