3ZLDA

Crystal structure of toxoplasma gondii sporozoite ama1 in complex with a 36 aa region of sporozoite ron2
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
381
structure length
363
Chain Sequence
GQNPWATTTAFADFMKRFNIPQVHGSGIFVDLGRDTEGYREVGGKCPVFGKAIQMHQPAEYSNNFLDDAPTSNDASKKPLPGGFNNPQVYTSGQKFSPIDDSLLQERLGTAGPKTAIGRCALYAYSTIAVNPSTNYTSTYKYPFVYDAVSRKCYVLSVSAQLLKGEKYCSVNGTPSGLTWACFEPVKEKSSARALVYGSAFVAEGNPDAWQSACPNDAVKDALFGKWEDGQCVPFDTKTSVQSDQATNKEECWKRVFANPLVASDAPTTSSPKSGGFGANWANFYLEKESGETICAIFDQVPDCFAPITGAVAYTALGSSTEVNLPQCDSASFIPIEGPCNNCVQVVTECVGNQFDQTSKACC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Toxoplasma Gondii Sporozoites Invade Host Cells Using Two Novel Paralogs of Ron2 and Ama1
pubmed doi rcsb
molecule tags Membrane protein
source organism Toxoplasma gondii
molecule keywords APICAL MEMBRANE ANTIGEN 1
total genus 84
structure length 363
sequence length 381
ec nomenclature
pdb deposition date 2013-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02430 AMA-1 Apical membrane antigen 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.70 Mainly Beta Ribbon Complement Module; domain 1 Complement Module; domain 1 3zldA03
4YIZA 4APLA 3ZLEA 2Y8RA 2Y8TA 2Y8SA 3ZLDA 2X2ZA
chains in the Genus database with same CATH superfamily
1G4FA 2O39C 4WJG2 3F6KA 3TVJA 3NJAA 1GPZA 1H04P 3GOVA 3T5OA 3OP8A 1MD7A 3GXEA 3ZLDA 1CKLA 2JGXA 4J38B 2CG6A 2KMSA 1SS2A 1TPNA 4ONTD 1OJVA 3IU3I 1LY2A 1G4GA 4YIZA 4KKDA 5HZPB 1Q3XA 4AYDA 1FBRA 1E8BA 2ERJA 1SRZA 2XWBF 2RKZA 3CALA 5FO8C 1TPGA 3OEDC 3RJ3D 1GKNA 2MCZA 4B2RA 1OK3A 1MD8A 1VVCA 2JRAA 4LOSA 4N7EA 4PZ5A 3ZD1A 4ZH1D 4BWCA 4YNXA 2XWJI 3ZD2A 3ZRZA 2YBYA 1ELVA 2A55A 2XRDA 2Y8TA 2XQWC 3KZJA 1U5MA 3SW0X 2I2LA 4IGDA 4AYMA 2LOJA 1OJYA 5JPMG 1OK9A 2ZYCA 1OK2A 2XRBA 1HFHA 5HYTB 4C16A 4CSYA 2IZ3A 4A5WB 1H2PP 5HYUB 1OJWA 1VVDA 1TPMA 1HCCA 1HFIA 4LOTA 4APLA 3ERBA 5HYPA 1QO6A 3WSYA 2W80A 2RLPA 5I0QB 2BZMA 2KRIA 3CI0J 2RKYA 4MSLA 1RLHA 2CKUA 3NFPI 2CG7A 3EJHA 4F4OC 2EHFA 1GKGA 2B5ID 2EC3A 1E88A 1O9AA 3MQLA 2RLQA 1H03P 1GHQB 2YRAA 2X2ZA 4DJZA 4K12A 2IZ4A 2Y8SA 3ZLEA 4FXGG 4AYEA 2QY0A 3VWOA 1E5GA 4AYIA 3WSXA 2G7IA 2UWNA 1Z92B 2V8EA 1PPQA 3OXUD 1QUBA 3FGRA 4B2SA 2W81A 4MUCA 1NWVA 3IX0A 4PO7A 1OK1A 2MCYA 3M7PA 1QGBA 3INBC 3FGTA 2WIIC 3L89M 1H2QP 2JGWA 1C1ZA 2RL0A 4JHSA 1ZJKA 5DN5A 3K3TA 3KXVA 3R62A 5DN4A 2Y8RA 3O8EB 1UOTP
chains in the Genus database with same CATH topology
4APLA 3F6KA 4N7EA 3WSYA 3NJAA 4BWCA 4MSLA 3ZLDA 3WSXA 2Y8TA 3FGRA 4PO7A 4YIZA 2I2LA 3FGTA 2X2ZA 2Y8RA 2Y8SA 3ZLEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4YIZ A;  4APL A;  3ZLE A;  2Y8R A;  2Y8T A;  2Y8S A;  3ZLD A;  2X2Z A; 
#chains in the Genus database with same CATH topology
 1G4F A;  2O39 C;  4WJG 2;  3F6K A;  3TVJ A;  3NJA A;  1GPZ A;  1H04 P;  3GOV A;  3T5O A;  3OP8 A;  1MD7 A;  3GXE A;  3ZLD A;  1CKL A;  2JGX A;  4J38 B;  2CG6 A;  2KMS A;  1SS2 A;  1TPN A;  4ONT D;  1OJV A;  3IU3 I;  1LY2 A;  1G4G A;  4YIZ A;  4KKD A;  5HZP B;  1Q3X A;  4AYD A;  1FBR A;  1E8B A;  2ERJ A;  1SRZ A;  2XWB F;  2RKZ A;  3CAL A;  5FO8 C;  1TPG A;  3OED C;  3RJ3 D;  1GKN A;  2MCZ A;  4B2R A;  1OK3 A;  1MD8 A;  1VVC A;  2JRA A;  4LOS A;  4N7E A;  4PZ5 A;  3ZD1 A;  4ZH1 D;  4BWC A;  4YNX A;  2XWJ I;  3ZD2 A;  3ZRZ A;  2YBY A;  1ELV A;  2A55 A;  2XRD A;  2Y8T A;  2XQW C;  3KZJ A;  1U5M A;  3SW0 X;  2I2L A;  4IGD A;  4AYM A;  2LOJ A;  1OJY A;  5JPM G;  1OK9 A;  2ZYC A;  1OK2 A;  2XRB A;  1HFH A;  5HYT B;  4C16 A;  4CSY A;  2IZ3 A;  4A5W B;  1H2P P;  5HYU B;  1OJW A;  1VVD A;  1TPM A;  1HCC A;  1HFI A;  4LOT A;  4APL A;  3ERB A;  5HYP A;  1QO6 A;  3WSY A;  2W80 A;  2RLP A;  5I0Q B;  2BZM A;  2KRI A;  3CI0 J;  2RKY A;  4MSL A;  1RLH A;  2CKU A;  3NFP I;  2CG7 A;  3EJH A;  4F4O C;  2EHF A;  1GKG A;  2B5I D;  2EC3 A;  1E88 A;  1O9A A;  3MQL A;  2RLQ A;  1H03 P;  1GHQ B;  2YRA A;  2X2Z A;  4DJZ A;  4K12 A;  2IZ4 A;  2Y8S A;  3ZLE A;  4FXG G;  4AYE A;  2QY0 A;  3VWO A;  1E5G A;  4AYI A;  3WSX A;  2G7I A;  2UWN A;  1Z92 B;  2V8E A;  1PPQ A;  3OXU D;  1QUB A;  3FGR A;  4B2S A;  2W81 A;  4MUC A;  1NWV A;  3IX0 A;  4PO7 A;  1OK1 A;  2MCY A;  3M7P A;  1QGB A;  3INB C;  3FGT A;  2WII C;  3L89 M;  1H2Q P;  2JGW A;  1C1Z A;  2RL0 A;  4JHS A;  1ZJK A;  5DN5 A;  3K3T A;  3KXV A;  3R62 A;  5DN4 A;  2Y8R A;  3O8E B;  1UOT P; 
#chains in the Genus database with same CATH homology
 4APL A;  3F6K A;  4N7E A;  3WSY A;  3NJA A;  4BWC A;  4MSL A;  3ZLD A;  3WSX A;  2Y8T A;  3FGR A;  4PO7 A;  4YIZ A;  2I2L A;  3FGT A;  2X2Z A;  2Y8R A;  2Y8S A;  3ZLE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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