3EJHA

Crystal structure of the fibronectin 8-9fni domain pair in complex with a type-i collagen peptide
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
91
structure length
91
Chain Sequence
DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQTYP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords Fibronectin
total genus 17
structure length 91
sequence length 91
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3ejhA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3ejhA02
1E8BA 2A55A 4AYIA 1OK9A 1G4FA 3M7PA 5I0QB 1GPZA 1CKLA 1O9AA 1QGBA 1GKGA 3KZJA 1LY2A 1VVDA 2LOJA 3INBC 3NFPI 4YNXA 1Z92B 2UWNA 2XWBF 1MD8A 2XRDA 4F4OC 2V8EA 1HFHA 2YRAA 2JGXA 3TVJA 1MD7A 2XQWC 2RKYA 1SS2A 1TPGA 3R62A 2JGWA 1OJVA 5JPMG 3O8EB 1HFIA 3ZD2A 1TPNA 5HYTB 1C1ZA 2W81A 1GHQB 3OP8A 3IX0A 4PZ5A 2RKZA 1OK3A 2RLQA 1OK2A 2KMSA 1FBRA 2XRBA 3ZRZA 3MQLA 3RJ3D 4C16A 4B2SA 2B5ID 1E5GA 4ZH1D 2O39C 2W80A 1U5MA 3L89M 2IZ3A 1PPQA 1ELVA 1QUBA 5FO8C 4ONTD 4AYDA 2CG6A 1QO6A 2CKUA 4JHSA 3ERBA 2JRAA 1OJYA 4B2RA 5HYPA 1VVCA 2IZ4A 2KRIA 2ERJA 3KXVA 1OJWA 2EHFA 4WJG2 2QY0A 2EC3A 3EJHA 4DJZA 4K12A 1Q3XA 3GOVA 1NWVA 1E88A 1H2PP 4MUCA 1GKNA 5HZPB 4A5WB 3IU3I 3OXUD 2G7IA 1H03P 3OEDC 1TPMA 2BZMA 2YBYA 2MCYA 3GXEA 3ZD1A 2CG7A 1ZJKA 2RL0A 1SRZA 1OK1A 1H2QP 4AYEA 2MCZA 3CALA 4CSYA 1G4GA 2WIIC 2RLPA 4AYMA 3SW0X 1HCCA 4FXGG 4IGDA 4J38B 3T5OA 4KKDA 5HYUB 1H04P 2XWJI 4LOSA 1UOTP 4LOTA
chains in the Genus database with same CATH superfamily
1RLHA 1E8BA 2A55A 4AYIA 1OK9A 1G4FA 3M7PA 5I0QB 2Y8SA 3VWOA 1GPZA 1CKLA 1O9AA 1QGBA 1GKGA 3KZJA 1LY2A 1VVDA 2LOJA 3INBC 3NFPI 4YNXA 1Z92B 2UWNA 2XWBF 1MD8A 2XRDA 4F4OC 2V8EA 1HFHA 2YRAA 2JGXA 3TVJA 1MD7A 2XQWC 3NJAA 2RKYA 2Y8TA 1SS2A 1TPGA 3R62A 2JGWA 1OJVA 5JPMG 3FGTA 3O8EB 1HFIA 5DN4A 3ZD2A 4MSLA 1TPNA 5HYTB 1C1ZA 2W81A 1GHQB 3OP8A 3IX0A 4PZ5A 4N7EA 3WSYA 2RKZA 1OK3A 2RLQA 1OK2A 2KMSA 1FBRA 2XRBA 3ZRZA 3MQLA 3RJ3D 4C16A 4B2SA 2B5ID 5DN5A 4ZH1D 2X2ZA 1E5GA 2O39C 2W80A 1U5MA 3L89M 2IZ3A 1PPQA 1ELVA 1QUBA 5FO8C 4ONTD 3K3TA 3WSXA 4AYDA 2CG6A 1QO6A 2CKUA 4JHSA 3ERBA 2JRAA 1OJYA 4B2RA 5HYPA 1VVCA 2IZ4A 2KRIA 2ERJA 3KXVA 1OJWA 2EHFA 3ZLEA 4WJG2 2QY0A 2EC3A 3EJHA 4DJZA 4K12A 1Q3XA 3F6KA 3GOVA 1NWVA 1E88A 1H2PP 4MUCA 1GKNA 5HZPB 3ZLDA 4A5WB 4PO7A 3IU3I 3OXUD 4BWCA 2G7IA 3CI0J 1H03P 3OEDC 3FGRA 1TPMA 2BZMA 2YBYA 2MCYA 3GXEA 3ZD1A 2CG7A 1ZJKA 2RL0A 1SRZA 1OK1A 1H2QP 4AYEA 2MCZA 2I2LA 3CALA 4CSYA 2Y8RA 1G4GA 2WIIC 2RLPA 4AYMA 3SW0X 1HCCA 4FXGG 4IGDA 4J38B 4APLA 2ZYCA 3T5OA 4KKDA 5HYUB 1H04P 2XWJI 4LOSA 1UOTP 4LOTA 4YIZA
chains in the Genus database with same CATH topology
1E8BA 2A55A 4AYIA 1OK9A 1G4FA 3M7PA 5I0QB 1GPZA 1CKLA 1O9AA 1QGBA 1GKGA 3KZJA 1LY2A 1VVDA 2LOJA 3INBC 3NFPI 4YNXA 1Z92B 2UWNA 2XWBF 1MD8A 2XRDA 4F4OC 2V8EA 1HFHA 2YRAA 2JGXA 3TVJA 1MD7A 2XQWC 2RKYA 1SS2A 1TPGA 3R62A 2JGWA 1OJVA 5JPMG 3O8EB 1HFIA 3ZD2A 1TPNA 5HYTB 1C1ZA 2W81A 1GHQB 3OP8A 3IX0A 4PZ5A 2RKZA 1OK3A 2RLQA 1OK2A 2KMSA 1FBRA 2XRBA 3ZRZA 3MQLA 3RJ3D 4C16A 4B2SA 2B5ID 1E5GA 4ZH1D 2O39C 2W80A 1U5MA 3L89M 2IZ3A 1PPQA 1ELVA 1QUBA 5FO8C 4ONTD 4AYDA 2CG6A 1QO6A 2CKUA 4JHSA 3ERBA 2JRAA 1OJYA 4B2RA 5HYPA 1VVCA 2IZ4A 2KRIA 2ERJA 3KXVA 1OJWA 2EHFA 4WJG2 2QY0A 2EC3A 3EJHA 4DJZA 4K12A 1Q3XA 3GOVA 1NWVA 1E88A 1H2PP 4MUCA 1GKNA 5HZPB 4A5WB 3IU3I 3OXUD 2G7IA 1H03P 3OEDC 1TPMA 2BZMA 2YBYA 2MCYA 3GXEA 3ZD1A 2CG7A 1ZJKA 2RL0A 1SRZA 1OK1A 1H2QP 4AYEA 2MCZA 3CALA 4CSYA 1G4GA 2WIIC 2RLPA 4AYMA 3SW0X 1HCCA 4FXGG 4IGDA 4J38B 3T5OA 4KKDA 5HYUB 1H04P 2XWJI 4LOSA 1UOTP 4LOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E8B A;  2A55 A;  4AYI A;  1OK9 A;  1G4F A;  3M7P A;  5I0Q B;  1GPZ A;  1CKL A;  1O9A A;  1QGB A;  1GKG A;  3KZJ A;  1LY2 A;  1VVD A;  2LOJ A;  3INB C;  3NFP I;  4YNX A;  1Z92 B;  2UWN A;  2XWB F;  1MD8 A;  2XRD A;  4F4O C;  2V8E A;  1HFH A;  2YRA A;  2JGX A;  3TVJ A;  1MD7 A;  2XQW C;  2RKY A;  1SS2 A;  1TPG A;  3R62 A;  2JGW A;  1OJV A;  5JPM G;  3O8E B;  1HFI A;  3ZD2 A;  1TPN A;  5HYT B;  1C1Z A;  2W81 A;  1GHQ B;  3OP8 A;  3IX0 A;  4PZ5 A;  2RKZ A;  1OK3 A;  2RLQ A;  1OK2 A;  2KMS A;  1FBR A;  2XRB A;  3ZRZ A;  3MQL A;  3RJ3 D;  4C16 A;  4B2S A;  2B5I D;  1E5G A;  4ZH1 D;  2O39 C;  2W80 A;  1U5M A;  3L89 M;  2IZ3 A;  1PPQ A;  1ELV A;  1QUB A;  5FO8 C;  4ONT D;  4AYD A;  2CG6 A;  1QO6 A;  2CKU A;  4JHS A;  3ERB A;  2JRA A;  1OJY A;  4B2R A;  5HYP A;  1VVC A;  2IZ4 A;  2KRI A;  2ERJ A;  3KXV A;  1OJW A;  2EHF A;  4WJG 2;  2QY0 A;  2EC3 A;  3EJH A;  4DJZ A;  4K12 A;  1Q3X A;  3GOV A;  1NWV A;  1E88 A;  1H2P P;  4MUC A;  1GKN A;  5HZP B;  4A5W B;  3IU3 I;  3OXU D;  2G7I A;  1H03 P;  3OED C;  1TPM A;  2BZM A;  2YBY A;  2MCY A;  3GXE A;  3ZD1 A;  2CG7 A;  1ZJK A;  2RL0 A;  1SRZ A;  1OK1 A;  1H2Q P;  4AYE A;  2MCZ A;  3CAL A;  4CSY A;  1G4G A;  2WII C;  2RLP A;  4AYM A;  3SW0 X;  1HCC A;  4FXG G;  4IGD A;  4J38 B;  3T5O A;  4KKD A;  5HYU B;  1H04 P;  2XWJ I;  4LOS A;  1UOT P;  4LOT A; 
#chains in the Genus database with same CATH topology
 1RLH A;  1E8B A;  2A55 A;  4AYI A;  1OK9 A;  1G4F A;  3M7P A;  5I0Q B;  2Y8S A;  3VWO A;  1GPZ A;  1CKL A;  1O9A A;  1QGB A;  1GKG A;  3KZJ A;  1LY2 A;  1VVD A;  2LOJ A;  3INB C;  3NFP I;  4YNX A;  1Z92 B;  2UWN A;  2XWB F;  1MD8 A;  2XRD A;  4F4O C;  2V8E A;  1HFH A;  2YRA A;  2JGX A;  3TVJ A;  1MD7 A;  2XQW C;  3NJA A;  2RKY A;  2Y8T A;  1SS2 A;  1TPG A;  3R62 A;  2JGW A;  1OJV A;  5JPM G;  3FGT A;  3O8E B;  1HFI A;  5DN4 A;  3ZD2 A;  4MSL A;  1TPN A;  5HYT B;  1C1Z A;  2W81 A;  1GHQ B;  3OP8 A;  3IX0 A;  4PZ5 A;  4N7E A;  3WSY A;  2RKZ A;  1OK3 A;  2RLQ A;  1OK2 A;  2KMS A;  1FBR A;  2XRB A;  3ZRZ A;  3MQL A;  3RJ3 D;  4C16 A;  4B2S A;  2B5I D;  5DN5 A;  4ZH1 D;  2X2Z A;  1E5G A;  2O39 C;  2W80 A;  1U5M A;  3L89 M;  2IZ3 A;  1PPQ A;  1ELV A;  1QUB A;  5FO8 C;  4ONT D;  3K3T A;  3WSX A;  4AYD A;  2CG6 A;  1QO6 A;  2CKU A;  4JHS A;  3ERB A;  2JRA A;  1OJY A;  4B2R A;  5HYP A;  1VVC A;  2IZ4 A;  2KRI A;  2ERJ A;  3KXV A;  1OJW A;  2EHF A;  3ZLE A;  4WJG 2;  2QY0 A;  2EC3 A;  3EJH A;  4DJZ A;  4K12 A;  1Q3X A;  3F6K A;  3GOV A;  1NWV A;  1E88 A;  1H2P P;  4MUC A;  1GKN A;  5HZP B;  3ZLD A;  4A5W B;  4PO7 A;  3IU3 I;  3OXU D;  4BWC A;  2G7I A;  3CI0 J;  1H03 P;  3OED C;  3FGR A;  1TPM A;  2BZM A;  2YBY A;  2MCY A;  3GXE A;  3ZD1 A;  2CG7 A;  1ZJK A;  2RL0 A;  1SRZ A;  1OK1 A;  1H2Q P;  4AYE A;  2MCZ A;  2I2L A;  3CAL A;  4CSY A;  2Y8R A;  1G4G A;  2WII C;  2RLP A;  4AYM A;  3SW0 X;  1HCC A;  4FXG G;  4IGD A;  4J38 B;  4APL A;  2ZYC A;  3T5O A;  4KKD A;  5HYU B;  1H04 P;  2XWJ I;  4LOS A;  1UOT P;  4LOT A;  4YIZ A; 
#chains in the Genus database with same CATH homology
 1E8B A;  2A55 A;  4AYI A;  1OK9 A;  1G4F A;  3M7P A;  5I0Q B;  1GPZ A;  1CKL A;  1O9A A;  1QGB A;  1GKG A;  3KZJ A;  1LY2 A;  1VVD A;  2LOJ A;  3INB C;  3NFP I;  4YNX A;  1Z92 B;  2UWN A;  2XWB F;  1MD8 A;  2XRD A;  4F4O C;  2V8E A;  1HFH A;  2YRA A;  2JGX A;  3TVJ A;  1MD7 A;  2XQW C;  2RKY A;  1SS2 A;  1TPG A;  3R62 A;  2JGW A;  1OJV A;  5JPM G;  3O8E B;  1HFI A;  3ZD2 A;  1TPN A;  5HYT B;  1C1Z A;  2W81 A;  1GHQ B;  3OP8 A;  3IX0 A;  4PZ5 A;  2RKZ A;  1OK3 A;  2RLQ A;  1OK2 A;  2KMS A;  1FBR A;  2XRB A;  3ZRZ A;  3MQL A;  3RJ3 D;  4C16 A;  4B2S A;  2B5I D;  1E5G A;  4ZH1 D;  2O39 C;  2W80 A;  1U5M A;  3L89 M;  2IZ3 A;  1PPQ A;  1ELV A;  1QUB A;  5FO8 C;  4ONT D;  4AYD A;  2CG6 A;  1QO6 A;  2CKU A;  4JHS A;  3ERB A;  2JRA A;  1OJY A;  4B2R A;  5HYP A;  1VVC A;  2IZ4 A;  2KRI A;  2ERJ A;  3KXV A;  1OJW A;  2EHF A;  4WJG 2;  2QY0 A;  2EC3 A;  3EJH A;  4DJZ A;  4K12 A;  1Q3X A;  3GOV A;  1NWV A;  1E88 A;  1H2P P;  4MUC A;  1GKN A;  5HZP B;  4A5W B;  3IU3 I;  3OXU D;  2G7I A;  1H03 P;  3OED C;  1TPM A;  2BZM A;  2YBY A;  2MCY A;  3GXE A;  3ZD1 A;  2CG7 A;  1ZJK A;  2RL0 A;  1SRZ A;  1OK1 A;  1H2Q P;  4AYE A;  2MCZ A;  3CAL A;  4CSY A;  1G4G A;  2WII C;  2RLP A;  4AYM A;  3SW0 X;  1HCC A;  4FXG G;  4IGD A;  4J38 B;  3T5O A;  4KKD A;  5HYU B;  1H04 P;  2XWJ I;  4LOS A;  1UOT P;  4LOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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