3RJ3D

Complement components factor h ccp19-20 (s1191l mutant) and c3d in complex
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
125
structure length
125
Chain Sequence
GKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYLRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O1 (108-165)EMPTYUpdating...
connected with : NaN
molecule tags Protein binding
source organism Homo sapiens
publication title Structural and functional characterization of the product of disease-related factor h gene conversion.
pubmed doi rcsb
molecule keywords Complement C3d fragment
total genus 26
structure length 125
sequence length 125
chains with identical sequence E, F
ec nomenclature
pdb deposition date 2011-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3rj3D01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3rj3D02
5FO8C 1CKLA 1SS2A 4K12A 2YBYA 4IGDA 2BZMA 1OJWA 3OXUD 3INBC 1MD8A 3M7PA 1H03P 2CG7A 1QGBA 3OP8A 1VVDA 2RLPA 1FBRA 1ZJKA 1E5GA 1G4GA 1PPQA 2KMSA 2JGWA 4ZH1D 1LY2A 1H2QP 1Z92B 1GKNA 2G7IA 3NFPI 1GHQB 4MUCA 2MCYA 3GXEA 2EHFA 3OEDC 3RJ3D 4AYMA 3SW0X 4WJG2 1OJVA 5HYTB 5JPMG 4CSYA 1UOTP 1E88A 1G4FA 1H04P 4YNXA 2JGXA 2IZ4A 3T5OA 1H2PP 3L89M 1ELVA 3TVJA 1TPNA 2XWJI 1HCCA 2QY0A 3O8EB 4FXGG 1OJYA 2CKUA 1OK2A 3IU3I 1QO6A 2W80A 5I0QB 2RKYA 2WIIC 1Q3XA 1U5MA 1HFHA 3CALA 1VVCA 4B2SA 2KRIA 4J38B 2B5ID 3IX0A 3R62A 1SRZA 2RL0A 3ZD1A 5HYPA 2JRAA 2IZ3A 4KKDA 4A5WB 1QUBA 1OK3A 5HYUB 2ERJA 4ONTD 1TPGA 2RKZA 3ERBA 2A55A 4AYIA 3KZJA 4B2RA 4AYDA 1C1ZA 3KXVA 1MD7A 2LOJA 1E8BA 2V8EA 2UWNA 4JHSA 2XRBA 4F4OC 1OK1A 4LOSA 4DJZA 4AYEA 1O9AA 2XQWC 2O39C 2XRDA 2RLQA 3ZRZA 2MCZA 1HFIA 4PZ5A 1GPZA 1TPMA 3ZD2A 2XWBF 2CG6A 4LOTA 3GOVA 1NWVA 1OK9A 3MQLA 5HZPB 1GKGA 2YRAA 2W81A 4C16A 3EJHA 2EC3A
chains in the Genus database with same CATH superfamily
5FO8C 1CKLA 1SS2A 1RLHA 4K12A 2YBYA 4IGDA 2BZMA 1OJWA 3OXUD 3INBC 1MD8A 3VWOA 3WSYA 3M7PA 1H03P 2CG7A 1QGBA 3OP8A 1VVDA 2RLPA 1FBRA 1ZJKA 1E5GA 1G4GA 1PPQA 2KMSA 2JGWA 4ZH1D 2Y8RA 1LY2A 1H2QP 1Z92B 1GKNA 2G7IA 3FGRA 1GHQB 3NFPI 4MUCA 2MCYA 3GXEA 2EHFA 3OEDC 3RJ3D 4AYMA 3SW0X 4WJG2 1OJVA 4PO7A 5HYTB 5JPMG 4CSYA 1UOTP 1E88A 1G4FA 1H04P 4MSLA 5DN5A 4YIZA 4YNXA 2JGXA 2IZ4A 3T5OA 1H2PP 3L89M 1ELVA 3TVJA 2ZYCA 1TPNA 2XWJI 1HCCA 2QY0A 3O8EB 4FXGG 1OJYA 2CKUA 1OK2A 3IU3I 1QO6A 2W80A 5I0QB 2RKYA 2WIIC 1Q3XA 1U5MA 4APLA 1HFHA 3CALA 4N7EA 4BWCA 1VVCA 4B2SA 2KRIA 4J38B 2B5ID 3IX0A 3R62A 1SRZA 2RL0A 3ZD1A 5HYPA 2JRAA 2IZ3A 4KKDA 4A5WB 1QUBA 1OK3A 3ZLEA 2X2ZA 5HYUB 2ERJA 4ONTD 1TPGA 2RKZA 3ERBA 2A55A 4AYIA 3KZJA 4B2RA 4AYDA 3F6KA 1C1ZA 3KXVA 1MD7A 2I2LA 2LOJA 1E8BA 2V8EA 2UWNA 4JHSA 3ZLDA 3WSXA 2XRBA 4F4OC 1OK1A 4LOSA 4DJZA 4AYEA 1O9AA 2XQWC 2O39C 2XRDA 2RLQA 3ZRZA 2MCZA 1HFIA 3FGTA 4PZ5A 5DN4A 1GPZA 2Y8TA 1TPMA 3ZD2A 3NJAA 2XWBF 2CG6A 4LOTA 3K3TA 3CI0J 3GOVA 1NWVA 1OK9A 3MQLA 2Y8SA 5HZPB 1GKGA 2YRAA 2W81A 4C16A 3EJHA 2EC3A
chains in the Genus database with same CATH topology
5FO8C 1CKLA 1SS2A 4K12A 2YBYA 4IGDA 2BZMA 1OJWA 3OXUD 3INBC 1MD8A 3M7PA 1H03P 2CG7A 1QGBA 3OP8A 1VVDA 2RLPA 1FBRA 1ZJKA 1E5GA 1G4GA 1PPQA 2KMSA 2JGWA 4ZH1D 1LY2A 1H2QP 1Z92B 1GKNA 2G7IA 3NFPI 1GHQB 4MUCA 2MCYA 3GXEA 2EHFA 3OEDC 3RJ3D 4AYMA 3SW0X 4WJG2 1OJVA 5HYTB 5JPMG 4CSYA 1UOTP 1E88A 1G4FA 1H04P 4YNXA 2JGXA 2IZ4A 3T5OA 1H2PP 3L89M 1ELVA 3TVJA 1TPNA 2XWJI 1HCCA 2QY0A 3O8EB 4FXGG 1OJYA 2CKUA 1OK2A 3IU3I 1QO6A 2W80A 5I0QB 2RKYA 2WIIC 1Q3XA 1U5MA 1HFHA 3CALA 1VVCA 4B2SA 2KRIA 4J38B 2B5ID 3IX0A 3R62A 1SRZA 2RL0A 3ZD1A 5HYPA 2JRAA 2IZ3A 4KKDA 4A5WB 1QUBA 1OK3A 5HYUB 2ERJA 4ONTD 1TPGA 2RKZA 3ERBA 2A55A 4AYIA 3KZJA 4B2RA 4AYDA 1C1ZA 3KXVA 1MD7A 2LOJA 1E8BA 2V8EA 2UWNA 4JHSA 2XRBA 4F4OC 1OK1A 4LOSA 4DJZA 4AYEA 1O9AA 2XQWC 2O39C 2XRDA 2RLQA 3ZRZA 2MCZA 1HFIA 4PZ5A 1GPZA 1TPMA 3ZD2A 2XWBF 2CG6A 4LOTA 3GOVA 1NWVA 1OK9A 3MQLA 5HZPB 1GKGA 2YRAA 2W81A 4C16A 3EJHA 2EC3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5FO8 C;  1CKL A;  1SS2 A;  4K12 A;  2YBY A;  4IGD A;  2BZM A;  1OJW A;  3OXU D;  3INB C;  1MD8 A;  3M7P A;  1H03 P;  2CG7 A;  1QGB A;  3OP8 A;  1VVD A;  2RLP A;  1FBR A;  1ZJK A;  1E5G A;  1G4G A;  1PPQ A;  2KMS A;  2JGW A;  4ZH1 D;  1LY2 A;  1H2Q P;  1Z92 B;  1GKN A;  2G7I A;  3NFP I;  1GHQ B;  4MUC A;  2MCY A;  3GXE A;  2EHF A;  3OED C;  3RJ3 D;  4AYM A;  3SW0 X;  4WJG 2;  1OJV A;  5HYT B;  5JPM G;  4CSY A;  1UOT P;  1E88 A;  1G4F A;  1H04 P;  4YNX A;  2JGX A;  2IZ4 A;  3T5O A;  1H2P P;  3L89 M;  1ELV A;  3TVJ A;  1TPN A;  2XWJ I;  1HCC A;  2QY0 A;  3O8E B;  4FXG G;  1OJY A;  2CKU A;  1OK2 A;  3IU3 I;  1QO6 A;  2W80 A;  5I0Q B;  2RKY A;  2WII C;  1Q3X A;  1U5M A;  1HFH A;  3CAL A;  1VVC A;  4B2S A;  2KRI A;  4J38 B;  2B5I D;  3IX0 A;  3R62 A;  1SRZ A;  2RL0 A;  3ZD1 A;  5HYP A;  2JRA A;  2IZ3 A;  4KKD A;  4A5W B;  1QUB A;  1OK3 A;  5HYU B;  2ERJ A;  4ONT D;  1TPG A;  2RKZ A;  3ERB A;  2A55 A;  4AYI A;  3KZJ A;  4B2R A;  4AYD A;  1C1Z A;  3KXV A;  1MD7 A;  2LOJ A;  1E8B A;  2V8E A;  2UWN A;  4JHS A;  2XRB A;  4F4O C;  1OK1 A;  4LOS A;  4DJZ A;  4AYE A;  1O9A A;  2XQW C;  2O39 C;  2XRD A;  2RLQ A;  3ZRZ A;  2MCZ A;  1HFI A;  4PZ5 A;  1GPZ A;  1TPM A;  3ZD2 A;  2XWB F;  2CG6 A;  4LOT A;  3GOV A;  1NWV A;  1OK9 A;  3MQL A;  5HZP B;  1GKG A;  2YRA A;  2W81 A;  4C16 A;  3EJH A;  2EC3 A; 
#chains in the Genus database with same CATH topology
 5FO8 C;  1CKL A;  1SS2 A;  1RLH A;  4K12 A;  2YBY A;  4IGD A;  2BZM A;  1OJW A;  3OXU D;  3INB C;  1MD8 A;  3VWO A;  3WSY A;  3M7P A;  1H03 P;  2CG7 A;  1QGB A;  3OP8 A;  1VVD A;  2RLP A;  1FBR A;  1ZJK A;  1E5G A;  1G4G A;  1PPQ A;  2KMS A;  2JGW A;  4ZH1 D;  2Y8R A;  1LY2 A;  1H2Q P;  1Z92 B;  1GKN A;  2G7I A;  3FGR A;  1GHQ B;  3NFP I;  4MUC A;  2MCY A;  3GXE A;  2EHF A;  3OED C;  3RJ3 D;  4AYM A;  3SW0 X;  4WJG 2;  1OJV A;  4PO7 A;  5HYT B;  5JPM G;  4CSY A;  1UOT P;  1E88 A;  1G4F A;  1H04 P;  4MSL A;  5DN5 A;  4YIZ A;  4YNX A;  2JGX A;  2IZ4 A;  3T5O A;  1H2P P;  3L89 M;  1ELV A;  3TVJ A;  2ZYC A;  1TPN A;  2XWJ I;  1HCC A;  2QY0 A;  3O8E B;  4FXG G;  1OJY A;  2CKU A;  1OK2 A;  3IU3 I;  1QO6 A;  2W80 A;  5I0Q B;  2RKY A;  2WII C;  1Q3X A;  1U5M A;  4APL A;  1HFH A;  3CAL A;  4N7E A;  4BWC A;  1VVC A;  4B2S A;  2KRI A;  4J38 B;  2B5I D;  3IX0 A;  3R62 A;  1SRZ A;  2RL0 A;  3ZD1 A;  5HYP A;  2JRA A;  2IZ3 A;  4KKD A;  4A5W B;  1QUB A;  1OK3 A;  3ZLE A;  2X2Z A;  5HYU B;  2ERJ A;  4ONT D;  1TPG A;  2RKZ A;  3ERB A;  2A55 A;  4AYI A;  3KZJ A;  4B2R A;  4AYD A;  3F6K A;  1C1Z A;  3KXV A;  1MD7 A;  2I2L A;  2LOJ A;  1E8B A;  2V8E A;  2UWN A;  4JHS A;  3ZLD A;  3WSX A;  2XRB A;  4F4O C;  1OK1 A;  4LOS A;  4DJZ A;  4AYE A;  1O9A A;  2XQW C;  2O39 C;  2XRD A;  2RLQ A;  3ZRZ A;  2MCZ A;  1HFI A;  3FGT A;  4PZ5 A;  5DN4 A;  1GPZ A;  2Y8T A;  1TPM A;  3ZD2 A;  3NJA A;  2XWB F;  2CG6 A;  4LOT A;  3K3T A;  3CI0 J;  3GOV A;  1NWV A;  1OK9 A;  3MQL A;  2Y8S A;  5HZP B;  1GKG A;  2YRA A;  2W81 A;  4C16 A;  3EJH A;  2EC3 A; 
#chains in the Genus database with same CATH homology
 5FO8 C;  1CKL A;  1SS2 A;  4K12 A;  2YBY A;  4IGD A;  2BZM A;  1OJW A;  3OXU D;  3INB C;  1MD8 A;  3M7P A;  1H03 P;  2CG7 A;  1QGB A;  3OP8 A;  1VVD A;  2RLP A;  1FBR A;  1ZJK A;  1E5G A;  1G4G A;  1PPQ A;  2KMS A;  2JGW A;  4ZH1 D;  1LY2 A;  1H2Q P;  1Z92 B;  1GKN A;  2G7I A;  3NFP I;  1GHQ B;  4MUC A;  2MCY A;  3GXE A;  2EHF A;  3OED C;  3RJ3 D;  4AYM A;  3SW0 X;  4WJG 2;  1OJV A;  5HYT B;  5JPM G;  4CSY A;  1UOT P;  1E88 A;  1G4F A;  1H04 P;  4YNX A;  2JGX A;  2IZ4 A;  3T5O A;  1H2P P;  3L89 M;  1ELV A;  3TVJ A;  1TPN A;  2XWJ I;  1HCC A;  2QY0 A;  3O8E B;  4FXG G;  1OJY A;  2CKU A;  1OK2 A;  3IU3 I;  1QO6 A;  2W80 A;  5I0Q B;  2RKY A;  2WII C;  1Q3X A;  1U5M A;  1HFH A;  3CAL A;  1VVC A;  4B2S A;  2KRI A;  4J38 B;  2B5I D;  3IX0 A;  3R62 A;  1SRZ A;  2RL0 A;  3ZD1 A;  5HYP A;  2JRA A;  2IZ3 A;  4KKD A;  4A5W B;  1QUB A;  1OK3 A;  5HYU B;  2ERJ A;  4ONT D;  1TPG A;  2RKZ A;  3ERB A;  2A55 A;  4AYI A;  3KZJ A;  4B2R A;  4AYD A;  1C1Z A;  3KXV A;  1MD7 A;  2LOJ A;  1E8B A;  2V8E A;  2UWN A;  4JHS A;  2XRB A;  4F4O C;  1OK1 A;  4LOS A;  4DJZ A;  4AYE A;  1O9A A;  2XQW C;  2O39 C;  2XRD A;  2RLQ A;  3ZRZ A;  2MCZ A;  1HFI A;  4PZ5 A;  1GPZ A;  1TPM A;  3ZD2 A;  2XWB F;  2CG6 A;  4LOT A;  3GOV A;  1NWV A;  1OK9 A;  3MQL A;  5HZP B;  1GKG A;  2YRA A;  2W81 A;  4C16 A;  3EJH A;  2EC3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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