3EJHA

Crystal structure of the fibronectin 8-9fni domain pair in complex with a type-i collagen peptide
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
91
structure length
91
Chain Sequence
DQCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPVDQCQDSETGTFYQIGDSWEKYVHGVRYQCYCYGRGIGEWHCQPLQTYP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords Fibronectin
total genus 17
structure length 91
sequence length 91
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3ejhA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3ejhA02
4KKDA 2JGXA 1QGBA 4ONTD 2W81A 4K12A 1E8BA 1HFIA 1ZJKA 4DJZA 3OEDC 1SRZA 1PPQA 1GHQB 1OK2A 1LY2A 3OP8A 2RLQA 2LOJA 1O9AA 2MCZA 4IGDA 2KRIA 2XRDA 4LOTA 1H2QP 4MUCA 3ERBA 1U5MA 1H03P 4PZ5A 4B2SA 1OK3A 1H04P 3KXVA 4AYEA 2G7IA 3M7PA 5HYUB 4AYMA 1QUBA 3TVJA 5FO8C 2A55A 1OJWA 3IU3I 3GXEA 1ELVA 5I0QB 2YBYA 3CALA 1SS2A 3INBC 4F4OC 1G4GA 1GPZA 1H2PP 4JHSA 4YNXA 1MD7A 2EC3A 2O39C 2IZ4A 3NFPI 5HYPA 1VVCA 3GOVA 3IX0A 1OK1A 3RJ3D 3T5OA 4CSYA 4C16A 1GKGA 4A5WB 1E88A 2EHFA 1FBRA 1C1ZA 3O8EB 4AYIA 5HZPB 3KZJA 3SW0X 1OJYA 1UOTP 2V8EA 3OXUD 2QY0A 2JGWA 1Q3XA 1TPNA 1QO6A 2YRAA 5JPMG 4WJG2 1CKLA 1TPGA 2CKUA 3L89M 5HYTB 2WIIC 4J38B 2RL0A 3MQLA 2RKZA 1HCCA 2KMSA 4LOSA 4ZH1D 1OK9A 3EJHA 1HFHA 2JRAA 2BZMA 2ERJA 1Z92B 2CG7A 4FXGG 2IZ3A 2XWBF 1E5GA 2UWNA 3ZRZA 1MD8A 2RKYA 4AYDA 3R62A 1NWVA 1OJVA 1TPMA 1G4FA 2XWJI 2XRBA 2B5ID 2W80A 1GKNA 2RLPA 3ZD2A 1VVDA 4B2RA 2XQWC 2CG6A 3ZD1A 2MCYA
chains in the Genus database with same CATH superfamily
4KKDA 2JGXA 1QGBA 4ONTD 2W81A 4K12A 1E8BA 1HFIA 1ZJKA 4DJZA 3OEDC 1SRZA 1PPQA 2Y8RA 1GHQB 1OK2A 1LY2A 3OP8A 2RLQA 2LOJA 1O9AA 2MCZA 4IGDA 2KRIA 2XRDA 4LOTA 1H2QP 4MUCA 3ERBA 1U5MA 1H03P 4PZ5A 4B2SA 3FGRA 1OK3A 1H04P 3KXVA 4AYEA 2G7IA 3M7PA 5HYUB 3WSXA 4AYMA 3CI0J 1QUBA 3TVJA 2I2LA 5FO8C 2A55A 1OJWA 3IU3I 3GXEA 1ELVA 2Y8SA 3ZLEA 5I0QB 2YBYA 3CALA 1SS2A 3INBC 4F4OC 1G4GA 1GPZA 1H2PP 4JHSA 4YNXA 1MD7A 2EC3A 2O39C 2IZ4A 3NFPI 5HYPA 1VVCA 2Y8TA 3GOVA 3IX0A 1OK1A 3RJ3D 3T5OA 3ZLDA 4CSYA 4PO7A 4C16A 1GKGA 4A5WB 1E88A 2ZYCA 3VWOA 2EHFA 1FBRA 1C1ZA 3O8EB 4AYIA 5HZPB 3KZJA 3SW0X 1OJYA 1UOTP 2V8EA 3OXUD 3WSYA 3NJAA 2QY0A 2JGWA 4MSLA 1Q3XA 1TPNA 1QO6A 2YRAA 5JPMG 4WJG2 5DN5A 1CKLA 1TPGA 2CKUA 3L89M 4APLA 5HYTB 2WIIC 4J38B 2RL0A 4N7EA 3MQLA 2RKZA 1HCCA 2KMSA 3FGTA 4LOSA 4ZH1D 1OK9A 3EJHA 1HFHA 2JRAA 2BZMA 2ERJA 2X2ZA 1Z92B 1RLHA 2CG7A 4BWCA 4FXGG 2IZ3A 4YIZA 2XWBF 1E5GA 2UWNA 3F6KA 3ZRZA 1MD8A 2RKYA 4AYDA 3K3TA 3R62A 5DN4A 1NWVA 1OJVA 1TPMA 1G4FA 2XWJI 2XRBA 2B5ID 2W80A 1GKNA 2RLPA 3ZD2A 1VVDA 4B2RA 2XQWC 2CG6A 3ZD1A 2MCYA
chains in the Genus database with same CATH topology
4KKDA 2JGXA 1QGBA 4ONTD 2W81A 4K12A 1E8BA 1HFIA 1ZJKA 4DJZA 3OEDC 1SRZA 1PPQA 1GHQB 1OK2A 1LY2A 3OP8A 2RLQA 2LOJA 1O9AA 2MCZA 4IGDA 2KRIA 2XRDA 4LOTA 1H2QP 4MUCA 3ERBA 1U5MA 1H03P 4PZ5A 4B2SA 1OK3A 1H04P 3KXVA 4AYEA 2G7IA 3M7PA 5HYUB 4AYMA 1QUBA 3TVJA 5FO8C 2A55A 1OJWA 3IU3I 3GXEA 1ELVA 5I0QB 2YBYA 3CALA 1SS2A 3INBC 4F4OC 1G4GA 1GPZA 1H2PP 4JHSA 4YNXA 1MD7A 2EC3A 2O39C 2IZ4A 3NFPI 5HYPA 1VVCA 3GOVA 3IX0A 1OK1A 3RJ3D 3T5OA 4CSYA 4C16A 1GKGA 4A5WB 1E88A 2EHFA 1FBRA 1C1ZA 3O8EB 4AYIA 5HZPB 3KZJA 3SW0X 1OJYA 1UOTP 2V8EA 3OXUD 2QY0A 2JGWA 1Q3XA 1TPNA 1QO6A 2YRAA 5JPMG 4WJG2 1CKLA 1TPGA 2CKUA 3L89M 5HYTB 2WIIC 4J38B 2RL0A 3MQLA 2RKZA 1HCCA 2KMSA 4LOSA 4ZH1D 1OK9A 3EJHA 1HFHA 2JRAA 2BZMA 2ERJA 1Z92B 2CG7A 4FXGG 2IZ3A 2XWBF 1E5GA 2UWNA 3ZRZA 1MD8A 2RKYA 4AYDA 3R62A 1NWVA 1OJVA 1TPMA 1G4FA 2XWJI 2XRBA 2B5ID 2W80A 1GKNA 2RLPA 3ZD2A 1VVDA 4B2RA 2XQWC 2CG6A 3ZD1A 2MCYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KKD A;  2JGX A;  1QGB A;  4ONT D;  2W81 A;  4K12 A;  1E8B A;  1HFI A;  1ZJK A;  4DJZ A;  3OED C;  1SRZ A;  1PPQ A;  1GHQ B;  1OK2 A;  1LY2 A;  3OP8 A;  2RLQ A;  2LOJ A;  1O9A A;  2MCZ A;  4IGD A;  2KRI A;  2XRD A;  4LOT A;  1H2Q P;  4MUC A;  3ERB A;  1U5M A;  1H03 P;  4PZ5 A;  4B2S A;  1OK3 A;  1H04 P;  3KXV A;  4AYE A;  2G7I A;  3M7P A;  5HYU B;  4AYM A;  1QUB A;  3TVJ A;  5FO8 C;  2A55 A;  1OJW A;  3IU3 I;  3GXE A;  1ELV A;  5I0Q B;  2YBY A;  3CAL A;  1SS2 A;  3INB C;  4F4O C;  1G4G A;  1GPZ A;  1H2P P;  4JHS A;  4YNX A;  1MD7 A;  2EC3 A;  2O39 C;  2IZ4 A;  3NFP I;  5HYP A;  1VVC A;  3GOV A;  3IX0 A;  1OK1 A;  3RJ3 D;  3T5O A;  4CSY A;  4C16 A;  1GKG A;  4A5W B;  1E88 A;  2EHF A;  1FBR A;  1C1Z A;  3O8E B;  4AYI A;  5HZP B;  3KZJ A;  3SW0 X;  1OJY A;  1UOT P;  2V8E A;  3OXU D;  2QY0 A;  2JGW A;  1Q3X A;  1TPN A;  1QO6 A;  2YRA A;  5JPM G;  4WJG 2;  1CKL A;  1TPG A;  2CKU A;  3L89 M;  5HYT B;  2WII C;  4J38 B;  2RL0 A;  3MQL A;  2RKZ A;  1HCC A;  2KMS A;  4LOS A;  4ZH1 D;  1OK9 A;  3EJH A;  1HFH A;  2JRA A;  2BZM A;  2ERJ A;  1Z92 B;  2CG7 A;  4FXG G;  2IZ3 A;  2XWB F;  1E5G A;  2UWN A;  3ZRZ A;  1MD8 A;  2RKY A;  4AYD A;  3R62 A;  1NWV A;  1OJV A;  1TPM A;  1G4F A;  2XWJ I;  2XRB A;  2B5I D;  2W80 A;  1GKN A;  2RLP A;  3ZD2 A;  1VVD A;  4B2R A;  2XQW C;  2CG6 A;  3ZD1 A;  2MCY A; 
#chains in the Genus database with same CATH topology
 4KKD A;  2JGX A;  1QGB A;  4ONT D;  2W81 A;  4K12 A;  1E8B A;  1HFI A;  1ZJK A;  4DJZ A;  3OED C;  1SRZ A;  1PPQ A;  2Y8R A;  1GHQ B;  1OK2 A;  1LY2 A;  3OP8 A;  2RLQ A;  2LOJ A;  1O9A A;  2MCZ A;  4IGD A;  2KRI A;  2XRD A;  4LOT A;  1H2Q P;  4MUC A;  3ERB A;  1U5M A;  1H03 P;  4PZ5 A;  4B2S A;  3FGR A;  1OK3 A;  1H04 P;  3KXV A;  4AYE A;  2G7I A;  3M7P A;  5HYU B;  3WSX A;  4AYM A;  3CI0 J;  1QUB A;  3TVJ A;  2I2L A;  5FO8 C;  2A55 A;  1OJW A;  3IU3 I;  3GXE A;  1ELV A;  2Y8S A;  3ZLE A;  5I0Q B;  2YBY A;  3CAL A;  1SS2 A;  3INB C;  4F4O C;  1G4G A;  1GPZ A;  1H2P P;  4JHS A;  4YNX A;  1MD7 A;  2EC3 A;  2O39 C;  2IZ4 A;  3NFP I;  5HYP A;  1VVC A;  2Y8T A;  3GOV A;  3IX0 A;  1OK1 A;  3RJ3 D;  3T5O A;  3ZLD A;  4CSY A;  4PO7 A;  4C16 A;  1GKG A;  4A5W B;  1E88 A;  2ZYC A;  3VWO A;  2EHF A;  1FBR A;  1C1Z A;  3O8E B;  4AYI A;  5HZP B;  3KZJ A;  3SW0 X;  1OJY A;  1UOT P;  2V8E A;  3OXU D;  3WSY A;  3NJA A;  2QY0 A;  2JGW A;  4MSL A;  1Q3X A;  1TPN A;  1QO6 A;  2YRA A;  5JPM G;  4WJG 2;  5DN5 A;  1CKL A;  1TPG A;  2CKU A;  3L89 M;  4APL A;  5HYT B;  2WII C;  4J38 B;  2RL0 A;  4N7E A;  3MQL A;  2RKZ A;  1HCC A;  2KMS A;  3FGT A;  4LOS A;  4ZH1 D;  1OK9 A;  3EJH A;  1HFH A;  2JRA A;  2BZM A;  2ERJ A;  2X2Z A;  1Z92 B;  1RLH A;  2CG7 A;  4BWC A;  4FXG G;  2IZ3 A;  4YIZ A;  2XWB F;  1E5G A;  2UWN A;  3F6K A;  3ZRZ A;  1MD8 A;  2RKY A;  4AYD A;  3K3T A;  3R62 A;  5DN4 A;  1NWV A;  1OJV A;  1TPM A;  1G4F A;  2XWJ I;  2XRB A;  2B5I D;  2W80 A;  1GKN A;  2RLP A;  3ZD2 A;  1VVD A;  4B2R A;  2XQW C;  2CG6 A;  3ZD1 A;  2MCY A; 
#chains in the Genus database with same CATH homology
 4KKD A;  2JGX A;  1QGB A;  4ONT D;  2W81 A;  4K12 A;  1E8B A;  1HFI A;  1ZJK A;  4DJZ A;  3OED C;  1SRZ A;  1PPQ A;  1GHQ B;  1OK2 A;  1LY2 A;  3OP8 A;  2RLQ A;  2LOJ A;  1O9A A;  2MCZ A;  4IGD A;  2KRI A;  2XRD A;  4LOT A;  1H2Q P;  4MUC A;  3ERB A;  1U5M A;  1H03 P;  4PZ5 A;  4B2S A;  1OK3 A;  1H04 P;  3KXV A;  4AYE A;  2G7I A;  3M7P A;  5HYU B;  4AYM A;  1QUB A;  3TVJ A;  5FO8 C;  2A55 A;  1OJW A;  3IU3 I;  3GXE A;  1ELV A;  5I0Q B;  2YBY A;  3CAL A;  1SS2 A;  3INB C;  4F4O C;  1G4G A;  1GPZ A;  1H2P P;  4JHS A;  4YNX A;  1MD7 A;  2EC3 A;  2O39 C;  2IZ4 A;  3NFP I;  5HYP A;  1VVC A;  3GOV A;  3IX0 A;  1OK1 A;  3RJ3 D;  3T5O A;  4CSY A;  4C16 A;  1GKG A;  4A5W B;  1E88 A;  2EHF A;  1FBR A;  1C1Z A;  3O8E B;  4AYI A;  5HZP B;  3KZJ A;  3SW0 X;  1OJY A;  1UOT P;  2V8E A;  3OXU D;  2QY0 A;  2JGW A;  1Q3X A;  1TPN A;  1QO6 A;  2YRA A;  5JPM G;  4WJG 2;  1CKL A;  1TPG A;  2CKU A;  3L89 M;  5HYT B;  2WII C;  4J38 B;  2RL0 A;  3MQL A;  2RKZ A;  1HCC A;  2KMS A;  4LOS A;  4ZH1 D;  1OK9 A;  3EJH A;  1HFH A;  2JRA A;  2BZM A;  2ERJ A;  1Z92 B;  2CG7 A;  4FXG G;  2IZ3 A;  2XWB F;  1E5G A;  2UWN A;  3ZRZ A;  1MD8 A;  2RKY A;  4AYD A;  3R62 A;  1NWV A;  1OJV A;  1TPM A;  1G4F A;  2XWJ I;  2XRB A;  2B5I D;  2W80 A;  1GKN A;  2RLP A;  3ZD2 A;  1VVD A;  4B2R A;  2XQW C;  2CG6 A;  3ZD1 A;  2MCY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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