2O7FA

Tyrosine ammonia-lyase from rhodobacter sphaeroides (his89phe variant), complexed with coumaric acid
Total Genus 194

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
194
sequence length
515
structure length
514
Chain Sequence
PKPAVELDRHIDLDQAHAVASGGARIVLAPPARDRCRASEARLGAVIREARHVYGLTTGFGPLANRLISGENVRTLQANLVHFLASGVGPVLDWTTARAMVLARLVSIAQGASGASEGTIARLIDLLNSELAPAVPSRGTVGDLTPLAHMVLCLQGRGDFLDRDGTRLDGAEGLRRGRLQPLDLSHRDALALVNGTSAMTGIALVNAHACRHLGNWAVALTALLAECLRGRTEAWAAALSDLRPHPGQKDAAARLRARVDGSARVVRHVIAERRLDAGDIGTEPEAGQDAYSLRCAPQVLGAGFDTLAWHDRVLTIELNAVTDNPVFPPDGSVPALHGGNFMGQHVALTSDALATAVTVLAGLAERQIARLTDERLNRGLPPFLHRGPAGLNSGFMGAQVTATALLAEMRATGPASIHSISTNAANQDVVSLGTIAARLCREKIDRWAEILAILALCLAQAAELRCGSGLDGVSPAGKKLVQALREQFPPLETDRPLGQEIAALATHLLQQSPV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII1 (28-31)AH11 (300-328)S1 (10-13)TIV1 (13-16)AH8 (205-237)AH1 (19-27)AH5 (123-134)S2 (31-34)AH2 (36-55)TIV4 (117-120)TII1 (59-62)TI6 (337-340)3H2 (76-78)3H1 (67-69)TIV2 (60-63)TIV3 (61-64)TI1 (69-72)TVIII2 (70-73)AH3 (79-90)AH6 (153-164)TIV5 (146-152)S4 (138-139)O1 (90-92)S3 (94-97)S5 (142-144)TVIII4 (340-343)TI3 (193-196)3H3 (198-200)3H7 (432-434)AH7 (179-186)TI2 (171-174)TIV6 (200-203)TIV13 (434-437)AH12 (353-381)TI5 (286-289)TII2 (268-271)TVIII3 (292-295)3H4 (242-244)AH9 (246-251)AH10 (255-268)AH16 (506-518)3H5 (279-281)TIV7 (271-274)TIV8 (332-335)TI8 (382-385)AH14 (442-475)3H6 (391-393)TI'1 (386-389)TIV10 (397-400)TIV11 (398-401)TVIII5 (399-402)AH13 (404-420)TIV12 (423-426)TI10 (424-427)TVIII6 (436-439)TI12 (476-479)AH15 (484-495)TVIII7 (500-503)AH4 (100-115)S7 (176-177)TI4 (285-288)TI7 (348-351)TII3 (479-482)S6 (169-170)O2 (252-254)TIV14 (475-478)Updating...
connected with : NaN
molecule tags Lyase
source organism Rhodobacter sphaeroides
publication title Structural determinants and modulation of substrate specificity in phenylalanine-tyrosine ammonia-lyases.
pubmed doi rcsb
molecule keywords Putative histidine ammonia-lyase
total genus 194
structure length 514
sequence length 515
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 4.3.1.23: Tyrosine ammonia-lyase.
pdb deposition date 2006-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 2o7fA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 2o7fA02
1K62A 3NO9A 4FLCA 2O7EA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 2OHYA 1GKJA 1EB4A 3BHGA 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5EYTA 1Q5NA 5HW2A 2O78A 1TJVA 4MX2A 4FFXA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 1YFMA 2FUSA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 1T6PA 4EFCA 1YFEA 2PTQA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH superfamily
1K62A 3NO9A 4FLCA 2O7EA 5M0JA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 1XL8A 2OHYA 1GKJA 1EB4A 3BHGA 1XL7A 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 5H8WA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5EYTA 1Q5NA 5HW2A 1XLYA 2O78A 1TJVA 4A15A 4MX2A 4FFXA 4WNLA 2VSFA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 2FELA 1YFMA 2VL7A 2FUSA 1XMCA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 1T6PA 4EFCA 1YFEA 2PTQA 5M0IA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 2FENA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 3CRVA 1XMDA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 3CRW1 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH topology
1K62A 3NO9A 4FLCA 2O7EA 5F92A 3R6YA 2RJRA 1KQ7A 4V2RA 2OHYA 1GKJA 1EB4A 3BHGA 1W27A 2NYNA 3OCEA 1Y2MA 1HY0A 1GK2A 3R6VA 1DOFA 3KDYA 3NZ4A 2J91A 3KDZA 5F91A 4CQ5A 3UNVA 4C5SA 1XWOA 2O6YA 3C8TA 4APBA 3RRPA 4HGVA 2VD6A 1FUQA 1T6JA 1U15A 3GTDA 1K7WA 3CZOA 1JSWA 5EYVA 1TJWA 2QVEA 3TV2A 1YISA 2HVGA 4C6GA 4NSLA 5EYTA 1Q5NA 5HW2A 2O78A 1TJVA 4MX2A 4FFXA 4C5RA 2PFMA 4NLEA 2O7BA 1RE5A 2QGAB 1YFMA 2FUSA 2O7FA 3QBPA 2X75A 2O7DA 3GZHA 1AUWA 2RJSA 4C5UA 4EEIA 1VDKA 3E04A 2NYFA 3R6QA 1DCNA 1FURA 1T6PA 4EFCA 1YFEA 2PTQA 1TJUA 2YIIA 2PTRA 1I0AA 1C3CA 1TJ7A 1B8FA 3OCFA 3RD8A 5D6BA 4APAA 1FUOA 1FUPA 1HY1A 1U16A 4BABA 4ADLA 1GK3A 4V2QA 4ADMA 1J3UA 2PTSA 1C3UA 2E9FA 1GKMA 4BAAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5EYT A;  1Q5N A;  5HW2 A;  2O78 A;  1TJV A;  4MX2 A;  4FFX A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  1YFM A;  2FUS A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  1T6P A;  4EFC A;  1YFE A;  2PTQ A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  2E9F A;  1GKM A;  4BAA A; 
#chains in the Genus database with same CATH topology
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5M0J A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  1XL8 A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1XL7 A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  5H8W A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5EYT A;  1Q5N A;  5HW2 A;  1XLY A;  2O78 A;  1TJV A;  4A15 A;  4MX2 A;  4FFX A;  4WNL A;  2VSF A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  2FEL A;  1YFM A;  2VL7 A;  2FUS A;  1XMC A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  1T6P A;  4EFC A;  1YFE A;  2PTQ A;  5M0I A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  2FEN A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  3CRV A;  1XMD A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  3CRW 1;  2E9F A;  1GKM A;  4BAA A; 
#chains in the Genus database with same CATH homology
 1K62 A;  3NO9 A;  4FLC A;  2O7E A;  5F92 A;  3R6Y A;  2RJR A;  1KQ7 A;  4V2R A;  2OHY A;  1GKJ A;  1EB4 A;  3BHG A;  1W27 A;  2NYN A;  3OCE A;  1Y2M A;  1HY0 A;  1GK2 A;  3R6V A;  1DOF A;  3KDY A;  3NZ4 A;  2J91 A;  3KDZ A;  5F91 A;  4CQ5 A;  3UNV A;  4C5S A;  1XWO A;  2O6Y A;  3C8T A;  4APB A;  3RRP A;  4HGV A;  2VD6 A;  1FUQ A;  1T6J A;  1U15 A;  3GTD A;  1K7W A;  3CZO A;  1JSW A;  5EYV A;  1TJW A;  2QVE A;  3TV2 A;  1YIS A;  2HVG A;  4C6G A;  4NSL A;  5EYT A;  1Q5N A;  5HW2 A;  2O78 A;  1TJV A;  4MX2 A;  4FFX A;  4C5R A;  2PFM A;  4NLE A;  2O7B A;  1RE5 A;  2QGA B;  1YFM A;  2FUS A;  2O7F A;  3QBP A;  2X75 A;  2O7D A;  3GZH A;  1AUW A;  2RJS A;  4C5U A;  4EEI A;  1VDK A;  3E04 A;  2NYF A;  3R6Q A;  1DCN A;  1FUR A;  1T6P A;  4EFC A;  1YFE A;  2PTQ A;  1TJU A;  2YII A;  2PTR A;  1I0A A;  1C3C A;  1TJ7 A;  1B8F A;  3OCF A;  3RD8 A;  5D6B A;  4APA A;  1FUO A;  1FUP A;  1HY1 A;  1U16 A;  4BAB A;  4ADL A;  1GK3 A;  4V2Q A;  4ADM A;  1J3U A;  2PTS A;  1C3U A;  2E9F A;  1GKM A;  4BAA A; 
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