2O78A

Tyrosine ammonia-lyase from rhodobacter sphaeroides (his89phe variant) complexed with cinnamic acid
Total Genus 194

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHFLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (28-31)AH11 (300-328)S1 (10-13)AH1 (19-27)AH5 (123-134)S2 (31-34)AH2 (36-55)TIV3 (117-120)TII1 (59-62)TI4 (337-340)3H2 (76-78)3H1 (67-69)TIV1 (60-63)TIV2 (61-64)TI1 (69-72)TVIII2 (70-73)AH3 (79-90)AH6 (153-164)TIV4 (146-152)S4 (138-139)O1 (90-92)S3 (94-97)S5 (142-144)TVIII3 (340-343)TI3 (193-196)3H3 (198-200)3H8 (432-434)AH7 (179-186)TI2 (171-174)TIV5 (200-203)AH8 (205-237)TIV11 (434-437)AH12 (353-381)3H6 (286-288)TII2 (268-271)3H4 (242-244)AH9 (246-251)AH10 (255-268)AH16 (506-518)TIV6 (271-274)3H5 (279-281)TIV7 (332-335)TI6 (382-385)AH14 (442-475)3H7 (391-393)TI'1 (386-389)TIV8 (397-400)TIV9 (398-401)TVIII4 (399-402)AH13 (404-420)TIV10 (423-426)TI8 (424-427)TVIII5 (436-439)TI10 (476-479)AH15 (484-495)TVIII6 (500-503)AH4 (100-115)S7 (176-177)TI5 (348-351)TII3 (479-482)S6 (169-170)O2 (252-254)TIV12 (475-478)Updating...
connected with : NaN
molecule tags Lyase
source organism Rhodobacter sphaeroides
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
molecule keywords Putative histidine ammonia-lyase
total genus 194
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o78A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o78A02
3R6VA 1FUOA 1C3UA 1GKMA 3OCEA 3C8TA 1YISA 5F92A 4HGVA 1DCNA 3KDZA 4C5SA 2O6YA 3R6YA 5D6BA 4BAAA 1FUPA 2RJRA 2PTSA 2QVEA 1K7WA 4ADMA 3NZ4A 1B8FA 4NLEA 4C5RA 4BABA 2O7DA 5HW2A 4FFXA 1T6JA 5EYTA 2E9FA 1FURA 4EEIA 2O78A 4V2RA 1YFEA 5F91A 1I0AA 1RE5A 1J3UA 1W27A 3UNVA 1C3CA 3RRPA 2VD6A 3NO9A 2FUSA 2HVGA 2NYFA 2J91A 4APAA 1TJVA 3GTDA 3OCFA 4APBA 1GKJA 2O7FA 1U16A 1U15A 3BHGA 2O7EA 1XWOA 3R6QA 3QBPA 2NYNA 1GK3A 3GZHA 2RJSA 1DOFA 4C5UA 4MX2A 1TJUA 1AUWA 1VDKA 5EYVA 2PTRA 2PTQA 3CZOA 1HY1A 1JSWA 4EFCA 1FUQA 1YFMA 4C6GA 2PFMA 4FLCA 3E04A 1KQ7A 3TV2A 2QGAB 1HY0A 4V2QA 1Y2MA 4CQ5A 1T6PA 2OHYA 2O7BA 1TJWA 1TJ7A 1GK2A 1Q5NA 3KDYA 3RD8A 1K62A 4NSLA 1EB4A 2X75A 4ADLA 2YIIA
chains in the Genus database with same CATH superfamily
3R6VA 1FUOA 1C3UA 1GKMA 3OCEA 3C8TA 1YISA 5F92A 4HGVA 1DCNA 3KDZA 4C5SA 2O6YA 3R6YA 5D6BA 1XMDA 4BAAA 1FUPA 2RJRA 2PTSA 2QVEA 1K7WA 4ADMA 3NZ4A 1B8FA 4NLEA 4C5RA 4BABA 2O7DA 5HW2A 4FFXA 1T6JA 5EYTA 2E9FA 1FURA 2FENA 4EEIA 2O78A 4V2RA 1YFEA 5F91A 1I0AA 2VL7A 1RE5A 1J3UA 1W27A 3CRW1 3UNVA 1C3CA 2VSFA 3RRPA 2VD6A 3NO9A 2FELA 2FUSA 2HVGA 2NYFA 2J91A 4APAA 1TJVA 3CRVA 3GTDA 3OCFA 4APBA 1GKJA 5H8WA 2O7FA 1U16A 1U15A 3BHGA 5M0JA 2O7EA 1XWOA 1XL8A 4WNLA 3R6QA 3QBPA 2NYNA 1GK3A 3GZHA 2RJSA 1DOFA 4C5UA 4MX2A 5M0IA 1TJUA 1XLYA 1AUWA 1VDKA 5EYVA 2PTRA 2PTQA 3CZOA 1HY1A 1JSWA 4EFCA 4A15A 1FUQA 1YFMA 4C6GA 2PFMA 1XMCA 4FLCA 3E04A 1KQ7A 3TV2A 2QGAB 1HY0A 4V2QA 1Y2MA 4CQ5A 1T6PA 2OHYA 1XL7A 2O7BA 1TJWA 1TJ7A 1GK2A 1Q5NA 3KDYA 3RD8A 1K62A 4NSLA 1EB4A 2X75A 4ADLA 2YIIA
chains in the Genus database with same CATH topology
3R6VA 1FUOA 1C3UA 1GKMA 3OCEA 3C8TA 1YISA 5F92A 4HGVA 1DCNA 3KDZA 4C5SA 2O6YA 3R6YA 5D6BA 4BAAA 1FUPA 2RJRA 2PTSA 2QVEA 1K7WA 4ADMA 3NZ4A 1B8FA 4NLEA 4C5RA 4BABA 2O7DA 5HW2A 4FFXA 1T6JA 5EYTA 2E9FA 1FURA 4EEIA 2O78A 4V2RA 1YFEA 5F91A 1I0AA 1RE5A 1J3UA 1W27A 3UNVA 1C3CA 3RRPA 2VD6A 3NO9A 2FUSA 2HVGA 2NYFA 2J91A 4APAA 1TJVA 3GTDA 3OCFA 4APBA 1GKJA 2O7FA 1U16A 1U15A 3BHGA 2O7EA 1XWOA 3R6QA 3QBPA 2NYNA 1GK3A 3GZHA 2RJSA 1DOFA 4C5UA 4MX2A 1TJUA 1AUWA 1VDKA 5EYVA 2PTRA 2PTQA 3CZOA 1HY1A 1JSWA 4EFCA 1FUQA 1YFMA 4C6GA 2PFMA 4FLCA 3E04A 1KQ7A 3TV2A 2QGAB 1HY0A 4V2QA 1Y2MA 4CQ5A 1T6PA 2OHYA 2O7BA 1TJWA 1TJ7A 1GK2A 1Q5NA 3KDYA 3RD8A 1K62A 4NSLA 1EB4A 2X75A 4ADLA 2YIIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R6V A;  1FUO A;  1C3U A;  1GKM A;  3OCE A;  3C8T A;  1YIS A;  5F92 A;  4HGV A;  1DCN A;  3KDZ A;  4C5S A;  2O6Y A;  3R6Y A;  5D6B A;  4BAA A;  1FUP A;  2RJR A;  2PTS A;  2QVE A;  1K7W A;  4ADM A;  3NZ4 A;  1B8F A;  4NLE A;  4C5R A;  4BAB A;  2O7D A;  5HW2 A;  4FFX A;  1T6J A;  5EYT A;  2E9F A;  1FUR A;  4EEI A;  2O78 A;  4V2R A;  1YFE A;  5F91 A;  1I0A A;  1RE5 A;  1J3U A;  1W27 A;  3UNV A;  1C3C A;  3RRP A;  2VD6 A;  3NO9 A;  2FUS A;  2HVG A;  2NYF A;  2J91 A;  4APA A;  1TJV A;  3GTD A;  3OCF A;  4APB A;  1GKJ A;  2O7F A;  1U16 A;  1U15 A;  3BHG A;  2O7E A;  1XWO A;  3R6Q A;  3QBP A;  2NYN A;  1GK3 A;  3GZH A;  2RJS A;  1DOF A;  4C5U A;  4MX2 A;  1TJU A;  1AUW A;  1VDK A;  5EYV A;  2PTR A;  2PTQ A;  3CZO A;  1HY1 A;  1JSW A;  4EFC A;  1FUQ A;  1YFM A;  4C6G A;  2PFM A;  4FLC A;  3E04 A;  1KQ7 A;  3TV2 A;  2QGA B;  1HY0 A;  4V2Q A;  1Y2M A;  4CQ5 A;  1T6P A;  2OHY A;  2O7B A;  1TJW A;  1TJ7 A;  1GK2 A;  1Q5N A;  3KDY A;  3RD8 A;  1K62 A;  4NSL A;  1EB4 A;  2X75 A;  4ADL A;  2YII A; 
#chains in the Genus database with same CATH topology
 3R6V A;  1FUO A;  1C3U A;  1GKM A;  3OCE A;  3C8T A;  1YIS A;  5F92 A;  4HGV A;  1DCN A;  3KDZ A;  4C5S A;  2O6Y A;  3R6Y A;  5D6B A;  1XMD A;  4BAA A;  1FUP A;  2RJR A;  2PTS A;  2QVE A;  1K7W A;  4ADM A;  3NZ4 A;  1B8F A;  4NLE A;  4C5R A;  4BAB A;  2O7D A;  5HW2 A;  4FFX A;  1T6J A;  5EYT A;  2E9F A;  1FUR A;  2FEN A;  4EEI A;  2O78 A;  4V2R A;  1YFE A;  5F91 A;  1I0A A;  2VL7 A;  1RE5 A;  1J3U A;  1W27 A;  3CRW 1;  3UNV A;  1C3C A;  2VSF A;  3RRP A;  2VD6 A;  3NO9 A;  2FEL A;  2FUS A;  2HVG A;  2NYF A;  2J91 A;  4APA A;  1TJV A;  3CRV A;  3GTD A;  3OCF A;  4APB A;  1GKJ A;  5H8W A;  2O7F A;  1U16 A;  1U15 A;  3BHG A;  5M0J A;  2O7E A;  1XWO A;  1XL8 A;  4WNL A;  3R6Q A;  3QBP A;  2NYN A;  1GK3 A;  3GZH A;  2RJS A;  1DOF A;  4C5U A;  4MX2 A;  5M0I A;  1TJU A;  1XLY A;  1AUW A;  1VDK A;  5EYV A;  2PTR A;  2PTQ A;  3CZO A;  1HY1 A;  1JSW A;  4EFC A;  4A15 A;  1FUQ A;  1YFM A;  4C6G A;  2PFM A;  1XMC A;  4FLC A;  3E04 A;  1KQ7 A;  3TV2 A;  2QGA B;  1HY0 A;  4V2Q A;  1Y2M A;  4CQ5 A;  1T6P A;  2OHY A;  1XL7 A;  2O7B A;  1TJW A;  1TJ7 A;  1GK2 A;  1Q5N A;  3KDY A;  3RD8 A;  1K62 A;  4NSL A;  1EB4 A;  2X75 A;  4ADL A;  2YII A; 
#chains in the Genus database with same CATH homology
 3R6V A;  1FUO A;  1C3U A;  1GKM A;  3OCE A;  3C8T A;  1YIS A;  5F92 A;  4HGV A;  1DCN A;  3KDZ A;  4C5S A;  2O6Y A;  3R6Y A;  5D6B A;  4BAA A;  1FUP A;  2RJR A;  2PTS A;  2QVE A;  1K7W A;  4ADM A;  3NZ4 A;  1B8F A;  4NLE A;  4C5R A;  4BAB A;  2O7D A;  5HW2 A;  4FFX A;  1T6J A;  5EYT A;  2E9F A;  1FUR A;  4EEI A;  2O78 A;  4V2R A;  1YFE A;  5F91 A;  1I0A A;  1RE5 A;  1J3U A;  1W27 A;  3UNV A;  1C3C A;  3RRP A;  2VD6 A;  3NO9 A;  2FUS A;  2HVG A;  2NYF A;  2J91 A;  4APA A;  1TJV A;  3GTD A;  3OCF A;  4APB A;  1GKJ A;  2O7F A;  1U16 A;  1U15 A;  3BHG A;  2O7E A;  1XWO A;  3R6Q A;  3QBP A;  2NYN A;  1GK3 A;  3GZH A;  2RJS A;  1DOF A;  4C5U A;  4MX2 A;  1TJU A;  1AUW A;  1VDK A;  5EYV A;  2PTR A;  2PTQ A;  3CZO A;  1HY1 A;  1JSW A;  4EFC A;  1FUQ A;  1YFM A;  4C6G A;  2PFM A;  4FLC A;  3E04 A;  1KQ7 A;  3TV2 A;  2QGA B;  1HY0 A;  4V2Q A;  1Y2M A;  4CQ5 A;  1T6P A;  2OHY A;  2O7B A;  1TJW A;  1TJ7 A;  1GK2 A;  1Q5N A;  3KDY A;  3RD8 A;  1K62 A;  4NSL A;  1EB4 A;  2X75 A;  4ADL A;  2YII A; 
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