The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
194
|
sequence length |
515
|
structure length |
514
|
Chain Sequence |
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHHLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb |
| molecule keywords |
Putative histidine ammonia-lyase
|
| molecule tags |
Lyase
|
| source organism |
Rhodobacter sphaeroides
|
| total genus |
194
|
| structure length |
514
|
| sequence length |
515
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
4.3.1.23: Tyrosine ammonia-lyase. |
| pdb deposition date | 2006-12-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00221 | Lyase_aromatic | Aromatic amino acid lyase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Fumarase C; Chain B, domain 1 | Fumarase/aspartase (N-terminal domain) | ||
| Mainly Alpha | Up-down Bundle | Fumarase C; Chain A, domain 2 | Fumarase/aspartase (Central domain) |
#chains in the Genus database with same CATH superfamily 5EYV A; 2NYN A; 5F91 A; 2E9F A; 3R6Q A; 2FUS A; 1FUQ A; 1VDK A; 2YII A; 3NZ4 A; 4FFX A; 2PTQ A; 4ADM A; 1U15 A; 1GK2 A; 1GKJ A; 3OCE A; 4MX2 A; 3E04 A; 1T6J A; 4BAB A; 4C5R A; 5F92 A; 1C3U A; 1I0A A; 3RD8 A; 3UNV A; 1TJW A; 1TJV A; 3RRP A; 2O7B A; 1GK3 A; 2O7D A; 3CZO A; 1FUP A; 3KDZ A; 1Q5N A; 1YFE A; 1J3U A; 5EYT A; 4V2R A; 4C5U A; 1FUO A; 3GTD A; 3C8T A; 4NLE A; 3TV2 A; 3QBP A; 4NSL A; 1C3C A; 1HY1 A; 1B8F A; 1HY0 A; 2VD6 A; 2RJR A; 1EB4 A; 1DOF A; 4C6G A; 1DCN A; 2O6Y A; 2QVE A; 2HVG A; 3KDY A; 4APA A; 2OHY A; 2RJS A; 4HGV A; 1KQ7 A; 2J91 A; 2NYF A; 3GZH A; 4EEI A; 4ADL A; 1Y2M A; 4C5S A; 3R6Y A; 2X75 A; 2O78 A; 1TJ7 A; 3NO9 A; 5HW2 A; 2QGA B; 3BHG A; 4V2Q A; 3R6V A; 1RE5 A; 1W27 A; 2PTR A; 1YFM A; 4BAA A; 2O7E A; 2PFM A; 1GKM A; 1FUR A; 4APB A; 1K7W A; 1TJU A; 4CQ5 A; 3OCF A; 5D6B A; 1YIS A; 4EFC A; 1K62 A; 1U16 A; 2O7F A; 4FLC A; 2PTS A; 1XWO A; 1T6P A; 1AUW A; 1JSW A; #chains in the Genus database with same CATH topology 5EYV A; 2NYN A; 5F91 A; 2E9F A; 3R6Q A; 2FUS A; 1FUQ A; 1VDK A; 2YII A; 3NZ4 A; 4FFX A; 2PTQ A; 4ADM A; 1U15 A; 1GK2 A; 1XMD A; 1GKJ A; 3OCE A; 4MX2 A; 3E04 A; 1T6J A; 4BAB A; 1XMC A; 4C5R A; 5F92 A; 1C3U A; 1I0A A; 3RD8 A; 1XL8 A; 3UNV A; 1TJW A; 1TJV A; 3RRP A; 2O7B A; 1GK3 A; 2O7D A; 5H8W A; 3CZO A; 1FUP A; 3CRW 1; 5M0I A; 3KDZ A; 1Q5N A; 1YFE A; 1J3U A; 5EYT A; 2FEL A; 4V2R A; 4C5U A; 1FUO A; 3GTD A; 3C8T A; 4NLE A; 5M0J A; 3TV2 A; 3QBP A; 4NSL A; 1C3C A; 1HY1 A; 1B8F A; 1XLY A; 1HY0 A; 2VD6 A; 2RJR A; 1EB4 A; 1DOF A; 4C6G A; 1DCN A; 2O6Y A; 2QVE A; 2HVG A; 3KDY A; 4APA A; 2OHY A; 2RJS A; 4HGV A; 1KQ7 A; 2J91 A; 2NYF A; 4A15 A; 3GZH A; 4EEI A; 4ADL A; 1Y2M A; 4C5S A; 3R6Y A; 2X75 A; 2O78 A; 2VSF A; 1TJ7 A; 3NO9 A; 5HW2 A; 2QGA B; 3BHG A; 4V2Q A; 3CRV A; 1RE5 A; 1W27 A; 3R6V A; 4WNL A; 2PTR A; 1YFM A; 4BAA A; 2O7E A; 2VL7 A; 2PFM A; 1GKM A; 1FUR A; 1XL7 A; 4APB A; 2FEN A; 1K7W A; 1TJU A; 4CQ5 A; 3OCF A; 5D6B A; 1YIS A; 4EFC A; 1K62 A; 1U16 A; 2O7F A; 4FLC A; 2PTS A; 1XWO A; 1T6P A; 1AUW A; 1JSW A; #chains in the Genus database with same CATH homology 5EYV A; 2NYN A; 5F91 A; 2E9F A; 3R6Q A; 2FUS A; 1FUQ A; 1VDK A; 2YII A; 3NZ4 A; 4FFX A; 2PTQ A; 4ADM A; 1U15 A; 1GK2 A; 1GKJ A; 3OCE A; 4MX2 A; 3E04 A; 1T6J A; 4BAB A; 4C5R A; 5F92 A; 1C3U A; 1I0A A; 3RD8 A; 3UNV A; 1TJW A; 1TJV A; 3RRP A; 2O7B A; 1GK3 A; 2O7D A; 3CZO A; 1FUP A; 3KDZ A; 1Q5N A; 1YFE A; 1J3U A; 5EYT A; 4V2R A; 4C5U A; 1FUO A; 3GTD A; 3C8T A; 4NLE A; 3TV2 A; 3QBP A; 4NSL A; 1C3C A; 1HY1 A; 1B8F A; 1HY0 A; 2VD6 A; 2RJR A; 1EB4 A; 1DOF A; 4C6G A; 1DCN A; 2O6Y A; 2QVE A; 2HVG A; 3KDY A; 4APA A; 2OHY A; 2RJS A; 4HGV A; 1KQ7 A; 2J91 A; 2NYF A; 3GZH A; 4EEI A; 4ADL A; 1Y2M A; 4C5S A; 3R6Y A; 2X75 A; 2O78 A; 1TJ7 A; 3NO9 A; 5HW2 A; 2QGA B; 3BHG A; 4V2Q A; 3R6V A; 1RE5 A; 1W27 A; 2PTR A; 1YFM A; 4BAA A; 2O7E A; 2PFM A; 1GKM A; 1FUR A; 4APB A; 1K7W A; 1TJU A; 4CQ5 A; 3OCF A; 5D6B A; 1YIS A; 4EFC A; 1K62 A; 1U16 A; 2O7F A; 4FLC A; 2PTS A; 1XWO A; 1T6P A; 1AUW A; 1JSW A;
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