5HQHA

1.32 angstrom crystal structure of ybbr like domain of lmo2119 protein from listeria monocytogenes.
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
96
structure length
96
Chain Sequence
SDSEVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIGTQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
source organism Listeria monocytogenes serovar 1/2a
publication title 1.32 Angstrom Crystal Structure of Ybbr like Domain of lmo2119 Protein from Listeria monocytogenes.
rcsb
molecule keywords Lmo2119 protein
total genus 18
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2016-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07949 YbbR YbbR-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.30 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2 5hqhA00
2L3UA 5HQHA 3LYWA 2KQ1A 2KPUA 2L5NA
chains in the Genus database with same CATH superfamily
2ZJRS 5IP9C 2KQ1A 2WB1D 4WCES 2YU9C 4IO9S 4C3IC 2O5IA 5DM7S 2JA6C 2A69A 3GTMC 5JVHS 5C3EC 4A3GC 3I4NC 2CW0A 5TMCA 4OIOA 3CF5S 2E2HC 4Q5SA 4A3EC 4A3CC 2NVXC 3H0GC 2ZJPS 3RZOC 4YFXA 4QIWD 3K7AC 4XLPA 1TWFC 4KN4A 4A3KC 4A3FC 4A3BC 4AYBD 5D4DA 1TWGC 4YFNA 2JA7C 4YFKA 4BY1C 4MEXA 1K83C 4WFNS 2R92C 4C3HC 4KMUA 5IYCC 4C3JC 3GTOC 2WAQD 4LK1A 2R7ZC 3GTLC 5HQHA 4OINA 1SFOC 3HOYC 4WF9S 3CQZC 3S2HC 4A3JC 2JA8C 2L3UA 4MEYA 5DM6S 3S16C 2R93C 2L5NA 4BXXC 3M3YC 3S2DC 3HOVC 5IYDC 2O5JA 4NOIA 3I4MC 1Y1VC 2B63C 3LYWA 3EQLA 4OIRA 1I3QC 2PPBA 2NVQC 3HOWC 4G7OA 3PO3C 2PA8D 2PMZD 3S1RC 4LLGA 3FKIC 5C4XC 4LK0A 4OIQA 1IW7A 5C4JC 1WCMC 4XSXA 2E2IC 3M4OC 4A3MC 4BBSC 3GTPC 3S14C 4WFBS 4IOAS 1FEUA 3S17C 2ZJQS 3GTQC 5IP7C 4Y52C 3WODA 5HL7S 4A3DC 4XLNA 2JA5C 4YG2A 4OIPA 1TWHC 4Y7NC 3HOXC 4KN7A 4C2MC 3PIPS 5JVGS 2BE5A 3S15C 3S1MC 4WFAS 4JK1A 2E2JC 2Y0SD 4GZYA 3S1QC 1SMYA 4X6AC 2NVYC 3S1NC 1I6HC 2A6EA 1ZYRA 4BY7C 4MQ9A 3GTKC 4XSZA 4G7HA 2VUMC 2KPUA 4U67S 5IYBC 3RZDC 4A3IC 1TWCC 3GTGC 1BDFA 1YNNA 4ZH4A 3H3VD 3HKZD 3PO2C 3DLLS 1HQMA 4A93C 2NVTC 4QJVA 3HOUC 1I50C 5TMFA 4A3LC 4IOCS 4LJZA 1Y1WC 3HOZC 4BBRC 1YNJA 2A6HA 5FLMC 2A68A 5C44C 1R9TC 3GTJC 3PIOS 1TWAC 2KXYA 4G7ZA 4Q4ZA 1I6VA 3DXJA
chains in the Genus database with same CATH topology
2L3UA 2KXYA 5HQHA 3LYWA 2KQ1A 2KPUA 2L5NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L3U A;  5HQH A;  3LYW A;  2KQ1 A;  2KPU A;  2L5N A; 
#chains in the Genus database with same CATH topology
 2ZJR S;  5IP9 C;  2KQ1 A;  2WB1 D;  4WCE S;  2YU9 C;  4IO9 S;  4C3I C;  2O5I A;  5DM7 S;  2JA6 C;  2A69 A;  3GTM C;  5JVH S;  5C3E C;  4A3G C;  3I4N C;  2CW0 A;  5TMC A;  4OIO A;  3CF5 S;  2E2H C;  4Q5S A;  4A3E C;  4A3C C;  2NVX C;  3H0G C;  2ZJP S;  3RZO C;  4YFX A;  4QIW D;  3K7A C;  4XLP A;  1TWF C;  4KN4 A;  4A3K C;  4A3F C;  4A3B C;  4AYB D;  5D4D A;  1TWG C;  4YFN A;  2JA7 C;  4YFK A;  4BY1 C;  4MEX A;  1K83 C;  4WFN S;  2R92 C;  4C3H C;  4KMU A;  5IYC C;  4C3J C;  3GTO C;  2WAQ D;  4LK1 A;  2R7Z C;  3GTL C;  5HQH A;  4OIN A;  1SFO C;  3HOY C;  4WF9 S;  3CQZ C;  3S2H C;  4A3J C;  2JA8 C;  2L3U A;  4MEY A;  5DM6 S;  3S16 C;  2R93 C;  2L5N A;  4BXX C;  3M3Y C;  3S2D C;  3HOV C;  5IYD C;  2O5J A;  4NOI A;  3I4M C;  1Y1V C;  2B63 C;  3LYW A;  3EQL A;  4OIR A;  1I3Q C;  2PPB A;  2NVQ C;  3HOW C;  4G7O A;  3PO3 C;  2PA8 D;  2PMZ D;  3S1R C;  4LLG A;  3FKI C;  5C4X C;  4LK0 A;  4OIQ A;  1IW7 A;  5C4J C;  1WCM C;  4XSX A;  2E2I C;  3M4O C;  4A3M C;  4BBS C;  3GTP C;  3S14 C;  4WFB S;  4IOA S;  1FEU A;  3S17 C;  2ZJQ S;  3GTQ C;  5IP7 C;  4Y52 C;  3WOD A;  5HL7 S;  4A3D C;  4XLN A;  2JA5 C;  4YG2 A;  4OIP A;  1TWH C;  4Y7N C;  3HOX C;  4KN7 A;  4C2M C;  3PIP S;  5JVG S;  2BE5 A;  3S15 C;  3S1M C;  4WFA S;  4JK1 A;  2E2J C;  2Y0S D;  4GZY A;  3S1Q C;  1SMY A;  4X6A C;  2NVY C;  3S1N C;  1I6H C;  2A6E A;  1ZYR A;  4BY7 C;  4MQ9 A;  3GTK C;  4XSZ A;  4G7H A;  2VUM C;  2KPU A;  4U67 S;  5IYB C;  3RZD C;  4A3I C;  1TWC C;  3GTG C;  1BDF A;  1YNN A;  4ZH4 A;  3H3V D;  3HKZ D;  3PO2 C;  3DLL S;  1HQM A;  4A93 C;  2NVT C;  4QJV A;  3HOU C;  1I50 C;  5TMF A;  4A3L C;  4IOC S;  4LJZ A;  1Y1W C;  3HOZ C;  4BBR C;  1YNJ A;  2A6H A;  5FLM C;  2A68 A;  5C44 C;  1R9T C;  3GTJ C;  3PIO S;  1TWA C;  2KXY A;  4G7Z A;  4Q4Z A;  1I6V A;  3DXJ A; 
#chains in the Genus database with same CATH homology
 2L3U A;  2KXY A;  5HQH A;  3LYW A;  2KQ1 A;  2KPU A;  2L5N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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