3GOVA

Crystal structure of the catalytic region of human masp-1
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
147
structure length
147
Chain Sequence
GNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTCLPVCGLPKFSRK
2040608010012014014012010080604020
0510152025Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
source organism Homo sapiens
publication title MASP-1, a promiscuous complement protease: structure of its catalytic region reveals the basis of its broad specificity.
pubmed doi rcsb
molecule keywords MASP-1
total genus 27
structure length 147
sequence length 147
ec nomenclature ec 3.4.21.-:
pdb deposition date 2009-03-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3govA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3govA02
2G7IA 2W80A 3EJHA 3ERBA 5JPMG 1VVDA 1UOTP 4AYMA 1E5GA 2XWBF 1CKLA 1SRZA 3ZRZA 1C1ZA 4K12A 5HZPB 1Q3XA 2RKYA 2EC3A 2KRIA 2JGXA 4J38B 2B5ID 3IX0A 2EHFA 2YRAA 3GOVA 2BZMA 1GKNA 3INBC 2RL0A 2UWNA 2RLQA 1HCCA 1SS2A 4ZH1D 5HYUB 2XWJI 2MCYA 3ZD2A 4PZ5A 5FO8C 3GXEA 4JHSA 3O8EB 4F4OC 4FXGG 3ZD1A 4B2RA 2XRBA 4LOSA 3T5OA 3OP8A 2YBYA 2RLPA 2WIIC 2LOJA 4MUCA 1GKGA 1OK1A 2KMSA 4AYEA 1O9AA 2ERJA 1E8BA 1OK3A 1GHQB 1FBRA 1QUBA 1QGBA 3TVJA 1HFHA 3CALA 1MD8A 1ZJKA 1GPZA 1OJYA 5HYTB 1TPMA 1OJVA 1MD7A 1OJWA 2A55A 2CG6A 2V8EA 1VVCA 1H03P 1PPQA 3L89M 1G4GA 4AYDA 2RKZA 1QO6A 2IZ3A 3KXVA 1OK2A 1H04P 2CG7A 4IGDA 4CSYA 4DJZA 5I0QB 1H2PP 2XQWC 2JRAA 4ONTD 1Z92B 3R62A 1LY2A 4A5WB 2MCZA 2QY0A 4WJG2 3RJ3D 1U5MA 4AYIA 4LOTA 3NFPI 1TPNA 4KKDA 2IZ4A 4C16A 3OEDC 3KZJA 2XRDA 1ELVA 3IU3I 4YNXA 1E88A 2O39C 3MQLA 5HYPA 3SW0X 1TPGA 1H2QP 1OK9A 2CKUA 2W81A 3OXUD 3M7PA 1G4FA 1NWVA 4B2SA 2JGWA 1HFIA
chains in the Genus database with same CATH superfamily
4PO7A 3NJAA 3CI0J 2G7IA 2W80A 5DN4A 3EJHA 3ERBA 2Y8TA 5JPMG 1VVDA 1UOTP 3ZLEA 4AYMA 1E5GA 2XWBF 5DN5A 1CKLA 1SRZA 3ZRZA 1C1ZA 4K12A 5HZPB 1Q3XA 2RKYA 4N7EA 2EC3A 3FGRA 2KRIA 2JGXA 4J38B 2B5ID 3IX0A 3K3TA 2EHFA 2YRAA 3GOVA 2BZMA 1GKNA 3INBC 2RL0A 2UWNA 2RLQA 1HCCA 1SS2A 4ZH1D 5HYUB 2XWJI 2MCYA 1RLHA 3ZD2A 4PZ5A 5FO8C 3GXEA 4JHSA 3O8EB 4F4OC 4FXGG 3ZD1A 4B2RA 2XRBA 4LOSA 3T5OA 3OP8A 2YBYA 4YIZA 2RLPA 2WIIC 2LOJA 4MUCA 1GKGA 1OK1A 2KMSA 2Y8RA 4AYEA 1O9AA 2ERJA 1E8BA 4MSLA 1OK3A 1GHQB 1FBRA 1QUBA 3VWOA 2ZYCA 3FGTA 1QGBA 3TVJA 1HFHA 3CALA 1MD8A 1ZJKA 1GPZA 1OJYA 3F6KA 5HYTB 1TPMA 1OJVA 1MD7A 1OJWA 2A55A 2CG6A 2V8EA 4APLA 1VVCA 1H03P 1PPQA 3L89M 1G4GA 4AYDA 2RKZA 1QO6A 2IZ3A 3KXVA 1OK2A 1H04P 2CG7A 4IGDA 4CSYA 4DJZA 5I0QB 1H2PP 2XQWC 2JRAA 2X2ZA 2Y8SA 4ONTD 4BWCA 1Z92B 3R62A 1LY2A 4A5WB 2MCZA 3WSXA 2QY0A 4WJG2 3RJ3D 1U5MA 4AYIA 4LOTA 3NFPI 1TPNA 4KKDA 2IZ4A 4C16A 3OEDC 3KZJA 2XRDA 1ELVA 3IU3I 4YNXA 1E88A 2O39C 3MQLA 3ZLDA 5HYPA 3WSYA 3SW0X 1TPGA 1H2QP 1OK9A 2CKUA 2W81A 3OXUD 3M7PA 2I2LA 1G4FA 1NWVA 4B2SA 2JGWA 1HFIA
chains in the Genus database with same CATH topology
2G7IA 2W80A 3EJHA 3ERBA 5JPMG 1VVDA 1UOTP 4AYMA 1E5GA 2XWBF 1CKLA 1SRZA 3ZRZA 1C1ZA 4K12A 5HZPB 1Q3XA 2RKYA 2EC3A 2KRIA 2JGXA 4J38B 2B5ID 3IX0A 2EHFA 2YRAA 3GOVA 2BZMA 1GKNA 3INBC 2RL0A 2UWNA 2RLQA 1HCCA 1SS2A 4ZH1D 5HYUB 2XWJI 2MCYA 3ZD2A 4PZ5A 5FO8C 3GXEA 4JHSA 3O8EB 4F4OC 4FXGG 3ZD1A 4B2RA 2XRBA 4LOSA 3T5OA 3OP8A 2YBYA 2RLPA 2WIIC 2LOJA 4MUCA 1GKGA 1OK1A 2KMSA 4AYEA 1O9AA 2ERJA 1E8BA 1OK3A 1GHQB 1FBRA 1QUBA 1QGBA 3TVJA 1HFHA 3CALA 1MD8A 1ZJKA 1GPZA 1OJYA 5HYTB 1TPMA 1OJVA 1MD7A 1OJWA 2A55A 2CG6A 2V8EA 1VVCA 1H03P 1PPQA 3L89M 1G4GA 4AYDA 2RKZA 1QO6A 2IZ3A 3KXVA 1OK2A 1H04P 2CG7A 4IGDA 4CSYA 4DJZA 5I0QB 1H2PP 2XQWC 2JRAA 4ONTD 1Z92B 3R62A 1LY2A 4A5WB 2MCZA 2QY0A 4WJG2 3RJ3D 1U5MA 4AYIA 4LOTA 3NFPI 1TPNA 4KKDA 2IZ4A 4C16A 3OEDC 3KZJA 2XRDA 1ELVA 3IU3I 4YNXA 1E88A 2O39C 3MQLA 5HYPA 3SW0X 1TPGA 1H2QP 1OK9A 2CKUA 2W81A 3OXUD 3M7PA 1G4FA 1NWVA 4B2SA 2JGWA 1HFIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2G7I A;  2W80 A;  3EJH A;  3ERB A;  5JPM G;  1VVD A;  1UOT P;  4AYM A;  1E5G A;  2XWB F;  1CKL A;  1SRZ A;  3ZRZ A;  1C1Z A;  4K12 A;  5HZP B;  1Q3X A;  2RKY A;  2EC3 A;  2KRI A;  2JGX A;  4J38 B;  2B5I D;  3IX0 A;  2EHF A;  2YRA A;  3GOV A;  2BZM A;  1GKN A;  3INB C;  2RL0 A;  2UWN A;  2RLQ A;  1HCC A;  1SS2 A;  4ZH1 D;  5HYU B;  2XWJ I;  2MCY A;  3ZD2 A;  4PZ5 A;  5FO8 C;  3GXE A;  4JHS A;  3O8E B;  4F4O C;  4FXG G;  3ZD1 A;  4B2R A;  2XRB A;  4LOS A;  3T5O A;  3OP8 A;  2YBY A;  2RLP A;  2WII C;  2LOJ A;  4MUC A;  1GKG A;  1OK1 A;  2KMS A;  4AYE A;  1O9A A;  2ERJ A;  1E8B A;  1OK3 A;  1GHQ B;  1FBR A;  1QUB A;  1QGB A;  3TVJ A;  1HFH A;  3CAL A;  1MD8 A;  1ZJK A;  1GPZ A;  1OJY A;  5HYT B;  1TPM A;  1OJV A;  1MD7 A;  1OJW A;  2A55 A;  2CG6 A;  2V8E A;  1VVC A;  1H03 P;  1PPQ A;  3L89 M;  1G4G A;  4AYD A;  2RKZ A;  1QO6 A;  2IZ3 A;  3KXV A;  1OK2 A;  1H04 P;  2CG7 A;  4IGD A;  4CSY A;  4DJZ A;  5I0Q B;  1H2P P;  2XQW C;  2JRA A;  4ONT D;  1Z92 B;  3R62 A;  1LY2 A;  4A5W B;  2MCZ A;  2QY0 A;  4WJG 2;  3RJ3 D;  1U5M A;  4AYI A;  4LOT A;  3NFP I;  1TPN A;  4KKD A;  2IZ4 A;  4C16 A;  3OED C;  3KZJ A;  2XRD A;  1ELV A;  3IU3 I;  4YNX A;  1E88 A;  2O39 C;  3MQL A;  5HYP A;  3SW0 X;  1TPG A;  1H2Q P;  1OK9 A;  2CKU A;  2W81 A;  3OXU D;  3M7P A;  1G4F A;  1NWV A;  4B2S A;  2JGW A;  1HFI A; 
#chains in the Genus database with same CATH topology
 4PO7 A;  3NJA A;  3CI0 J;  2G7I A;  2W80 A;  5DN4 A;  3EJH A;  3ERB A;  2Y8T A;  5JPM G;  1VVD A;  1UOT P;  3ZLE A;  4AYM A;  1E5G A;  2XWB F;  5DN5 A;  1CKL A;  1SRZ A;  3ZRZ A;  1C1Z A;  4K12 A;  5HZP B;  1Q3X A;  2RKY A;  4N7E A;  2EC3 A;  3FGR A;  2KRI A;  2JGX A;  4J38 B;  2B5I D;  3IX0 A;  3K3T A;  2EHF A;  2YRA A;  3GOV A;  2BZM A;  1GKN A;  3INB C;  2RL0 A;  2UWN A;  2RLQ A;  1HCC A;  1SS2 A;  4ZH1 D;  5HYU B;  2XWJ I;  2MCY A;  1RLH A;  3ZD2 A;  4PZ5 A;  5FO8 C;  3GXE A;  4JHS A;  3O8E B;  4F4O C;  4FXG G;  3ZD1 A;  4B2R A;  2XRB A;  4LOS A;  3T5O A;  3OP8 A;  2YBY A;  4YIZ A;  2RLP A;  2WII C;  2LOJ A;  4MUC A;  1GKG A;  1OK1 A;  2KMS A;  2Y8R A;  4AYE A;  1O9A A;  2ERJ A;  1E8B A;  4MSL A;  1OK3 A;  1GHQ B;  1FBR A;  1QUB A;  3VWO A;  2ZYC A;  3FGT A;  1QGB A;  3TVJ A;  1HFH A;  3CAL A;  1MD8 A;  1ZJK A;  1GPZ A;  1OJY A;  3F6K A;  5HYT B;  1TPM A;  1OJV A;  1MD7 A;  1OJW A;  2A55 A;  2CG6 A;  2V8E A;  4APL A;  1VVC A;  1H03 P;  1PPQ A;  3L89 M;  1G4G A;  4AYD A;  2RKZ A;  1QO6 A;  2IZ3 A;  3KXV A;  1OK2 A;  1H04 P;  2CG7 A;  4IGD A;  4CSY A;  4DJZ A;  5I0Q B;  1H2P P;  2XQW C;  2JRA A;  2X2Z A;  2Y8S A;  4ONT D;  4BWC A;  1Z92 B;  3R62 A;  1LY2 A;  4A5W B;  2MCZ A;  3WSX A;  2QY0 A;  4WJG 2;  3RJ3 D;  1U5M A;  4AYI A;  4LOT A;  3NFP I;  1TPN A;  4KKD A;  2IZ4 A;  4C16 A;  3OED C;  3KZJ A;  2XRD A;  1ELV A;  3IU3 I;  4YNX A;  1E88 A;  2O39 C;  3MQL A;  3ZLD A;  5HYP A;  3WSY A;  3SW0 X;  1TPG A;  1H2Q P;  1OK9 A;  2CKU A;  2W81 A;  3OXU D;  3M7P A;  2I2L A;  1G4F A;  1NWV A;  4B2S A;  2JGW A;  1HFI A; 
#chains in the Genus database with same CATH homology
 2G7I A;  2W80 A;  3EJH A;  3ERB A;  5JPM G;  1VVD A;  1UOT P;  4AYM A;  1E5G A;  2XWB F;  1CKL A;  1SRZ A;  3ZRZ A;  1C1Z A;  4K12 A;  5HZP B;  1Q3X A;  2RKY A;  2EC3 A;  2KRI A;  2JGX A;  4J38 B;  2B5I D;  3IX0 A;  2EHF A;  2YRA A;  3GOV A;  2BZM A;  1GKN A;  3INB C;  2RL0 A;  2UWN A;  2RLQ A;  1HCC A;  1SS2 A;  4ZH1 D;  5HYU B;  2XWJ I;  2MCY A;  3ZD2 A;  4PZ5 A;  5FO8 C;  3GXE A;  4JHS A;  3O8E B;  4F4O C;  4FXG G;  3ZD1 A;  4B2R A;  2XRB A;  4LOS A;  3T5O A;  3OP8 A;  2YBY A;  2RLP A;  2WII C;  2LOJ A;  4MUC A;  1GKG A;  1OK1 A;  2KMS A;  4AYE A;  1O9A A;  2ERJ A;  1E8B A;  1OK3 A;  1GHQ B;  1FBR A;  1QUB A;  1QGB A;  3TVJ A;  1HFH A;  3CAL A;  1MD8 A;  1ZJK A;  1GPZ A;  1OJY A;  5HYT B;  1TPM A;  1OJV A;  1MD7 A;  1OJW A;  2A55 A;  2CG6 A;  2V8E A;  1VVC A;  1H03 P;  1PPQ A;  3L89 M;  1G4G A;  4AYD A;  2RKZ A;  1QO6 A;  2IZ3 A;  3KXV A;  1OK2 A;  1H04 P;  2CG7 A;  4IGD A;  4CSY A;  4DJZ A;  5I0Q B;  1H2P P;  2XQW C;  2JRA A;  4ONT D;  1Z92 B;  3R62 A;  1LY2 A;  4A5W B;  2MCZ A;  2QY0 A;  4WJG 2;  3RJ3 D;  1U5M A;  4AYI A;  4LOT A;  3NFP I;  1TPN A;  4KKD A;  2IZ4 A;  4C16 A;  3OED C;  3KZJ A;  2XRD A;  1ELV A;  3IU3 I;  4YNX A;  1E88 A;  2O39 C;  3MQL A;  5HYP A;  3SW0 X;  1TPG A;  1H2Q P;  1OK9 A;  2CKU A;  2W81 A;  3OXU D;  3M7P A;  1G4F A;  1NWV A;  4B2S A;  2JGW A;  1HFI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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