2KQ1A

Solution structure of protein bh0266 from bacillus halodurans. northeast structural genomics consortium target bhr97a
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
119
structure length
119
Chain Sequence
MPTFDHGNLSLGELELTVLYDEERYDIVEQTETVQVDLEGPRGVLTVFRFARPSYEVFVDLTEAGEGSHTVDVEHRGFPGDLAVTVEPRMARVQLEERQTVSVPVTVEMINLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution Structure Of Protein BH0266 From Bacillus halodurans
rcsb
molecule tags Structural genomics, unknown function
source organism Bacillus halodurans
molecule keywords BH0266 protein
total genus 15
structure length 119
sequence length 119
ec nomenclature
pdb deposition date 2009-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07949 YbbR YbbR-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.30 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2 2kq1A01
5HQHA 2KQ1A 2KPUA 2L3UA 3LYWA 2L5NA
chains in the Genus database with same CATH superfamily
3GTMC 4G7HA 4A3CC 4XLPA 4YG2A 5C44C 4BY7C 1YNJA 4XSZA 4Y52C 4KMUA 4XLNA 5IP9C 4YFNA 5C3EC 5DM7S 3PIOS 4C3IC 4OIOA 1TWHC 2ZJRS 3HOXC 5C4JC 3RZOC 4LK1A 3PO3C 1I50C 4LJZA 5HL7S 1ZYRA 4C2MC 4OIRA 3CQZC 3S1NC 4OIPA 3HKZD 2JA6C 4BBSC 3S2DC 3FKIC 4OIQA 3RZDC 1SMYA 1YNNA 2NVYC 3S17C 2BE5A 2PA8D 3GTKC 3HOWC 4KN4A 2YU9C 3S1RC 4G7OA 4A3GC 5IYBC 3S1QC 4MEXA 3GTGC 2ZJQS 3HOVC 4A3JC 4IOCS 4WFNS 3GTOC 2PPBA 3S2HC 1TWGC 2KXYA 3EQLA 2JA7C 1I3QC 5JVGS 2L3UA 4ZH4A 4A93C 3H0GC 4Y7NC 2KPUA 4C3HC 4WFAS 2Y0SD 4XSXA 2R7ZC 4YFXA 5FLMC 2L5NA 4JK1A 1Y1WC 1I6VA 3GTJC 4GZYA 2KQ1A 4BY1C 2R92C 4X6AC 2A68A 2E2HC 4A3MC 2VUMC 2B63C 3I4NC 5C4XC 2O5JA 3HOUC 2A69A 1TWAC 2CW0A 4OINA 5HQHA 3WODA 5JVHS 3GTQC 4IOAS 1WCMC 4Q4ZA 4Q5SA 3HOYC 3GTLC 4WFBS 1HQMA 3DLLS 4AYBD 1I6HC 3PIPS 2WB1D 4C3JC 4MQ9A 2ZJPS 4U67S 1TWCC 5IYDC 3CF5S 2O5IA 4A3BC 2A6EA 4BXXC 4A3KC 1TWFC 2NVXC 4A3FC 3S16C 5IP7C 1BDFA 3K7AC 3HOZC 2JA8C 3M4OC 5DM6S 4IO9S 1IW7A 4LK0A 4G7ZA 3S14C 5TMCA 2PMZD 5IYCC 3LYWA 4WCES 2E2IC 3S1MC 4A3IC 1R9TC 4BBRC 3GTPC 3H3VD 3S15C 4LLGA 5TMFA 2JA5C 2NVTC 2R93C 4A3LC 3M3YC 1SFOC 3DXJA 4QIWD 2A6HA 4QJVA 4A3DC 3PO2C 4WF9S 3I4MC 4NOIA 2NVQC 2E2JC 1Y1VC 4KN7A 4A3EC 1K83C 5D4DA 4MEYA 2WAQD 1FEUA 4YFKA
chains in the Genus database with same CATH topology
5HQHA 2KQ1A 2KPUA 2KXYA 2L3UA 3LYWA 2L5NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5HQH A;  2KQ1 A;  2KPU A;  2L3U A;  3LYW A;  2L5N A; 
#chains in the Genus database with same CATH topology
 3GTM C;  4G7H A;  4A3C C;  4XLP A;  4YG2 A;  5C44 C;  4BY7 C;  1YNJ A;  4XSZ A;  4Y52 C;  4KMU A;  4XLN A;  5IP9 C;  4YFN A;  5C3E C;  5DM7 S;  3PIO S;  4C3I C;  4OIO A;  1TWH C;  2ZJR S;  3HOX C;  5C4J C;  3RZO C;  4LK1 A;  3PO3 C;  1I50 C;  4LJZ A;  5HL7 S;  1ZYR A;  4C2M C;  4OIR A;  3CQZ C;  3S1N C;  4OIP A;  3HKZ D;  2JA6 C;  4BBS C;  3S2D C;  3FKI C;  4OIQ A;  3RZD C;  1SMY A;  1YNN A;  2NVY C;  3S17 C;  2BE5 A;  2PA8 D;  3GTK C;  3HOW C;  4KN4 A;  2YU9 C;  3S1R C;  4G7O A;  4A3G C;  5IYB C;  3S1Q C;  4MEX A;  3GTG C;  2ZJQ S;  3HOV C;  4A3J C;  4IOC S;  4WFN S;  3GTO C;  2PPB A;  3S2H C;  1TWG C;  2KXY A;  3EQL A;  2JA7 C;  1I3Q C;  5JVG S;  2L3U A;  4ZH4 A;  4A93 C;  3H0G C;  4Y7N C;  2KPU A;  4C3H C;  4WFA S;  2Y0S D;  4XSX A;  2R7Z C;  4YFX A;  5FLM C;  2L5N A;  4JK1 A;  1Y1W C;  1I6V A;  3GTJ C;  4GZY A;  2KQ1 A;  4BY1 C;  2R92 C;  4X6A C;  2A68 A;  2E2H C;  4A3M C;  2VUM C;  2B63 C;  3I4N C;  5C4X C;  2O5J A;  3HOU C;  2A69 A;  1TWA C;  2CW0 A;  4OIN A;  5HQH A;  3WOD A;  5JVH S;  3GTQ C;  4IOA S;  1WCM C;  4Q4Z A;  4Q5S A;  3HOY C;  3GTL C;  4WFB S;  1HQM A;  3DLL S;  4AYB D;  1I6H C;  3PIP S;  2WB1 D;  4C3J C;  4MQ9 A;  2ZJP S;  4U67 S;  1TWC C;  5IYD C;  3CF5 S;  2O5I A;  4A3B C;  2A6E A;  4BXX C;  4A3K C;  1TWF C;  2NVX C;  4A3F C;  3S16 C;  5IP7 C;  1BDF A;  3K7A C;  3HOZ C;  2JA8 C;  3M4O C;  5DM6 S;  4IO9 S;  1IW7 A;  4LK0 A;  4G7Z A;  3S14 C;  5TMC A;  2PMZ D;  5IYC C;  3LYW A;  4WCE S;  2E2I C;  3S1M C;  4A3I C;  1R9T C;  4BBR C;  3GTP C;  3H3V D;  3S15 C;  4LLG A;  5TMF A;  2JA5 C;  2NVT C;  2R93 C;  4A3L C;  3M3Y C;  1SFO C;  3DXJ A;  4QIW D;  2A6H A;  4QJV A;  4A3D C;  3PO2 C;  4WF9 S;  3I4M C;  4NOI A;  2NVQ C;  2E2J C;  1Y1V C;  4KN7 A;  4A3E C;  1K83 C;  5D4D A;  4MEY A;  2WAQ D;  1FEU A;  4YFK A; 
#chains in the Genus database with same CATH homology
 5HQH A;  2KQ1 A;  2KPU A;  2KXY A;  2L3U A;  3LYW A;  2L5N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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