3ZRZA

Crystal structure of the second and third fibronectin f1 modules in complex with a fragment of streptococcus pyogenes sfbi-5
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
89
structure length
89
Chain Sequence
EETCFDKYTGNTYRVGDTYERPKDSMIWDCTCIGAGRGRISCTIANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Analysis of the Tandem Beta-Zipper Interaction of a Streptococcal Protein with Human Fibronectin.
pubmed doi rcsb
molecule tags Cell adhesion
source organism Homo sapiens
molecule keywords FIBRONECTIN
total genus 18
structure length 89
sequence length 89
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-06-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3zrzA01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 3zrzA02
2XRBA 1VVDA 2KMSA 3KZJA 1QO6A 5HYUB 1H03P 4LOSA 2RL0A 3RJ3D 1NWVA 5HYTB 2G7IA 3INBC 4YNXA 2KRIA 4WJG2 2ERJA 3T5OA 1Q3XA 2JRAA 1PPQA 3IX0A 3OEDC 1OJVA 1SRZA 4LOTA 2JGWA 2A55A 2MCYA 5I0QB 1FBRA 4PZ5A 1ELVA 2WIIC 5HZPB 3L89M 1SS2A 1E88A 3CALA 2XQWC 1OJWA 4FXGG 3M7PA 1VVCA 3NFPI 4ONTD 2W81A 4AYEA 3IU3I 1TPMA 1HCCA 4CSYA 1UOTP 2B5ID 4DJZA 2MCZA 3OXUD 3ZRZA 2BZMA 1H2QP 4J38B 4AYMA 3MQLA 4B2SA 1E5GA 1QGBA 4MUCA 1HFHA 4ZH1D 4B2RA 2XWJI 4AYIA 3ZD1A 2IZ3A 2UWNA 1E8BA 1OJYA 4F4OC 2W80A 1GHQB 2V8EA 5JPMG 2EHFA 4JHSA 2YBYA 3ERBA 2EC3A 2RLPA 2LOJA 2YRAA 1MD7A 1OK3A 1MD8A 2CG6A 3SW0X 4KKDA 1TPGA 2XRDA 1U5MA 1OK2A 3R62A 5HYPA 2XWBF 1GPZA 3OP8A 1ZJKA 1Z92B 4C16A 3GOVA 1LY2A 3O8EB 3KXVA 3ZD2A 3TVJA 3EJHA 1QUBA 1H2PP 2CKUA 4AYDA 1OK9A 5FO8C 1GKNA 1TPNA 2JGXA 2O39C 4K12A 1G4GA 1GKGA 2RLQA 1H04P 4IGDA 2CG7A 2IZ4A 1G4FA 2RKYA 3GXEA 1HFIA 1OK1A 1C1ZA 2QY0A 2RKZA 4A5WB 1O9AA 1CKLA
chains in the Genus database with same CATH superfamily
3K3TA 2XRBA 1VVDA 2KMSA 3KZJA 1QO6A 5HYUB 1H03P 4LOSA 2RL0A 3RJ3D 1NWVA 5HYTB 2G7IA 3INBC 3FGTA 2Y8RA 4YNXA 2KRIA 4WJG2 2ERJA 3T5OA 1Q3XA 2JRAA 1PPQA 5DN5A 3IX0A 3OEDC 1OJVA 1SRZA 4LOTA 2JGWA 2A55A 2MCYA 5I0QB 1FBRA 4PZ5A 1ELVA 3CI0J 2WIIC 5HZPB 3L89M 1SS2A 1E88A 3CALA 1RLHA 2XQWC 1OJWA 2X2ZA 4FXGG 3ZLDA 4N7EA 3M7PA 1VVCA 3NFPI 4ONTD 2Y8SA 2W81A 4A5WB 4AYEA 3IU3I 2I2LA 1TPMA 1HCCA 4CSYA 1UOTP 2B5ID 4DJZA 2MCZA 3OXUD 3ZRZA 2BZMA 1H2QP 4J38B 4AYMA 3MQLA 4B2SA 1E5GA 1QGBA 4MUCA 1HFHA 4ZH1D 4B2RA 2XWJI 4AYIA 3ZD1A 2IZ3A 2UWNA 1E8BA 1OJYA 4F4OC 2W80A 1GHQB 2V8EA 5JPMG 2EHFA 5DN4A 4JHSA 4MSLA 4YIZA 2YBYA 3F6KA 3ERBA 2EC3A 2RLPA 2LOJA 2YRAA 1MD7A 1OK3A 1MD8A 2CG6A 3SW0X 4KKDA 1TPGA 3VWOA 2XRDA 1U5MA 1OK2A 3R62A 5HYPA 2XWBF 1GPZA 3NJAA 3OP8A 1ZJKA 2Y8TA 2ZYCA 3ZLEA 1Z92B 4BWCA 4C16A 3GOVA 1LY2A 3O8EB 3KXVA 3WSXA 3ZD2A 3TVJA 3EJHA 1QUBA 1H2PP 2CKUA 4PO7A 1OK9A 5FO8C 4AYDA 1GKNA 1TPNA 2JGXA 2O39C 4K12A 1G4GA 1GKGA 2RLQA 1H04P 4IGDA 2CG7A 2IZ4A 1G4FA 4APLA 2RKYA 3GXEA 1HFIA 3WSYA 1OK1A 1C1ZA 2QY0A 2RKZA 3FGRA 1O9AA 1CKLA
chains in the Genus database with same CATH topology
2XRBA 1VVDA 2KMSA 3KZJA 1QO6A 5HYUB 1H03P 4LOSA 2RL0A 3RJ3D 1NWVA 5HYTB 2G7IA 3INBC 4YNXA 2KRIA 4WJG2 2ERJA 3T5OA 1Q3XA 2JRAA 1PPQA 3IX0A 3OEDC 1OJVA 1SRZA 4LOTA 2JGWA 2A55A 2MCYA 5I0QB 1FBRA 4PZ5A 1ELVA 2WIIC 5HZPB 3L89M 1SS2A 1E88A 3CALA 2XQWC 1OJWA 4FXGG 3M7PA 1VVCA 3NFPI 4ONTD 2W81A 4AYEA 3IU3I 1TPMA 1HCCA 4CSYA 1UOTP 2B5ID 4DJZA 2MCZA 3OXUD 3ZRZA 2BZMA 1H2QP 4J38B 4AYMA 3MQLA 4B2SA 1E5GA 1QGBA 4MUCA 1HFHA 4ZH1D 4B2RA 2XWJI 4AYIA 3ZD1A 2IZ3A 2UWNA 1E8BA 1OJYA 4F4OC 2W80A 1GHQB 2V8EA 5JPMG 2EHFA 4JHSA 2YBYA 3ERBA 2EC3A 2RLPA 2LOJA 2YRAA 1MD7A 1OK3A 1MD8A 2CG6A 3SW0X 4KKDA 1TPGA 2XRDA 1U5MA 1OK2A 3R62A 5HYPA 2XWBF 1GPZA 3OP8A 1ZJKA 1Z92B 4C16A 3GOVA 1LY2A 3O8EB 3KXVA 3ZD2A 3TVJA 3EJHA 1QUBA 1H2PP 2CKUA 4AYDA 1OK9A 5FO8C 1GKNA 1TPNA 2JGXA 2O39C 4K12A 1G4GA 1GKGA 2RLQA 1H04P 4IGDA 2CG7A 2IZ4A 1G4FA 2RKYA 3GXEA 1HFIA 1OK1A 1C1ZA 2QY0A 2RKZA 4A5WB 1O9AA 1CKLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XRB A;  1VVD A;  2KMS A;  3KZJ A;  1QO6 A;  5HYU B;  1H03 P;  4LOS A;  2RL0 A;  3RJ3 D;  1NWV A;  5HYT B;  2G7I A;  3INB C;  4YNX A;  2KRI A;  4WJG 2;  2ERJ A;  3T5O A;  1Q3X A;  2JRA A;  1PPQ A;  3IX0 A;  3OED C;  1OJV A;  1SRZ A;  4LOT A;  2JGW A;  2A55 A;  2MCY A;  5I0Q B;  1FBR A;  4PZ5 A;  1ELV A;  2WII C;  5HZP B;  3L89 M;  1SS2 A;  1E88 A;  3CAL A;  2XQW C;  1OJW A;  4FXG G;  3M7P A;  1VVC A;  3NFP I;  4ONT D;  2W81 A;  4AYE A;  3IU3 I;  1TPM A;  1HCC A;  4CSY A;  1UOT P;  2B5I D;  4DJZ A;  2MCZ A;  3OXU D;  3ZRZ A;  2BZM A;  1H2Q P;  4J38 B;  4AYM A;  3MQL A;  4B2S A;  1E5G A;  1QGB A;  4MUC A;  1HFH A;  4ZH1 D;  4B2R A;  2XWJ I;  4AYI A;  3ZD1 A;  2IZ3 A;  2UWN A;  1E8B A;  1OJY A;  4F4O C;  2W80 A;  1GHQ B;  2V8E A;  5JPM G;  2EHF A;  4JHS A;  2YBY A;  3ERB A;  2EC3 A;  2RLP A;  2LOJ A;  2YRA A;  1MD7 A;  1OK3 A;  1MD8 A;  2CG6 A;  3SW0 X;  4KKD A;  1TPG A;  2XRD A;  1U5M A;  1OK2 A;  3R62 A;  5HYP A;  2XWB F;  1GPZ A;  3OP8 A;  1ZJK A;  1Z92 B;  4C16 A;  3GOV A;  1LY2 A;  3O8E B;  3KXV A;  3ZD2 A;  3TVJ A;  3EJH A;  1QUB A;  1H2P P;  2CKU A;  4AYD A;  1OK9 A;  5FO8 C;  1GKN A;  1TPN A;  2JGX A;  2O39 C;  4K12 A;  1G4G A;  1GKG A;  2RLQ A;  1H04 P;  4IGD A;  2CG7 A;  2IZ4 A;  1G4F A;  2RKY A;  3GXE A;  1HFI A;  1OK1 A;  1C1Z A;  2QY0 A;  2RKZ A;  4A5W B;  1O9A A;  1CKL A; 
#chains in the Genus database with same CATH topology
 3K3T A;  2XRB A;  1VVD A;  2KMS A;  3KZJ A;  1QO6 A;  5HYU B;  1H03 P;  4LOS A;  2RL0 A;  3RJ3 D;  1NWV A;  5HYT B;  2G7I A;  3INB C;  3FGT A;  2Y8R A;  4YNX A;  2KRI A;  4WJG 2;  2ERJ A;  3T5O A;  1Q3X A;  2JRA A;  1PPQ A;  5DN5 A;  3IX0 A;  3OED C;  1OJV A;  1SRZ A;  4LOT A;  2JGW A;  2A55 A;  2MCY A;  5I0Q B;  1FBR A;  4PZ5 A;  1ELV A;  3CI0 J;  2WII C;  5HZP B;  3L89 M;  1SS2 A;  1E88 A;  3CAL A;  1RLH A;  2XQW C;  1OJW A;  2X2Z A;  4FXG G;  3ZLD A;  4N7E A;  3M7P A;  1VVC A;  3NFP I;  4ONT D;  2Y8S A;  2W81 A;  4A5W B;  4AYE A;  3IU3 I;  2I2L A;  1TPM A;  1HCC A;  4CSY A;  1UOT P;  2B5I D;  4DJZ A;  2MCZ A;  3OXU D;  3ZRZ A;  2BZM A;  1H2Q P;  4J38 B;  4AYM A;  3MQL A;  4B2S A;  1E5G A;  1QGB A;  4MUC A;  1HFH A;  4ZH1 D;  4B2R A;  2XWJ I;  4AYI A;  3ZD1 A;  2IZ3 A;  2UWN A;  1E8B A;  1OJY A;  4F4O C;  2W80 A;  1GHQ B;  2V8E A;  5JPM G;  2EHF A;  5DN4 A;  4JHS A;  4MSL A;  4YIZ A;  2YBY A;  3F6K A;  3ERB A;  2EC3 A;  2RLP A;  2LOJ A;  2YRA A;  1MD7 A;  1OK3 A;  1MD8 A;  2CG6 A;  3SW0 X;  4KKD A;  1TPG A;  3VWO A;  2XRD A;  1U5M A;  1OK2 A;  3R62 A;  5HYP A;  2XWB F;  1GPZ A;  3NJA A;  3OP8 A;  1ZJK A;  2Y8T A;  2ZYC A;  3ZLE A;  1Z92 B;  4BWC A;  4C16 A;  3GOV A;  1LY2 A;  3O8E B;  3KXV A;  3WSX A;  3ZD2 A;  3TVJ A;  3EJH A;  1QUB A;  1H2P P;  2CKU A;  4PO7 A;  1OK9 A;  5FO8 C;  4AYD A;  1GKN A;  1TPN A;  2JGX A;  2O39 C;  4K12 A;  1G4G A;  1GKG A;  2RLQ A;  1H04 P;  4IGD A;  2CG7 A;  2IZ4 A;  1G4F A;  4APL A;  2RKY A;  3GXE A;  1HFI A;  3WSY A;  1OK1 A;  1C1Z A;  2QY0 A;  2RKZ A;  3FGR A;  1O9A A;  1CKL A; 
#chains in the Genus database with same CATH homology
 2XRB A;  1VVD A;  2KMS A;  3KZJ A;  1QO6 A;  5HYU B;  1H03 P;  4LOS A;  2RL0 A;  3RJ3 D;  1NWV A;  5HYT B;  2G7I A;  3INB C;  4YNX A;  2KRI A;  4WJG 2;  2ERJ A;  3T5O A;  1Q3X A;  2JRA A;  1PPQ A;  3IX0 A;  3OED C;  1OJV A;  1SRZ A;  4LOT A;  2JGW A;  2A55 A;  2MCY A;  5I0Q B;  1FBR A;  4PZ5 A;  1ELV A;  2WII C;  5HZP B;  3L89 M;  1SS2 A;  1E88 A;  3CAL A;  2XQW C;  1OJW A;  4FXG G;  3M7P A;  1VVC A;  3NFP I;  4ONT D;  2W81 A;  4AYE A;  3IU3 I;  1TPM A;  1HCC A;  4CSY A;  1UOT P;  2B5I D;  4DJZ A;  2MCZ A;  3OXU D;  3ZRZ A;  2BZM A;  1H2Q P;  4J38 B;  4AYM A;  3MQL A;  4B2S A;  1E5G A;  1QGB A;  4MUC A;  1HFH A;  4ZH1 D;  4B2R A;  2XWJ I;  4AYI A;  3ZD1 A;  2IZ3 A;  2UWN A;  1E8B A;  1OJY A;  4F4O C;  2W80 A;  1GHQ B;  2V8E A;  5JPM G;  2EHF A;  4JHS A;  2YBY A;  3ERB A;  2EC3 A;  2RLP A;  2LOJ A;  2YRA A;  1MD7 A;  1OK3 A;  1MD8 A;  2CG6 A;  3SW0 X;  4KKD A;  1TPG A;  2XRD A;  1U5M A;  1OK2 A;  3R62 A;  5HYP A;  2XWB F;  1GPZ A;  3OP8 A;  1ZJK A;  1Z92 B;  4C16 A;  3GOV A;  1LY2 A;  3O8E B;  3KXV A;  3ZD2 A;  3TVJ A;  3EJH A;  1QUB A;  1H2P P;  2CKU A;  4AYD A;  1OK9 A;  5FO8 C;  1GKN A;  1TPN A;  2JGX A;  2O39 C;  4K12 A;  1G4G A;  1GKG A;  2RLQ A;  1H04 P;  4IGD A;  2CG7 A;  2IZ4 A;  1G4F A;  2RKY A;  3GXE A;  1HFI A;  1OK1 A;  1C1Z A;  2QY0 A;  2RKZ A;  4A5W B;  1O9A A;  1CKL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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