5C4JC

Crystal structure of a transcribing rna polymerase ii complex reveals a complete transcription bubble
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
265
structure length
265
Chain Sequence
EGPQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHRLGLIPLQSMDIEQLEYSRDCFCEDHCDKCSVVLTLQAFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDSAKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYMNVESVGSIPVDQVVVRGIDTLQKKVASILLALTQMDQD
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase II subunit RPB1
publication title Crystal Structure of a Transcribing RNA Polymerase II Complex Reveals a Complete Transcription Bubble.
pubmed doi rcsb
molecule tags Transferase/dna/rna
total genus 45
structure length 265
sequence length 265
ec nomenclature
pdb deposition date 2015-06-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
C PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 DNA-directed RNA polymerase, insert domain 5c4jC02
3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 RNA polymerase, RBP11-like subunit 5c4jC01
2JA5C 5FLMC 1K83C 1I50K 1TWGK 4OINA 3FKIK 5C4XK 3S14K 4YFKA 1I6HC 1I3QK 3PO3K 4AYBL 3GTKC 5FLMK 1TWHC 2PA8D 4YFNA 3WODA 3GTGK 1TWFC 1WCMC 4C3IC 2E2JK 3GTQC 4A3FK 4C2MC 3M4OC 3S1QC 3S16K 5IYDK 2NVQC 4XSXA 4BXXC 3GTKK 5M3FK 4A3IK 4A3JC 3S2DK 4MEYA 4OIRA 3S17C 3M4OK 4A3GC 2Y0SL 2NVQK 4XLPA 1BDFA 2WB1L 2PMZL 1XPPA 3I4NK 1R9TC 3K7AC 2NVXC 1TWGC 1I50C 2NVYC 3DXJA 4GZYA 4C3HK 3S14C 5C4XC 1I3QC 4ZH4A 4G7ZA 3RZDC 3RZOC 2NVYK 2VUMC 5IP7K 4KN4A 2O5IA 3GTGC 3S16C 5IYDC 5TMCA 4A3FC 2E2JC 2WAQL 2A6EA 3RZDK 4BBRK 3RZOK 2YU9K 4YG2A 2VUMK 2JA8C 4A3IC 3S2DC 4MEXA 4A3BK 3GTMK 2A68A 3S1NK 2R92K 3HOVC 2WAQD 2JA8K 4LLGA 4AYBD 3HOXC 3HOZK 1ZYRA 3I4NC 4Y52C 4OIQA 4A3KK 1YNJA 4Y7NC 2O5JA 4QIWL 4C3HC 2NVTK 3HOVK 3S1MK 4BY7K 3S1RC 3HOXK 4X6AK 4A3EC 4Y52K 4C3JK 5IP7C 3GTLK 4Q4ZA 4Y7NK 2Y0SD 2PPBA 3HOUC 2A69A 5TMFA 3S1RK 2JA7K 4QIWD 4A3EK 2WB1D 2PMZD 4BBRC 2YU9C 3HOYK 4KMUA 4A3MK 2R93K 3HOWK 1SMYA 4A3BC 3K7AK 2E2HK 3GTOK 2E2IK 3GTMC 3S1NC 3HOUK 3PO2K 4A3DK 2R92C 4QJVB 5IYBC 5IP9K 3HKZL 1YNNA 5C44C 3HOZC 2JA6C 2B63K 4A3KC 1Y1VK 5D4DA 4BBSC 3S2HC 4G7OA 2NVTC 3S1MC 4QJVA 4X6AC 4BY7C 1TWAK 1IW7A 5C44K 3H3VL 3I4MK 3GTJK 2JA6K 5IYCC 4C3JC 4BBSK 3GTLC 3S2HK 4Q5SA 1Y1WK 2JA7C 4NOIA 2PA8L 2R7ZK 3HOYC 5IYCK 5M5WK 4A93K 4A3MC 2R93C 4BY1K 4XLNA 3GTOC 3HOWC 3H0GK 2E2HC 3S15C 2E2IC 3CQZC 5C3EK 4OIOA 3M3YK 3PO2C 4A3DC 5IP9C 2JA5K 1K83K 4OIPA 3S15K 2A6HA 5C4JC 3CQZK 5IYBK 2B63C 4LK1A 1TWCC 4MQ9A 1Y1VC 4A3LC 1I6HK 4LK0A 1TWAC 5M3MK 2BE5A 4JK1A 4KN7A 1SFOC 1TWHK 3EQLA 3GTJC 3I4MC 1TWFK 1WCMK 4C3IK 5C4JK 3GTQK 4C2MK 3S1QK 1I6VA 2CW0A 3GTPC 1TWCK 4A3LK 4LJZA 5M5XK 4G7HA 5FJ8K 4BXXK 4A3CC 1SFOK 1Y1WC 4A3JK 3HKZD 2R7ZC 3S17K 3GTPK 5M5YK 4A93C 2NVXK 4A3GK 4BY1C 5C3EC 3H0GC 4A3CK 4YFXA 4XSZA 3M3YC 3FKIC 3H3VD 1R9TK 3PO3C 1HQMA
chains in the Genus database with same CATH superfamily
3AD9C 1SFOA 4OINA 1DD5A 3FKIK 3S14K 3L4JA 1I6HC 4WJ4A 5FLMK 4KMAA 4LR2A 5IYDK 4C2MC 4IOCS 3S17C 2NVQK 3GTGA 1XPPA 2ZJPS 1R9TC 2V6SA 1O29A 3GDZA 3S14C 4GTDA 4ZH4A 3GEHA 5EGEA 5IYDC 2A6EA 1DCOA 4KB2A 4BBRK 2YU9K 2VUMK 4MEXA 1C0AA 3HOXC 3N0BA 3TTGA 3PIOS 1RU0A 2ZUEA 4WFAS 2EBBA 2GSUA 5TMFA 4BBRC 2YU9C 1G51A 4A3MK 1SMYA 3HOUK 4QJVB 5IP9K 4LQYA 3LAJA 5IYBK 1VH2A 3H3VL 3BUEA 1IW7A 4IOAS 2P5MA 3GTJK 1BJTA 2KWAA 5IYCC 4M1XA 4BBSK 4GTAA 3N3YA 4Q5SA 1Y1WK 1XXAA 2PA8L 2B63A 1TWCA 1Y1VA 5M5WK 3S0XA 4A93K 4A3MC 1TWAA 3IPJA 5E68A 5L46A 1PJ6A 5IP9C 1VLOA 1K83K 2Y3PA 3BP3A 4G0WA 5IOSA 1BS2A 1XZPB 4MQ9A 3A8JA 1TWHK 1SFOC 4O2DA 3H0GA 3GTJC 3GTQK 3S1QK 3GTPC 4A3LK 4GFQA 4G7HA 4J3NA 4BXXK 2JA5A 1Y1WC 4WILA 4A93C 4A3GK 4YFXA 1TWFA 1WCMA 3H3VD 2V6TA 4ILDA 3PO3C 1HQMA 1I50K 1K83C 3VA7A 4KMHA 5HL8A 4AYBL 1TWHC 2PA8D 1WIHA 2E2JK 3GTQC 1WSRA 4A3FK 3S1QC 4KM8A 2NVXA 1TWGA 5IOQA 4BXXC 2XCRB 4A3IK 2ZFZA 1UV7A 1O24A 1JOEA 1I3QA 4A3GC 4XLPA 2VUMA 2XCQA 1BDFA 1O2FB 1I50C 2NVYC 3DXJA 3GTKA 4PAAA 4GZYA 4C3HK 4G7ZA 3RZDC 4PABA 1O2AA 2O5IA 2E2JC 5TMCA 4A3FC 4A3IC 4A3BK 3S1NK 4XCHA 3HOVC 2WAQD 4KATA 4AYBD 3HOZK 1ZYRA 4Y52C 4OIQA 4A3KK 1KQ4A 3A8KA 3A8IA 4Y7NC 2O5JA 2NVTK 4C3HC 4KASA 4BY7K 3JSTA 3S1RC 3HOXK 3GTMA 1ZBSA 2R92A 3T02A 3GTLK 4Q4ZA 2A69A 3HOWK 3GTOK 4A3BC 2E2HK 2E2IK 3S1NC 1JQWA 3FOEA 1YNNA 4LOWA 3HOZC 2JA6C 2ZUFA 2JA7A 4A3KC 4FM9A 5D4DA 3S2HC 4G7OA 2NVTC 3ADAC 3AD7C 2R93A 4BY7C 3Q3QA 4AH6A 3GTLC 3NUHA 1WOPA 2R7ZK 5IYCK 3CAGA 4XLNA 3GTOC 3HOWC 2E2HC 2E2IC 3CQZC 4OIOA 1X31C 1ISEA 4GTBA 4OIPA 4C45A 5C4JC 1YX2A 1WOOA 4LK0A 3V4GA 4DDQA 4WFNS 4C3IK 3DLLS 1I6VA 2CW0A 3AH5A 5M5XK 1SFOK 4A3JK 2R7ZC 4BLBA 3GTPK 1XXBA 2CFAB 2JH3A 3K7AK 3SZYA 4KMDA 5C4XK 4YFKA 3PO3K 3GTKC 3AQPA 2L3UA 3GTGK 4C3IC 3S16K 3M4OC 1IQ0A 1R9TA 2D6FC 5M3FK 3FOFA 4A3JC 4OIRA 3FKIA 1ZVUA 1F9NA 3T00A 1F7UA 1V5VA 3ERED 1O26A 2WB1L 2PMZL 4WJ3M 3K7AC 4WF9S 1IS1A 5C4XC 1J6VA 4P9SA 3RZOC 2NVYK 2RGRA 3GTGC 1WORA 3S16C 1XZQB 2WAQL 2FQOA 3RZDK 2CFAA 2JA8C 2A68A 3HXAA 3BP8C 3T01A 2ZJRS 3G4CA 2PHCB 4KAWX 1J98A 2YU9A 1DCPA 3HOVK 3S1MK 4X6AK 4GTFA 4A3EC 5JVOA 4G0UA 4Y52K 4C3JK 4Y7NK 1O2BA 1GE9A 1PJ7A 3S1RK 4QIWD 2V6UA 2WB1D 2PMZD 3TFHA 4G0VA 3HOYK 4KMUA 1ZQ1C 3PO2K 4A3DK 2GAGC 3LYWA 5C44C 4WFBS 2B63K 3LAPA 1Y1VK 1XZQA 1TWAK 3S1MC 2KQ1A 4X6AC 3I4MK 2JA6K 2KXYA 1F7VA 4C3JC 5HQHA 3S2HK 1XXCA 3TFIA 4NOIA 3HOYC 2GAHC 4P5AA 4BY1K 3H0GK 3S15C 3GTJA 3PO2C 4A3DC 5JFEA 3GTPA 2JA5K 1INNA 2A6HA 1Y1WA 3CQZK 1EI6A 2B63C 1TWCC 1Y1VC 1VRQC 5M3MK 1TWAC 1EQRA 2KPUA 4JK1A 4KN7A 1B4AA 1PJ5A 3EQLA 3I4MC 1TWFK 1WCMK 5C4JK 4WCES 1EH1A 1YCLA 1K83A 4A3CC 5JVGS 3SZZA 3MMLB 5M5YK 4BY1C 1TWHA 3H0GC 5JVHS 4XSZA 1VGXA 5CHPA 1O27A 3FKIC 3FHZA 3GTQA 2NVXK 1IBAA 2JA5C 5FLMC 1TWGK 1WQHA 1IL2A 3L4KA 3GEEA 1I3QK 5CJ9A 4YFNA 5DM6S 3WODA 4U67S 5IOTA 1TWFC 1WCMC 1HI9A 1JVIA 2NVQC 4FZBA 4XSXA 2NVYA 4RMFA 1I50A 3GTKK 3S2DK 4MEYA 3M4OK 2Y0SL 3QX3A 4GTCA 1WSVA 3OREA 3I4NK 1USMA 2NVXC 1TWGC 4KDDA 3AD8C 4KM9A 2GSNA 1I3QC 2VUMC 4KARA 5IP7K 4KN4A 5HL7S 4GTEA 3RZOK 4YG2A 3S2DC 3GTMK 2R92K 1AB4A 1EFWA 2JA8K 4LLGA 4BLAA 3I4NC 4GT9A 5DM7S 1J6XA 2ZJQS 2L5NA 1WQFA 3G4AA 2W7VA 1YNJA 3AQOA 4QIWL 3LPXA 4IO9S 3PIPS 1WQGA 3OEPA 2GSOA 5IP7C 1ZXOA 2Y0SD 2PPBA 3HOUC 1WOSA 2JA7K 2JA6A 1O25A 4A3EK 1O28A 1VJEA 2RH6A 2R93K 1F93A 4BKWA 3GTMC 3GIRA 2R92C 5IYBC 3GTLA 3HKZL 1J6WA 3N0CA 4BBSC 3CF5S 5EGHA 4QJVA 5IORA 3GTOA 4KB4A 5C44K 2E2HA 3TFJA 2E2IA 3CQZA 2XCOA 3OPFA 2JA7C 1B4BA 4GTLA 3GEIA 2R93C 5C3EK 3M3YK 1BGWA 2FQTA 1USOA 1FEUA 3S15K 1L0WA 4LK1A 1EK8A 4A3LC 2R7ZA 1I6HK 2BE5A 1DCHA 4C2MK 1TWCK 1XZPA 4LJZA 5FJ8K 4P5BA 5TJ3A 3HKZD 1IE0A 4KC6A 3S17K 2P8TA 5C3EC 4A3CK 3GSIA 3M3YC 1R9TK
chains in the Genus database with same CATH topology
2JA5C 5FLMC 1K83C 1I50K 1TWGK 4OINA 3FKIK 5C4XK 3S14K 4YFKA 1I6HC 1I3QK 3PO3K 4AYBL 3GTKC 5FLMK 1TWHC 2PA8D 4YFNA 3WODA 3GTGK 1TWFC 1WCMC 4C3IC 2E2JK 3GTQC 4A3FK 4C2MC 3M4OC 3S1QC 3S16K 5IYDK 2NVQC 4XSXA 4BXXC 3GTKK 5M3FK 4A3IK 4A3JC 3S2DK 4MEYA 4OIRA 3S17C 3M4OK 4A3GC 2Y0SL 2NVQK 4XLPA 1BDFA 2WB1L 2PMZL 1XPPA 3I4NK 1R9TC 3K7AC 2NVXC 1TWGC 1I50C 2NVYC 3DXJA 4GZYA 4C3HK 3S14C 5C4XC 1I3QC 4ZH4A 4G7ZA 3RZDC 3RZOC 2NVYK 2VUMC 5IP7K 4KN4A 2O5IA 3GTGC 3S16C 5IYDC 5TMCA 4A3FC 2E2JC 2WAQL 2A6EA 3RZDK 4BBRK 3RZOK 2YU9K 4YG2A 2VUMK 2JA8C 4A3IC 3S2DC 4MEXA 4A3BK 3GTMK 2A68A 3S1NK 2R92K 3HOVC 2WAQD 2JA8K 4LLGA 4AYBD 3HOXC 3HOZK 1ZYRA 3I4NC 4Y52C 4OIQA 4A3KK 1YNJA 4Y7NC 2O5JA 4QIWL 4C3HC 2NVTK 3HOVK 3S1MK 4BY7K 3S1RC 3HOXK 4X6AK 4A3EC 4Y52K 4C3JK 5IP7C 3GTLK 4Q4ZA 4Y7NK 2Y0SD 2PPBA 3HOUC 2A69A 5TMFA 3S1RK 2JA7K 4QIWD 4A3EK 2WB1D 2PMZD 4BBRC 2YU9C 3HOYK 4KMUA 4A3MK 2R93K 3HOWK 1SMYA 4A3BC 3K7AK 2E2HK 3GTOK 2E2IK 3GTMC 3S1NC 3HOUK 3PO2K 4A3DK 2R92C 4QJVB 5IYBC 5IP9K 3HKZL 1YNNA 5C44C 3HOZC 2JA6C 2B63K 4A3KC 1Y1VK 5D4DA 4BBSC 3S2HC 4G7OA 2NVTC 3S1MC 4QJVA 4X6AC 4BY7C 1TWAK 1IW7A 5C44K 3H3VL 3I4MK 3GTJK 2JA6K 5IYCC 4C3JC 4BBSK 3GTLC 3S2HK 4Q5SA 1Y1WK 2JA7C 4NOIA 2PA8L 2R7ZK 3HOYC 5IYCK 5M5WK 4A93K 4A3MC 2R93C 4BY1K 4XLNA 3GTOC 3HOWC 3H0GK 2E2HC 3S15C 2E2IC 3CQZC 5C3EK 4OIOA 3M3YK 3PO2C 4A3DC 5IP9C 2JA5K 1K83K 4OIPA 3S15K 2A6HA 5C4JC 3CQZK 5IYBK 2B63C 4LK1A 1TWCC 4MQ9A 1Y1VC 4A3LC 1I6HK 4LK0A 1TWAC 5M3MK 2BE5A 4JK1A 4KN7A 1SFOC 1TWHK 3EQLA 3GTJC 3I4MC 1TWFK 1WCMK 4C3IK 5C4JK 3GTQK 4C2MK 3S1QK 1I6VA 2CW0A 3GTPC 1TWCK 4A3LK 4LJZA 5M5XK 4G7HA 5FJ8K 4BXXK 4A3CC 1SFOK 1Y1WC 4A3JK 3HKZD 2R7ZC 3S17K 3GTPK 5M5YK 4A93C 2NVXK 4A3GK 4BY1C 5C3EC 3H0GC 4A3CK 4YFXA 4XSZA 3M3YC 3FKIC 3H3VD 1R9TK 3PO3C 1HQMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JA5 C;  5FLM C;  1K83 C;  1I50 K;  1TWG K;  4OIN A;  3FKI K;  5C4X K;  3S14 K;  4YFK A;  1I6H C;  1I3Q K;  3PO3 K;  4AYB L;  3GTK C;  5FLM K;  1TWH C;  2PA8 D;  4YFN A;  3WOD A;  3GTG K;  1TWF C;  1WCM C;  4C3I C;  2E2J K;  3GTQ C;  4A3F K;  4C2M C;  3M4O C;  3S1Q C;  3S16 K;  5IYD K;  2NVQ C;  4XSX A;  4BXX C;  3GTK K;  5M3F K;  4A3I K;  4A3J C;  3S2D K;  4MEY A;  4OIR A;  3S17 C;  3M4O K;  4A3G C;  2Y0S L;  2NVQ K;  4XLP A;  1BDF A;  2WB1 L;  2PMZ L;  1XPP A;  3I4N K;  1R9T C;  3K7A C;  2NVX C;  1TWG C;  1I50 C;  2NVY C;  3DXJ A;  4GZY A;  4C3H K;  3S14 C;  5C4X C;  1I3Q C;  4ZH4 A;  4G7Z A;  3RZD C;  3RZO C;  2NVY K;  2VUM C;  5IP7 K;  4KN4 A;  2O5I A;  3GTG C;  3S16 C;  5IYD C;  5TMC A;  4A3F C;  2E2J C;  2WAQ L;  2A6E A;  3RZD K;  4BBR K;  3RZO K;  2YU9 K;  4YG2 A;  2VUM K;  2JA8 C;  4A3I C;  3S2D C;  4MEX A;  4A3B K;  3GTM K;  2A68 A;  3S1N K;  2R92 K;  3HOV C;  2WAQ D;  2JA8 K;  4LLG A;  4AYB D;  3HOX C;  3HOZ K;  1ZYR A;  3I4N C;  4Y52 C;  4OIQ A;  4A3K K;  1YNJ A;  4Y7N C;  2O5J A;  4QIW L;  4C3H C;  2NVT K;  3HOV K;  3S1M K;  4BY7 K;  3S1R C;  3HOX K;  4X6A K;  4A3E C;  4Y52 K;  4C3J K;  5IP7 C;  3GTL K;  4Q4Z A;  4Y7N K;  2Y0S D;  2PPB A;  3HOU C;  2A69 A;  5TMF A;  3S1R K;  2JA7 K;  4QIW D;  4A3E K;  2WB1 D;  2PMZ D;  4BBR C;  2YU9 C;  3HOY K;  4KMU A;  4A3M K;  2R93 K;  3HOW K;  1SMY A;  4A3B C;  3K7A K;  2E2H K;  3GTO K;  2E2I K;  3GTM C;  3S1N C;  3HOU K;  3PO2 K;  4A3D K;  2R92 C;  4QJV B;  5IYB C;  5IP9 K;  3HKZ L;  1YNN A;  5C44 C;  3HOZ C;  2JA6 C;  2B63 K;  4A3K C;  1Y1V K;  5D4D A;  4BBS C;  3S2H C;  4G7O A;  2NVT C;  3S1M C;  4QJV A;  4X6A C;  4BY7 C;  1TWA K;  1IW7 A;  5C44 K;  3H3V L;  3I4M K;  3GTJ K;  2JA6 K;  5IYC C;  4C3J C;  4BBS K;  3GTL C;  3S2H K;  4Q5S A;  1Y1W K;  2JA7 C;  4NOI A;  2PA8 L;  2R7Z K;  3HOY C;  5IYC K;  5M5W K;  4A93 K;  4A3M C;  2R93 C;  4BY1 K;  4XLN A;  3GTO C;  3HOW C;  3H0G K;  2E2H C;  3S15 C;  2E2I C;  3CQZ C;  5C3E K;  4OIO A;  3M3Y K;  3PO2 C;  4A3D C;  5IP9 C;  2JA5 K;  1K83 K;  4OIP A;  3S15 K;  2A6H A;  5C4J C;  3CQZ K;  5IYB K;  2B63 C;  4LK1 A;  1TWC C;  4MQ9 A;  1Y1V C;  4A3L C;  1I6H K;  4LK0 A;  1TWA C;  5M3M K;  2BE5 A;  4JK1 A;  4KN7 A;  1SFO C;  1TWH K;  3EQL A;  3GTJ C;  3I4M C;  1TWF K;  1WCM K;  4C3I K;  5C4J K;  3GTQ K;  4C2M K;  3S1Q K;  1I6V A;  2CW0 A;  3GTP C;  1TWC K;  4A3L K;  4LJZ A;  5M5X K;  4G7H A;  5FJ8 K;  4BXX K;  4A3C C;  1SFO K;  1Y1W C;  4A3J K;  3HKZ D;  2R7Z C;  3S17 K;  3GTP K;  5M5Y K;  4A93 C;  2NVX K;  4A3G K;  4BY1 C;  5C3E C;  3H0G C;  4A3C K;  4YFX A;  4XSZ A;  3M3Y C;  3FKI C;  3H3V D;  1R9T K;  3PO3 C;  1HQM A; 
#chains in the Genus database with same CATH topology
 3AD9 C;  1SFO A;  4OIN A;  1DD5 A;  3FKI K;  3S14 K;  3L4J A;  1I6H C;  4WJ4 A;  5FLM K;  4KMA A;  4LR2 A;  5IYD K;  4C2M C;  4IOC S;  3S17 C;  2NVQ K;  3GTG A;  1XPP A;  2ZJP S;  1R9T C;  2V6S A;  1O29 A;  3GDZ A;  3S14 C;  4GTD A;  4ZH4 A;  3GEH A;  5EGE A;  5IYD C;  2A6E A;  1DCO A;  4KB2 A;  4BBR K;  2YU9 K;  2VUM K;  4MEX A;  1C0A A;  3HOX C;  3N0B A;  3TTG A;  3PIO S;  1RU0 A;  2ZUE A;  4WFA S;  2EBB A;  2GSU A;  5TMF A;  4BBR C;  2YU9 C;  1G51 A;  4A3M K;  1SMY A;  3HOU K;  4QJV B;  5IP9 K;  4LQY A;  3LAJ A;  5IYB K;  1VH2 A;  3H3V L;  3BUE A;  1IW7 A;  4IOA S;  2P5M A;  3GTJ K;  1BJT A;  2KWA A;  5IYC C;  4M1X A;  4BBS K;  4GTA A;  3N3Y A;  4Q5S A;  1Y1W K;  1XXA A;  2PA8 L;  2B63 A;  1TWC A;  1Y1V A;  5M5W K;  3S0X A;  4A93 K;  4A3M C;  1TWA A;  3IPJ A;  5E68 A;  5L46 A;  1PJ6 A;  5IP9 C;  1VLO A;  1K83 K;  2Y3P A;  3BP3 A;  4G0W A;  5IOS A;  1BS2 A;  1XZP B;  4MQ9 A;  3A8J A;  1TWH K;  1SFO C;  4O2D A;  3H0G A;  3GTJ C;  3GTQ K;  3S1Q K;  3GTP C;  4A3L K;  4GFQ A;  4G7H A;  4J3N A;  4BXX K;  2JA5 A;  1Y1W C;  4WIL A;  4A93 C;  4A3G K;  4YFX A;  1TWF A;  1WCM A;  3H3V D;  2V6T A;  4ILD A;  3PO3 C;  1HQM A;  1I50 K;  1K83 C;  3VA7 A;  4KMH A;  5HL8 A;  4AYB L;  1TWH C;  2PA8 D;  1WIH A;  2E2J K;  3GTQ C;  1WSR A;  4A3F K;  3S1Q C;  4KM8 A;  2NVX A;  1TWG A;  5IOQ A;  4BXX C;  2XCR B;  4A3I K;  2ZFZ A;  1UV7 A;  1O24 A;  1JOE A;  1I3Q A;  4A3G C;  4XLP A;  2VUM A;  2XCQ A;  1BDF A;  1O2F B;  1I50 C;  2NVY C;  3DXJ A;  3GTK A;  4PAA A;  4GZY A;  4C3H K;  4G7Z A;  3RZD C;  4PAB A;  1O2A A;  2O5I A;  2E2J C;  5TMC A;  4A3F C;  4A3I C;  4A3B K;  3S1N K;  4XCH A;  3HOV C;  2WAQ D;  4KAT A;  4AYB D;  3HOZ K;  1ZYR A;  4Y52 C;  4OIQ A;  4A3K K;  1KQ4 A;  3A8K A;  3A8I A;  4Y7N C;  2O5J A;  2NVT K;  4C3H C;  4KAS A;  4BY7 K;  3JST A;  3S1R C;  3HOX K;  3GTM A;  1ZBS A;  2R92 A;  3T02 A;  3GTL K;  4Q4Z A;  2A69 A;  3HOW K;  3GTO K;  4A3B C;  2E2H K;  2E2I K;  3S1N C;  1JQW A;  3FOE A;  1YNN A;  4LOW A;  3HOZ C;  2JA6 C;  2ZUF A;  2JA7 A;  4A3K C;  4FM9 A;  5D4D A;  3S2H C;  4G7O A;  2NVT C;  3ADA C;  3AD7 C;  2R93 A;  4BY7 C;  3Q3Q A;  4AH6 A;  3GTL C;  3NUH A;  1WOP A;  2R7Z K;  5IYC K;  3CAG A;  4XLN A;  3GTO C;  3HOW C;  2E2H C;  2E2I C;  3CQZ C;  4OIO A;  1X31 C;  1ISE A;  4GTB A;  4OIP A;  4C45 A;  5C4J C;  1YX2 A;  1WOO A;  4LK0 A;  3V4G A;  4DDQ A;  4WFN S;  4C3I K;  3DLL S;  1I6V A;  2CW0 A;  3AH5 A;  5M5X K;  1SFO K;  4A3J K;  2R7Z C;  4BLB A;  3GTP K;  1XXB A;  2CFA B;  2JH3 A;  3K7A K;  3SZY A;  4KMD A;  5C4X K;  4YFK A;  3PO3 K;  3GTK C;  3AQP A;  2L3U A;  3GTG K;  4C3I C;  3S16 K;  3M4O C;  1IQ0 A;  1R9T A;  2D6F C;  5M3F K;  3FOF A;  4A3J C;  4OIR A;  3FKI A;  1ZVU A;  1F9N A;  3T00 A;  1F7U A;  1V5V A;  3ERE D;  1O26 A;  2WB1 L;  2PMZ L;  4WJ3 M;  3K7A C;  4WF9 S;  1IS1 A;  5C4X C;  1J6V A;  4P9S A;  3RZO C;  2NVY K;  2RGR A;  3GTG C;  1WOR A;  3S16 C;  1XZQ B;  2WAQ L;  2FQO A;  3RZD K;  2CFA A;  2JA8 C;  2A68 A;  3HXA A;  3BP8 C;  3T01 A;  2ZJR S;  3G4C A;  2PHC B;  4KAW X;  1J98 A;  2YU9 A;  1DCP A;  3HOV K;  3S1M K;  4X6A K;  4GTF A;  4A3E C;  5JVO A;  4G0U A;  4Y52 K;  4C3J K;  4Y7N K;  1O2B A;  1GE9 A;  1PJ7 A;  3S1R K;  4QIW D;  2V6U A;  2WB1 D;  2PMZ D;  3TFH A;  4G0V A;  3HOY K;  4KMU A;  1ZQ1 C;  3PO2 K;  4A3D K;  2GAG C;  3LYW A;  5C44 C;  4WFB S;  2B63 K;  3LAP A;  1Y1V K;  1XZQ A;  1TWA K;  3S1M C;  2KQ1 A;  4X6A C;  3I4M K;  2JA6 K;  2KXY A;  1F7V A;  4C3J C;  5HQH A;  3S2H K;  1XXC A;  3TFI A;  4NOI A;  3HOY C;  2GAH C;  4P5A A;  4BY1 K;  3H0G K;  3S15 C;  3GTJ A;  3PO2 C;  4A3D C;  5JFE A;  3GTP A;  2JA5 K;  1INN A;  2A6H A;  1Y1W A;  3CQZ K;  1EI6 A;  2B63 C;  1TWC C;  1Y1V C;  1VRQ C;  5M3M K;  1TWA C;  1EQR A;  2KPU A;  4JK1 A;  4KN7 A;  1B4A A;  1PJ5 A;  3EQL A;  3I4M C;  1TWF K;  1WCM K;  5C4J K;  4WCE S;  1EH1 A;  1YCL A;  1K83 A;  4A3C C;  5JVG S;  3SZZ A;  3MML B;  5M5Y K;  4BY1 C;  1TWH A;  3H0G C;  5JVH S;  4XSZ A;  1VGX A;  5CHP A;  1O27 A;  3FKI C;  3FHZ A;  3GTQ A;  2NVX K;  1IBA A;  2JA5 C;  5FLM C;  1TWG K;  1WQH A;  1IL2 A;  3L4K A;  3GEE A;  1I3Q K;  5CJ9 A;  4YFN A;  5DM6 S;  3WOD A;  4U67 S;  5IOT A;  1TWF C;  1WCM C;  1HI9 A;  1JVI A;  2NVQ C;  4FZB A;  4XSX A;  2NVY A;  4RMF A;  1I50 A;  3GTK K;  3S2D K;  4MEY A;  3M4O K;  2Y0S L;  3QX3 A;  4GTC A;  1WSV A;  3ORE A;  3I4N K;  1USM A;  2NVX C;  1TWG C;  4KDD A;  3AD8 C;  4KM9 A;  2GSN A;  1I3Q C;  2VUM C;  4KAR A;  5IP7 K;  4KN4 A;  5HL7 S;  4GTE A;  3RZO K;  4YG2 A;  3S2D C;  3GTM K;  2R92 K;  1AB4 A;  1EFW A;  2JA8 K;  4LLG A;  4BLA A;  3I4N C;  4GT9 A;  5DM7 S;  1J6X A;  2ZJQ S;  2L5N A;  1WQF A;  3G4A A;  2W7V A;  1YNJ A;  3AQO A;  4QIW L;  3LPX A;  4IO9 S;  3PIP S;  1WQG A;  3OEP A;  2GSO A;  5IP7 C;  1ZXO A;  2Y0S D;  2PPB A;  3HOU C;  1WOS A;  2JA7 K;  2JA6 A;  1O25 A;  4A3E K;  1O28 A;  1VJE A;  2RH6 A;  2R93 K;  1F93 A;  4BKW A;  3GTM C;  3GIR A;  2R92 C;  5IYB C;  3GTL A;  3HKZ L;  1J6W A;  3N0C A;  4BBS C;  3CF5 S;  5EGH A;  4QJV A;  5IOR A;  3GTO A;  4KB4 A;  5C44 K;  2E2H A;  3TFJ A;  2E2I A;  3CQZ A;  2XCO A;  3OPF A;  2JA7 C;  1B4B A;  4GTL A;  3GEI A;  2R93 C;  5C3E K;  3M3Y K;  1BGW A;  2FQT A;  1USO A;  1FEU A;  3S15 K;  1L0W A;  4LK1 A;  1EK8 A;  4A3L C;  2R7Z A;  1I6H K;  2BE5 A;  1DCH A;  4C2M K;  1TWC K;  1XZP A;  4LJZ A;  5FJ8 K;  4P5B A;  5TJ3 A;  3HKZ D;  1IE0 A;  4KC6 A;  3S17 K;  2P8T A;  5C3E C;  4A3C K;  3GSI A;  3M3Y C;  1R9T K; 
#chains in the Genus database with same CATH homology
 2JA5 C;  5FLM C;  1K83 C;  1I50 K;  1TWG K;  4OIN A;  3FKI K;  5C4X K;  3S14 K;  4YFK A;  1I6H C;  1I3Q K;  3PO3 K;  4AYB L;  3GTK C;  5FLM K;  1TWH C;  2PA8 D;  4YFN A;  3WOD A;  3GTG K;  1TWF C;  1WCM C;  4C3I C;  2E2J K;  3GTQ C;  4A3F K;  4C2M C;  3M4O C;  3S1Q C;  3S16 K;  5IYD K;  2NVQ C;  4XSX A;  4BXX C;  3GTK K;  5M3F K;  4A3I K;  4A3J C;  3S2D K;  4MEY A;  4OIR A;  3S17 C;  3M4O K;  4A3G C;  2Y0S L;  2NVQ K;  4XLP A;  1BDF A;  2WB1 L;  2PMZ L;  1XPP A;  3I4N K;  1R9T C;  3K7A C;  2NVX C;  1TWG C;  1I50 C;  2NVY C;  3DXJ A;  4GZY A;  4C3H K;  3S14 C;  5C4X C;  1I3Q C;  4ZH4 A;  4G7Z A;  3RZD C;  3RZO C;  2NVY K;  2VUM C;  5IP7 K;  4KN4 A;  2O5I A;  3GTG C;  3S16 C;  5IYD C;  5TMC A;  4A3F C;  2E2J C;  2WAQ L;  2A6E A;  3RZD K;  4BBR K;  3RZO K;  2YU9 K;  4YG2 A;  2VUM K;  2JA8 C;  4A3I C;  3S2D C;  4MEX A;  4A3B K;  3GTM K;  2A68 A;  3S1N K;  2R92 K;  3HOV C;  2WAQ D;  2JA8 K;  4LLG A;  4AYB D;  3HOX C;  3HOZ K;  1ZYR A;  3I4N C;  4Y52 C;  4OIQ A;  4A3K K;  1YNJ A;  4Y7N C;  2O5J A;  4QIW L;  4C3H C;  2NVT K;  3HOV K;  3S1M K;  4BY7 K;  3S1R C;  3HOX K;  4X6A K;  4A3E C;  4Y52 K;  4C3J K;  5IP7 C;  3GTL K;  4Q4Z A;  4Y7N K;  2Y0S D;  2PPB A;  3HOU C;  2A69 A;  5TMF A;  3S1R K;  2JA7 K;  4QIW D;  4A3E K;  2WB1 D;  2PMZ D;  4BBR C;  2YU9 C;  3HOY K;  4KMU A;  4A3M K;  2R93 K;  3HOW K;  1SMY A;  4A3B C;  3K7A K;  2E2H K;  3GTO K;  2E2I K;  3GTM C;  3S1N C;  3HOU K;  3PO2 K;  4A3D K;  2R92 C;  4QJV B;  5IYB C;  5IP9 K;  3HKZ L;  1YNN A;  5C44 C;  3HOZ C;  2JA6 C;  2B63 K;  4A3K C;  1Y1V K;  5D4D A;  4BBS C;  3S2H C;  4G7O A;  2NVT C;  3S1M C;  4QJV A;  4X6A C;  4BY7 C;  1TWA K;  1IW7 A;  5C44 K;  3H3V L;  3I4M K;  3GTJ K;  2JA6 K;  5IYC C;  4C3J C;  4BBS K;  3GTL C;  3S2H K;  4Q5S A;  1Y1W K;  2JA7 C;  4NOI A;  2PA8 L;  2R7Z K;  3HOY C;  5IYC K;  5M5W K;  4A93 K;  4A3M C;  2R93 C;  4BY1 K;  4XLN A;  3GTO C;  3HOW C;  3H0G K;  2E2H C;  3S15 C;  2E2I C;  3CQZ C;  5C3E K;  4OIO A;  3M3Y K;  3PO2 C;  4A3D C;  5IP9 C;  2JA5 K;  1K83 K;  4OIP A;  3S15 K;  2A6H A;  5C4J C;  3CQZ K;  5IYB K;  2B63 C;  4LK1 A;  1TWC C;  4MQ9 A;  1Y1V C;  4A3L C;  1I6H K;  4LK0 A;  1TWA C;  5M3M K;  2BE5 A;  4JK1 A;  4KN7 A;  1SFO C;  1TWH K;  3EQL A;  3GTJ C;  3I4M C;  1TWF K;  1WCM K;  4C3I K;  5C4J K;  3GTQ K;  4C2M K;  3S1Q K;  1I6V A;  2CW0 A;  3GTP C;  1TWC K;  4A3L K;  4LJZ A;  5M5X K;  4G7H A;  5FJ8 K;  4BXX K;  4A3C C;  1SFO K;  1Y1W C;  4A3J K;  3HKZ D;  2R7Z C;  3S17 K;  3GTP K;  5M5Y K;  4A93 C;  2NVX K;  4A3G K;  4BY1 C;  5C3E C;  3H0G C;  4A3C K;  4YFX A;  4XSZ A;  3M3Y C;  3FKI C;  3H3V D;  1R9T K;  3PO3 C;  1HQM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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