4ONTD

Ternary host recognition complex of complement factor h, c3d, and sialic acid
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
126
structure length
126
Chain Sequence
FGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCRNGQWSEPPKCLHPCVISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLEYPTCAKR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
O5 (108-165)EMPTYUpdating...
connected with : NaN
molecule tags Immune system
source organism Homo sapiens
publication title Structural basis for sialic acid-mediated self-recognition by complement factor H.
pubmed doi rcsb
molecule keywords Complement factor H
total genus 22
structure length 126
sequence length 126
chains with identical sequence E, F
ec nomenclature
pdb deposition date 2014-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00084 Sushi Sushi repeat (SCR repeat)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 4ontD01
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 4ontD02
5HYUB 2JGWA 1SRZA 2QY0A 1H03P 2ERJA 2BZMA 2CKUA 3SW0X 1FBRA 3MQLA 2XQWC 2MCYA 2UWNA 3ZD2A 3L89M 1OJYA 4FXGG 2RLPA 4DJZA 1VVCA 5FO8C 3GXEA 3KZJA 4K12A 2XWBF 4C16A 3M7PA 1H2PP 1VVDA 4JHSA 1C1ZA 3OXUD 1GPZA 1HFHA 3ZD1A 1G4FA 3T5OA 3ERBA 1OK1A 3RJ3D 3CALA 4ZH1D 1E88A 2LOJA 2WIIC 3OEDC 1H2QP 4MUCA 2RLQA 4IGDA 1MD7A 4AYDA 3IX0A 1NWVA 4B2RA 3OP8A 1GKGA 5JPMG 1OK3A 3ZRZA 1OJWA 1E5GA 4J38B 2JRAA 2RL0A 2YRAA 5I0QB 2CG6A 1U5MA 4LOTA 1GHQB 2XRBA 1GKNA 2W80A 1Z92B 2JGXA 1ZJKA 2EC3A 4PZ5A 2EHFA 3R62A 2KRIA 4F4OC 1E8BA 2XWJI 4WJG2 1OK9A 3EJHA 2A55A 2RKZA 5HYTB 3TVJA 1ELVA 2RKYA 2IZ3A 2V8EA 1CKLA 1O9AA 1LY2A 1PPQA 2W81A 4LOSA 3INBC 1OK2A 1H04P 1SS2A 1TPGA 1UOTP 4KKDA 4AYMA 1HCCA 2B5ID 1QGBA 2IZ4A 3KXVA 1TPMA 2G7IA 1HFIA 1Q3XA 1QO6A 1OJVA 4AYIA 3GOVA 5HYPA 1TPNA 2O39C 3IU3I 1MD8A 1QUBA 2CG7A 5HZPB 3NFPI 4ONTD 3O8EB 1G4GA 2XRDA 2YBYA 4A5WB 4B2SA 4CSYA 2KMSA 4AYEA 2MCZA 4YNXA
chains in the Genus database with same CATH superfamily
5HYUB 2JGWA 2Y8SA 1SRZA 2QY0A 1H03P 2ERJA 1RLHA 2BZMA 2CKUA 3SW0X 1FBRA 3MQLA 2XQWC 4MSLA 2MCYA 2UWNA 3ZD2A 3L89M 3FGRA 1OJYA 3WSYA 4FXGG 2RLPA 4DJZA 1VVCA 5FO8C 3GXEA 3KZJA 4K12A 2XWBF 4C16A 3M7PA 1H2PP 3VWOA 1VVDA 4JHSA 1C1ZA 4BWCA 3OXUD 3F6KA 1GPZA 3ZLDA 1HFHA 3ZD1A 1G4FA 4N7EA 3T5OA 3ERBA 1OK1A 3RJ3D 3CI0J 3CALA 4ZH1D 1E88A 2LOJA 2WIIC 3OEDC 1H2QP 4MUCA 2RLQA 4IGDA 1MD7A 2Y8TA 4AYDA 2ZYCA 3IX0A 1NWVA 4B2RA 3OP8A 5DN4A 1GKGA 5JPMG 1OK3A 3ZRZA 4APLA 1OJWA 1E5GA 4J38B 2JRAA 2RL0A 2YRAA 5I0QB 2CG6A 1U5MA 4LOTA 1GHQB 2XRBA 1GKNA 3FGTA 2W80A 1Z92B 2JGXA 1ZJKA 2EC3A 2X2ZA 4PZ5A 2EHFA 3R62A 2KRIA 4F4OC 1E8BA 2XWJI 4WJG2 1OK9A 3EJHA 2A55A 2RKZA 5HYTB 3TVJA 1ELVA 2RKYA 3WSXA 2IZ3A 2V8EA 1CKLA 4PO7A 1O9AA 1LY2A 1PPQA 3ZLEA 5DN5A 3NJAA 2W81A 4LOSA 3INBC 1OK2A 1H04P 1SS2A 1TPGA 1UOTP 4KKDA 4AYMA 1HCCA 2B5ID 1QGBA 2IZ4A 3KXVA 1TPMA 2G7IA 1HFIA 1Q3XA 1QO6A 4YIZA 1OJVA 4AYIA 3GOVA 5HYPA 1TPNA 2O39C 3IU3I 1MD8A 1QUBA 2CG7A 5HZPB 3K3TA 3NFPI 4ONTD 3O8EB 1G4GA 2XRDA 2YBYA 2Y8RA 4A5WB 4B2SA 4CSYA 2I2LA 2KMSA 4AYEA 2MCZA 4YNXA
chains in the Genus database with same CATH topology
5HYUB 2JGWA 1SRZA 2QY0A 1H03P 2ERJA 2BZMA 2CKUA 3SW0X 1FBRA 3MQLA 2XQWC 2MCYA 2UWNA 3ZD2A 3L89M 1OJYA 4FXGG 2RLPA 4DJZA 1VVCA 5FO8C 3GXEA 3KZJA 4K12A 2XWBF 4C16A 3M7PA 1H2PP 1VVDA 4JHSA 1C1ZA 3OXUD 1GPZA 1HFHA 3ZD1A 1G4FA 3T5OA 3ERBA 1OK1A 3RJ3D 3CALA 4ZH1D 1E88A 2LOJA 2WIIC 3OEDC 1H2QP 4MUCA 2RLQA 4IGDA 1MD7A 4AYDA 3IX0A 1NWVA 4B2RA 3OP8A 1GKGA 5JPMG 1OK3A 3ZRZA 1OJWA 1E5GA 4J38B 2JRAA 2RL0A 2YRAA 5I0QB 2CG6A 1U5MA 4LOTA 1GHQB 2XRBA 1GKNA 2W80A 1Z92B 2JGXA 1ZJKA 2EC3A 4PZ5A 2EHFA 3R62A 2KRIA 4F4OC 1E8BA 2XWJI 4WJG2 1OK9A 3EJHA 2A55A 2RKZA 5HYTB 3TVJA 1ELVA 2RKYA 2IZ3A 2V8EA 1CKLA 1O9AA 1LY2A 1PPQA 2W81A 4LOSA 3INBC 1OK2A 1H04P 1SS2A 1TPGA 1UOTP 4KKDA 4AYMA 1HCCA 2B5ID 1QGBA 2IZ4A 3KXVA 1TPMA 2G7IA 1HFIA 1Q3XA 1QO6A 1OJVA 4AYIA 3GOVA 5HYPA 1TPNA 2O39C 3IU3I 1MD8A 1QUBA 2CG7A 5HZPB 3NFPI 4ONTD 3O8EB 1G4GA 2XRDA 2YBYA 4A5WB 4B2SA 4CSYA 2KMSA 4AYEA 2MCZA 4YNXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HYU B;  2JGW A;  1SRZ A;  2QY0 A;  1H03 P;  2ERJ A;  2BZM A;  2CKU A;  3SW0 X;  1FBR A;  3MQL A;  2XQW C;  2MCY A;  2UWN A;  3ZD2 A;  3L89 M;  1OJY A;  4FXG G;  2RLP A;  4DJZ A;  1VVC A;  5FO8 C;  3GXE A;  3KZJ A;  4K12 A;  2XWB F;  4C16 A;  3M7P A;  1H2P P;  1VVD A;  4JHS A;  1C1Z A;  3OXU D;  1GPZ A;  1HFH A;  3ZD1 A;  1G4F A;  3T5O A;  3ERB A;  1OK1 A;  3RJ3 D;  3CAL A;  4ZH1 D;  1E88 A;  2LOJ A;  2WII C;  3OED C;  1H2Q P;  4MUC A;  2RLQ A;  4IGD A;  1MD7 A;  4AYD A;  3IX0 A;  1NWV A;  4B2R A;  3OP8 A;  1GKG A;  5JPM G;  1OK3 A;  3ZRZ A;  1OJW A;  1E5G A;  4J38 B;  2JRA A;  2RL0 A;  2YRA A;  5I0Q B;  2CG6 A;  1U5M A;  4LOT A;  1GHQ B;  2XRB A;  1GKN A;  2W80 A;  1Z92 B;  2JGX A;  1ZJK A;  2EC3 A;  4PZ5 A;  2EHF A;  3R62 A;  2KRI A;  4F4O C;  1E8B A;  2XWJ I;  4WJG 2;  1OK9 A;  3EJH A;  2A55 A;  2RKZ A;  5HYT B;  3TVJ A;  1ELV A;  2RKY A;  2IZ3 A;  2V8E A;  1CKL A;  1O9A A;  1LY2 A;  1PPQ A;  2W81 A;  4LOS A;  3INB C;  1OK2 A;  1H04 P;  1SS2 A;  1TPG A;  1UOT P;  4KKD A;  4AYM A;  1HCC A;  2B5I D;  1QGB A;  2IZ4 A;  3KXV A;  1TPM A;  2G7I A;  1HFI A;  1Q3X A;  1QO6 A;  1OJV A;  4AYI A;  3GOV A;  5HYP A;  1TPN A;  2O39 C;  3IU3 I;  1MD8 A;  1QUB A;  2CG7 A;  5HZP B;  3NFP I;  4ONT D;  3O8E B;  1G4G A;  2XRD A;  2YBY A;  4A5W B;  4B2S A;  4CSY A;  2KMS A;  4AYE A;  2MCZ A;  4YNX A; 
#chains in the Genus database with same CATH topology
 5HYU B;  2JGW A;  2Y8S A;  1SRZ A;  2QY0 A;  1H03 P;  2ERJ A;  1RLH A;  2BZM A;  2CKU A;  3SW0 X;  1FBR A;  3MQL A;  2XQW C;  4MSL A;  2MCY A;  2UWN A;  3ZD2 A;  3L89 M;  3FGR A;  1OJY A;  3WSY A;  4FXG G;  2RLP A;  4DJZ A;  1VVC A;  5FO8 C;  3GXE A;  3KZJ A;  4K12 A;  2XWB F;  4C16 A;  3M7P A;  1H2P P;  3VWO A;  1VVD A;  4JHS A;  1C1Z A;  4BWC A;  3OXU D;  3F6K A;  1GPZ A;  3ZLD A;  1HFH A;  3ZD1 A;  1G4F A;  4N7E A;  3T5O A;  3ERB A;  1OK1 A;  3RJ3 D;  3CI0 J;  3CAL A;  4ZH1 D;  1E88 A;  2LOJ A;  2WII C;  3OED C;  1H2Q P;  4MUC A;  2RLQ A;  4IGD A;  1MD7 A;  2Y8T A;  4AYD A;  2ZYC A;  3IX0 A;  1NWV A;  4B2R A;  3OP8 A;  5DN4 A;  1GKG A;  5JPM G;  1OK3 A;  3ZRZ A;  4APL A;  1OJW A;  1E5G A;  4J38 B;  2JRA A;  2RL0 A;  2YRA A;  5I0Q B;  2CG6 A;  1U5M A;  4LOT A;  1GHQ B;  2XRB A;  1GKN A;  3FGT A;  2W80 A;  1Z92 B;  2JGX A;  1ZJK A;  2EC3 A;  2X2Z A;  4PZ5 A;  2EHF A;  3R62 A;  2KRI A;  4F4O C;  1E8B A;  2XWJ I;  4WJG 2;  1OK9 A;  3EJH A;  2A55 A;  2RKZ A;  5HYT B;  3TVJ A;  1ELV A;  2RKY A;  3WSX A;  2IZ3 A;  2V8E A;  1CKL A;  4PO7 A;  1O9A A;  1LY2 A;  1PPQ A;  3ZLE A;  5DN5 A;  3NJA A;  2W81 A;  4LOS A;  3INB C;  1OK2 A;  1H04 P;  1SS2 A;  1TPG A;  1UOT P;  4KKD A;  4AYM A;  1HCC A;  2B5I D;  1QGB A;  2IZ4 A;  3KXV A;  1TPM A;  2G7I A;  1HFI A;  1Q3X A;  1QO6 A;  4YIZ A;  1OJV A;  4AYI A;  3GOV A;  5HYP A;  1TPN A;  2O39 C;  3IU3 I;  1MD8 A;  1QUB A;  2CG7 A;  5HZP B;  3K3T A;  3NFP I;  4ONT D;  3O8E B;  1G4G A;  2XRD A;  2YBY A;  2Y8R A;  4A5W B;  4B2S A;  4CSY A;  2I2L A;  2KMS A;  4AYE A;  2MCZ A;  4YNX A; 
#chains in the Genus database with same CATH homology
 5HYU B;  2JGW A;  1SRZ A;  2QY0 A;  1H03 P;  2ERJ A;  2BZM A;  2CKU A;  3SW0 X;  1FBR A;  3MQL A;  2XQW C;  2MCY A;  2UWN A;  3ZD2 A;  3L89 M;  1OJY A;  4FXG G;  2RLP A;  4DJZ A;  1VVC A;  5FO8 C;  3GXE A;  3KZJ A;  4K12 A;  2XWB F;  4C16 A;  3M7P A;  1H2P P;  1VVD A;  4JHS A;  1C1Z A;  3OXU D;  1GPZ A;  1HFH A;  3ZD1 A;  1G4F A;  3T5O A;  3ERB A;  1OK1 A;  3RJ3 D;  3CAL A;  4ZH1 D;  1E88 A;  2LOJ A;  2WII C;  3OED C;  1H2Q P;  4MUC A;  2RLQ A;  4IGD A;  1MD7 A;  4AYD A;  3IX0 A;  1NWV A;  4B2R A;  3OP8 A;  1GKG A;  5JPM G;  1OK3 A;  3ZRZ A;  1OJW A;  1E5G A;  4J38 B;  2JRA A;  2RL0 A;  2YRA A;  5I0Q B;  2CG6 A;  1U5M A;  4LOT A;  1GHQ B;  2XRB A;  1GKN A;  2W80 A;  1Z92 B;  2JGX A;  1ZJK A;  2EC3 A;  4PZ5 A;  2EHF A;  3R62 A;  2KRI A;  4F4O C;  1E8B A;  2XWJ I;  4WJG 2;  1OK9 A;  3EJH A;  2A55 A;  2RKZ A;  5HYT B;  3TVJ A;  1ELV A;  2RKY A;  2IZ3 A;  2V8E A;  1CKL A;  1O9A A;  1LY2 A;  1PPQ A;  2W81 A;  4LOS A;  3INB C;  1OK2 A;  1H04 P;  1SS2 A;  1TPG A;  1UOT P;  4KKD A;  4AYM A;  1HCC A;  2B5I D;  1QGB A;  2IZ4 A;  3KXV A;  1TPM A;  2G7I A;  1HFI A;  1Q3X A;  1QO6 A;  1OJV A;  4AYI A;  3GOV A;  5HYP A;  1TPN A;  2O39 C;  3IU3 I;  1MD8 A;  1QUB A;  2CG7 A;  5HZP B;  3NFP I;  4ONT D;  3O8E B;  1G4G A;  2XRD A;  2YBY A;  4A5W B;  4B2S A;  4CSY A;  2KMS A;  4AYE A;  2MCZ A;  4YNX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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