3CZOA

Crystal structure of double mutant phenylalanine ammonia-lyase from anabaena variabilis
Total Genus 189

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
537
structure length
536
Chain Sequence
NVIIGNQKLTINDVARVARNGTLVSLTNNTDILQGIQASCDYINNAVESGEPIYGVTSGFGGMANVAISREQASELQTNLVWFLKTGAGNKLPLADVRAAMLLRANSHMRGASGIRLELIKRMEIFLNAGVTPYVYEFGSIGDLVPLSYITGSLIGLDPSFKVDFNGKEMDAPTALRQLNLSPLTLLPKEGLAMMNGTSVMTGIAANCVYDTQILTAIAMGVHALDIQALNGTNQSFHPFIHNSKPHPGQLWAADQMISLLANSQLVRDELDGKHDYRDHELIQDRYSLRCLPQYLGPIVDGISQIAKQIEIEINSVTDNPLIDVDNQASYHGGNFLGQYVGMGMDHLRYYIGLLAKHLDVQIALLASPEFSNGLPPSLLGNRERKVNMGLKGLQICGNSIMPLLTFYGNSIADRFPTHAEQFNQNINSQGYTSATLARRSVDIFQNYVAIALMFGVQAVDLRTYKKTGHYDARASLSPATERLYSAVRHVVGQKPTSDRPYIWNDNEQGLDEHIARISADIAAGGVIVQAVQDIL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Lyase
source organism Anabaena variabilis
publication title Structural and biochemical characterization of the therapeutic Anabaena variabilis phenylalanine ammonia lyase.
pubmed doi rcsb
molecule keywords Histidine ammonia-lyase
total genus 189
structure length 536
sequence length 537
chains with identical sequence B, C, D
ec nomenclature ec 4.3.1.24: Phenylalanine ammonia-lyase.
pdb deposition date 2008-04-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 3czoA01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 3czoA02
3NO9A 1GK2A 2NYNA 4FFXA 3GZHA 1XWOA 1AUWA 1FUOA 4FLCA 2O7FA 4APBA 1GKJA 4BAAA 1T6JA 1FUQA 2O7BA 2PTQA 2QGAB 1W27A 4CQ5A 3R6VA 1FURA 1TJWA 3BHGA 1FUPA 1I0AA 3KDZA 3CZOA 2O6YA 3RRPA 1U15A 5F91A 4ADLA 1KQ7A 3RD8A 1GK3A 1U16A 3NZ4A 1YFMA 2J91A 1TJUA 1YISA 3OCEA 4V2RA 4HGVA 2O7DA 4C6GA 4NSLA 4C5SA 4EFCA 2OHYA 3R6QA 3E04A 1YFEA 1DOFA 1Q5NA 2VD6A 4V2QA 1TJVA 1K7WA 3KDYA 3TV2A 4C5RA 3C8TA 3QBPA 5HW2A 2QVEA 1RE5A 2RJSA 2PTSA 1HY0A 2NYFA 1DCNA 2PFMA 1K62A 2O78A 3R6YA 1Y2MA 2HVGA 4ADMA 2E9FA 1J3UA 1HY1A 1EB4A 5EYTA 5EYVA 1TJ7A 1B8FA 2O7EA 4APAA 3GTDA 2YIIA 1T6PA 4MX2A 4EEIA 1GKMA 4C5UA 2PTRA 4BABA 1C3CA 1JSWA 5D6BA 1C3UA 2FUSA 3OCFA 1VDKA 4NLEA 3UNVA 2RJRA 2X75A 5F92A
chains in the Genus database with same CATH superfamily
3NO9A 1GK2A 2NYNA 4FFXA 3GZHA 2FELA 1XWOA 1AUWA 1FUOA 4FLCA 3CRVA 2O7FA 4APBA 1GKJA 2VSFA 4BAAA 1T6JA 1FUQA 2O7BA 2PTQA 2QGAB 1W27A 4CQ5A 3R6VA 1FURA 1TJWA 3BHGA 1FUPA 1I0AA 3KDZA 3CZOA 2O6YA 3RRPA 1U15A 5F91A 4ADLA 2FENA 1KQ7A 1XL7A 3RD8A 1GK3A 1U16A 3NZ4A 1YFMA 2J91A 1XLYA 1TJUA 1YISA 3OCEA 4V2RA 2VL7A 4HGVA 2O7DA 4C6GA 1XMCA 3CRW1 4NSLA 4C5SA 4EFCA 2OHYA 3R6QA 3E04A 1YFEA 1DOFA 1Q5NA 2VD6A 4V2QA 1TJVA 1K7WA 3KDYA 3TV2A 4C5RA 3C8TA 3QBPA 5HW2A 2QVEA 1RE5A 4WNLA 2RJSA 2PTSA 1HY0A 1XL8A 2NYFA 5H8WA 1DCNA 2PFMA 4A15A 1K62A 2O78A 3R6YA 1Y2MA 2HVGA 4ADMA 2E9FA 1J3UA 1HY1A 1EB4A 5EYTA 5EYVA 1TJ7A 1XMDA 1B8FA 2O7EA 4APAA 3GTDA 2YIIA 1T6PA 4MX2A 5M0IA 4EEIA 1GKMA 4C5UA 2PTRA 4BABA 1C3CA 5M0JA 1JSWA 5D6BA 1C3UA 2FUSA 3OCFA 1VDKA 4NLEA 3UNVA 2RJRA 2X75A 5F92A
chains in the Genus database with same CATH topology
3NO9A 1GK2A 2NYNA 4FFXA 3GZHA 1XWOA 1AUWA 1FUOA 4FLCA 2O7FA 4APBA 1GKJA 4BAAA 1T6JA 1FUQA 2O7BA 2PTQA 2QGAB 1W27A 4CQ5A 3R6VA 1FURA 1TJWA 3BHGA 1FUPA 1I0AA 3KDZA 3CZOA 2O6YA 3RRPA 1U15A 5F91A 4ADLA 1KQ7A 3RD8A 1GK3A 1U16A 3NZ4A 1YFMA 2J91A 1TJUA 1YISA 3OCEA 4V2RA 4HGVA 2O7DA 4C6GA 4NSLA 4C5SA 4EFCA 2OHYA 3R6QA 3E04A 1YFEA 1DOFA 1Q5NA 2VD6A 4V2QA 1TJVA 1K7WA 3KDYA 3TV2A 4C5RA 3C8TA 3QBPA 5HW2A 2QVEA 1RE5A 2RJSA 2PTSA 1HY0A 2NYFA 1DCNA 2PFMA 1K62A 2O78A 3R6YA 1Y2MA 2HVGA 4ADMA 2E9FA 1J3UA 1HY1A 1EB4A 5EYTA 5EYVA 1TJ7A 1B8FA 2O7EA 4APAA 3GTDA 2YIIA 1T6PA 4MX2A 4EEIA 1GKMA 4C5UA 2PTRA 4BABA 1C3CA 1JSWA 5D6BA 1C3UA 2FUSA 3OCFA 1VDKA 4NLEA 3UNVA 2RJRA 2X75A 5F92A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NO9 A;  1GK2 A;  2NYN A;  4FFX A;  3GZH A;  1XWO A;  1AUW A;  1FUO A;  4FLC A;  2O7F A;  4APB A;  1GKJ A;  4BAA A;  1T6J A;  1FUQ A;  2O7B A;  2PTQ A;  2QGA B;  1W27 A;  4CQ5 A;  3R6V A;  1FUR A;  1TJW A;  3BHG A;  1FUP A;  1I0A A;  3KDZ A;  3CZO A;  2O6Y A;  3RRP A;  1U15 A;  5F91 A;  4ADL A;  1KQ7 A;  3RD8 A;  1GK3 A;  1U16 A;  3NZ4 A;  1YFM A;  2J91 A;  1TJU A;  1YIS A;  3OCE A;  4V2R A;  4HGV A;  2O7D A;  4C6G A;  4NSL A;  4C5S A;  4EFC A;  2OHY A;  3R6Q A;  3E04 A;  1YFE A;  1DOF A;  1Q5N A;  2VD6 A;  4V2Q A;  1TJV A;  1K7W A;  3KDY A;  3TV2 A;  4C5R A;  3C8T A;  3QBP A;  5HW2 A;  2QVE A;  1RE5 A;  2RJS A;  2PTS A;  1HY0 A;  2NYF A;  1DCN A;  2PFM A;  1K62 A;  2O78 A;  3R6Y A;  1Y2M A;  2HVG A;  4ADM A;  2E9F A;  1J3U A;  1HY1 A;  1EB4 A;  5EYT A;  5EYV A;  1TJ7 A;  1B8F A;  2O7E A;  4APA A;  3GTD A;  2YII A;  1T6P A;  4MX2 A;  4EEI A;  1GKM A;  4C5U A;  2PTR A;  4BAB A;  1C3C A;  1JSW A;  5D6B A;  1C3U A;  2FUS A;  3OCF A;  1VDK A;  4NLE A;  3UNV A;  2RJR A;  2X75 A;  5F92 A; 
#chains in the Genus database with same CATH topology
 3NO9 A;  1GK2 A;  2NYN A;  4FFX A;  3GZH A;  2FEL A;  1XWO A;  1AUW A;  1FUO A;  4FLC A;  3CRV A;  2O7F A;  4APB A;  1GKJ A;  2VSF A;  4BAA A;  1T6J A;  1FUQ A;  2O7B A;  2PTQ A;  2QGA B;  1W27 A;  4CQ5 A;  3R6V A;  1FUR A;  1TJW A;  3BHG A;  1FUP A;  1I0A A;  3KDZ A;  3CZO A;  2O6Y A;  3RRP A;  1U15 A;  5F91 A;  4ADL A;  2FEN A;  1KQ7 A;  1XL7 A;  3RD8 A;  1GK3 A;  1U16 A;  3NZ4 A;  1YFM A;  2J91 A;  1XLY A;  1TJU A;  1YIS A;  3OCE A;  4V2R A;  2VL7 A;  4HGV A;  2O7D A;  4C6G A;  1XMC A;  3CRW 1;  4NSL A;  4C5S A;  4EFC A;  2OHY A;  3R6Q A;  3E04 A;  1YFE A;  1DOF A;  1Q5N A;  2VD6 A;  4V2Q A;  1TJV A;  1K7W A;  3KDY A;  3TV2 A;  4C5R A;  3C8T A;  3QBP A;  5HW2 A;  2QVE A;  1RE5 A;  4WNL A;  2RJS A;  2PTS A;  1HY0 A;  1XL8 A;  2NYF A;  5H8W A;  1DCN A;  2PFM A;  4A15 A;  1K62 A;  2O78 A;  3R6Y A;  1Y2M A;  2HVG A;  4ADM A;  2E9F A;  1J3U A;  1HY1 A;  1EB4 A;  5EYT A;  5EYV A;  1TJ7 A;  1XMD A;  1B8F A;  2O7E A;  4APA A;  3GTD A;  2YII A;  1T6P A;  4MX2 A;  5M0I A;  4EEI A;  1GKM A;  4C5U A;  2PTR A;  4BAB A;  1C3C A;  5M0J A;  1JSW A;  5D6B A;  1C3U A;  2FUS A;  3OCF A;  1VDK A;  4NLE A;  3UNV A;  2RJR A;  2X75 A;  5F92 A; 
#chains in the Genus database with same CATH homology
 3NO9 A;  1GK2 A;  2NYN A;  4FFX A;  3GZH A;  1XWO A;  1AUW A;  1FUO A;  4FLC A;  2O7F A;  4APB A;  1GKJ A;  4BAA A;  1T6J A;  1FUQ A;  2O7B A;  2PTQ A;  2QGA B;  1W27 A;  4CQ5 A;  3R6V A;  1FUR A;  1TJW A;  3BHG A;  1FUP A;  1I0A A;  3KDZ A;  3CZO A;  2O6Y A;  3RRP A;  1U15 A;  5F91 A;  4ADL A;  1KQ7 A;  3RD8 A;  1GK3 A;  1U16 A;  3NZ4 A;  1YFM A;  2J91 A;  1TJU A;  1YIS A;  3OCE A;  4V2R A;  4HGV A;  2O7D A;  4C6G A;  4NSL A;  4C5S A;  4EFC A;  2OHY A;  3R6Q A;  3E04 A;  1YFE A;  1DOF A;  1Q5N A;  2VD6 A;  4V2Q A;  1TJV A;  1K7W A;  3KDY A;  3TV2 A;  4C5R A;  3C8T A;  3QBP A;  5HW2 A;  2QVE A;  1RE5 A;  2RJS A;  2PTS A;  1HY0 A;  2NYF A;  1DCN A;  2PFM A;  1K62 A;  2O78 A;  3R6Y A;  1Y2M A;  2HVG A;  4ADM A;  2E9F A;  1J3U A;  1HY1 A;  1EB4 A;  5EYT A;  5EYV A;  1TJ7 A;  1B8F A;  2O7E A;  4APA A;  3GTD A;  2YII A;  1T6P A;  4MX2 A;  4EEI A;  1GKM A;  4C5U A;  2PTR A;  4BAB A;  1C3C A;  1JSW A;  5D6B A;  1C3U A;  2FUS A;  3OCF A;  1VDK A;  4NLE A;  3UNV A;  2RJR A;  2X75 A;  5F92 A; 
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