5HQHA

1.32 angstrom crystal structure of ybbr like domain of lmo2119 protein from listeria monocytogenes.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
96
structure length
96
Chain Sequence
SDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Lmo2119 protein
publication title 1.32 Angstrom Crystal Structure of Ybbr like Domain of lmo2119 Protein from Listeria monocytogenes.
rcsb
source organism Listeria monocytogenes serovar 1/2a
molecule tags Unknown function
total genus 18
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2016-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07949 YbbR YbbR-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.30 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2 5hqhA00
2KQ1A 3LYWA 2L3UA 5HQHA 2L5NA 2KPUA
chains in the Genus database with same CATH superfamily
3EQLA 4G7HA 4OIRA 4YFKA 4Q4ZA 3HKZD 3LYWA 3S1RC 2Y0SD 2E2IC 2KPUA 4BBRC 1TWFC 4C2MC 5C44C 2BE5A 5C3EC 4LLGA 3GTJC 4OIOA 4KMUA 2E2JC 1TWAC 2KQ1A 4WF9S 4A3GC 1I6HC 2L3UA 2JA8C 2JA7C 4BXXC 2JA5C 1I50C 4LK1A 4KN4A 5DM7S 4XSXA 2NVTC 4G7OA 1K83C 2A68A 5D4DA 4LJZA 4QIWD 4LK0A 5TMFA 5JVGS 2YU9C 4WFBS 3HOYC 3RZOC 3HOWC 4X6AC 3PO2C 4ZH4A 3I4NC 1Y1VC 4YFXA 2O5JA 5JVHS 3GTGC 3HOZC 3PIOS 3S16C 5FLMC 2E2HC 3GTPC 3S2DC 2R92C 4OINA 2JA6C 3HOUC 3H0GC 3DXJA 4WCES 3S2HC 4A93C 3FKIC 4XLNA 4A3MC 3GTKC 1YNJA 1ZYRA 4WFNS 4Q5SA 3S1QC 3HOVC 1HQMA 5IYBC 2VUMC 2R93C 4U67S 3GTQC 4BBSC 2CW0A 3M3YC 1SMYA 4A3EC 2B63C 3PO3C 1Y1WC 5HL7S 4A3BC 4A3DC 2PPBA 4GZYA 5TMCA 4YFNA 5IP9C 2WAQD 5HQHA 3CQZC 4A3KC 1BDFA 2L5NA 3K7AC 1TWGC 3GTMC 2A69A 3S1NC 2ZJPS 4Y7NC 4C3HC 4A3FC 3S15C 5DM6S 5C4JC 4A3LC 1TWHC 2NVQC 1I3QC 3GTOC 1FEUA 4JK1A 5C4XC 5IYCC 3RZDC 1SFOC 4BY1C 2PMZD 3S17C 4C3IC 3CF5S 4XLPA 4IOAS 1YNNA 2PA8D 4WFAS 4OIPA 1IW7A 1WCMC 2NVYC 2A6EA 3PIPS 3M4OC 1R9TC 5IP7C 3GTLC 1I6VA 4KN7A 3H3VD 3I4MC 4YG2A 3HOXC 2O5IA 4A3CC 2ZJRS 1TWCC 3WODA 4C3JC 3S14C 4QJVA 4XSZA 3DLLS 4A3IC 2KXYA 4Y52C 4AYBD 2A6HA 2R7ZC 3S1MC 4OIQA 4MEYA 4G7ZA 4MEXA 2NVXC 4BY7C 4NOIA 5IYDC 2ZJQS 2WB1D 4IOCS 4IO9S 4A3JC 4MQ9A
chains in the Genus database with same CATH topology
2KQ1A 2KXYA 3LYWA 2L3UA 5HQHA 2L5NA 2KPUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KQ1 A;  3LYW A;  2L3U A;  5HQH A;  2L5N A;  2KPU A; 
#chains in the Genus database with same CATH topology
 3EQL A;  4G7H A;  4OIR A;  4YFK A;  4Q4Z A;  3HKZ D;  3LYW A;  3S1R C;  2Y0S D;  2E2I C;  2KPU A;  4BBR C;  1TWF C;  4C2M C;  5C44 C;  2BE5 A;  5C3E C;  4LLG A;  3GTJ C;  4OIO A;  4KMU A;  2E2J C;  1TWA C;  2KQ1 A;  4WF9 S;  4A3G C;  1I6H C;  2L3U A;  2JA8 C;  2JA7 C;  4BXX C;  2JA5 C;  1I50 C;  4LK1 A;  4KN4 A;  5DM7 S;  4XSX A;  2NVT C;  4G7O A;  1K83 C;  2A68 A;  5D4D A;  4LJZ A;  4QIW D;  4LK0 A;  5TMF A;  5JVG S;  2YU9 C;  4WFB S;  3HOY C;  3RZO C;  3HOW C;  4X6A C;  3PO2 C;  4ZH4 A;  3I4N C;  1Y1V C;  4YFX A;  2O5J A;  5JVH S;  3GTG C;  3HOZ C;  3PIO S;  3S16 C;  5FLM C;  2E2H C;  3GTP C;  3S2D C;  2R92 C;  4OIN A;  2JA6 C;  3HOU C;  3H0G C;  3DXJ A;  4WCE S;  3S2H C;  4A93 C;  3FKI C;  4XLN A;  4A3M C;  3GTK C;  1YNJ A;  1ZYR A;  4WFN S;  4Q5S A;  3S1Q C;  3HOV C;  1HQM A;  5IYB C;  2VUM C;  2R93 C;  4U67 S;  3GTQ C;  4BBS C;  2CW0 A;  3M3Y C;  1SMY A;  4A3E C;  2B63 C;  3PO3 C;  1Y1W C;  5HL7 S;  4A3B C;  4A3D C;  2PPB A;  4GZY A;  5TMC A;  4YFN A;  5IP9 C;  2WAQ D;  5HQH A;  3CQZ C;  4A3K C;  1BDF A;  2L5N A;  3K7A C;  1TWG C;  3GTM C;  2A69 A;  3S1N C;  2ZJP S;  4Y7N C;  4C3H C;  4A3F C;  3S15 C;  5DM6 S;  5C4J C;  4A3L C;  1TWH C;  2NVQ C;  1I3Q C;  3GTO C;  1FEU A;  4JK1 A;  5C4X C;  5IYC C;  3RZD C;  1SFO C;  4BY1 C;  2PMZ D;  3S17 C;  4C3I C;  3CF5 S;  4XLP A;  4IOA S;  1YNN A;  2PA8 D;  4WFA S;  4OIP A;  1IW7 A;  1WCM C;  2NVY C;  2A6E A;  3PIP S;  3M4O C;  1R9T C;  5IP7 C;  3GTL C;  1I6V A;  4KN7 A;  3H3V D;  3I4M C;  4YG2 A;  3HOX C;  2O5I A;  4A3C C;  2ZJR S;  1TWC C;  3WOD A;  4C3J C;  3S14 C;  4QJV A;  4XSZ A;  3DLL S;  4A3I C;  2KXY A;  4Y52 C;  4AYB D;  2A6H A;  2R7Z C;  3S1M C;  4OIQ A;  4MEY A;  4G7Z A;  4MEX A;  2NVX C;  4BY7 C;  4NOI A;  5IYD C;  2ZJQ S;  2WB1 D;  4IOC S;  4IO9 S;  4A3J C;  4MQ9 A; 
#chains in the Genus database with same CATH homology
 2KQ1 A;  2KXY A;  3LYW A;  2L3U A;  5HQH A;  2L5N A;  2KPU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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