1SMYA

Structural basis for transcription regulation by alarmone ppgpp
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
229
structure length
229
Chain Sequence
b'MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for transcription regulation by alarmone ppGpp
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase alpha chain
molecule tags Transferase
total genus 40
structure length 229
sequence length 229
chains with identical sequence B, K, L
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2004-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
A PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
A PF03118 RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 DNA-directed RNA polymerase, insert domain 1smyA02
3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 RNA polymerase, RBP11-like subunit 1smyA01
3FKIC 3H0GC 4OIOA 3S1NC 1ZYRA 5FJ8K 5C4XK 3HOZC 1I50C 2NVXC 5C3EC 1R9TC 2A6HA 5IYCK 4X6AK 3RZOC 4A3KK 3S17K 4QJVA 3S1RC 4XLNA 4GZYA 3EQLA 4XLPA 3HOVK 1TWGK 2E2IK 2JA6C 3M4OC 3GTMC 4KMUA 4BBRC 2B63C 2NVTK 2PA8L 2O5JA 2R7ZC 3S2HC 5FLMK 3GTGK 1SMYA 4OINA 4Y7NC 3PO2K 3HKZL 5C4JC 4C3HK 2YU9K 1SFOC 3S14C 2E2JC 3HOUC 4BXXC 3HOXK 4Q4ZA 5M5YK 3S2DC 3S15K 5IYBC 2JA5K 4BY1C 4BY7C 4C3JK 4A93K 4OIPA 4A3MK 3S1QK 1TWHC 2WAQL 3CQZC 2A6EA 2CW0A 3HOYC 2R92C 3FKIK 4LK1A 4A3BK 2NVYC 4BBSC 4C2MK 2BE5A 1I50K 3GTJK 3I4MC 4QJVB 5C3EK 5M3MK 4A3FK 2JA8K 2VUMK 2A68A 4C3IC 2PPBA 3H3VL 3GTKC 2E2HK 2PMZD 1I3QK 5IP7C 3GTOK 5TMCA 5IP9C 4KN4A 3GTQC 2JA6K 4Y52C 1K83C 3GTPC 1YNJA 4A3LC 1WCMK 4A3EC 4QIWL 3K7AC 4NOIA 2Y0SL 3PO3C 1IW7A 5C44K 2NVQK 4A3CK 3M3YC 5IYDK 4AYBD 4LJZA 4Y7NK 1I6HK 4YFXA 4XSZA 4Q5SA 5C4XC 3S16K 4A3DK 2WB1D 4JK1A 1SFOK 2E2JK 3GTLK 4A3IK 3I4NC 4BXXK 2R93K 5IYCC 3RZDK 1TWCK 4A3KC 3HOWK 3S17C 3HOVC 1TWFK 1TWGC 4A3JK 2E2IC 3DXJA 1TWAK 5M3FK 3S1MK 2NVTC 3H0GK 3S1NK 3CQZK 1Y1WC 3HOZK 5FLMC 2NVXK 4YG2A 3GTGC 2NVYK 5M5XK 1I6VA 2JA7C 1R9TK 3PO2C 3RZOK 2YU9C 3S1RK 2PA8D 2O5IA 4XSXA 4A3GC 4BBRK 2B63K 2JA5C 3GTMK 3M4OK 1Y1VC 4C3JC 4MEXA 3GTQK 2R7ZK 3WODA 4OIQA 4A93C 5TMFA 1K83K 3GTPK 3HKZD 4MEYA 3S2HK 4LK0A 4A3MC 3PO3K 5C4JK 3S14K 4A3BC 3HOUK 4C2MC 4OIRA 4X6AC 3GTJC 2JA8C 2A69A 4MQ9A 4A3FC 5IYBK 2VUMC 3I4NK 3S2DK 4BY1K 4BY7K 2WAQD 2E2HC 4YFKA 1I3QC 3GTOC 1TWHK 3S1MC 2PMZL 4LLGA 3HOYK 2R92K 4G7HA 4G7OA 4BBSK 1WCMC 1Y1WK 4YFNA 1BDFA 1HQMA 5D4DA 5IYDC 2NVQC 4A3CC 4C3HC 5C44C 3H3VD 1XPPA 3I4MK 4ZH4A 2JA7K 1I6HC 3HOXC 4C3IK 3S16C 4A3DC 4AYBL 3GTKK 3GTLC 2R93C 4A3IC 4KN7A 3S15C 5IP7K 4G7ZA 3RZDC 5IP9K 2WB1L 1TWCC 3HOWC 4A3GK 4QIWD 4Y52K 1YNNA 2Y0SD 5M5WK 1Y1VK 4A3LK 4A3EK 1TWFC 3S1QC 3K7AK 4A3JC 1TWAC 3M3YK
chains in the Genus database with same CATH superfamily
4GTDA 3H0GC 2P8TA 5C4XK 2NVXC 5EGEA 1F93A 3OPFA 5IYCK 1XXCA 3EQLA 4XLPA 3HOVK 1TWGK 4KMUA 1V5VA 4KDDA 3H0GA 5CJ9A 4P5AA 2KXYA 3HKZL 4C3HK 1WSRA 4BXXC 4BLBA 2E2HA 3S15K 2JA5K 3TTGA 3TFIA 5JVOA 2Y3PA 4A3MK 3S1QK 2ZJRS 1TWHC 4O2DA 4RMFA 3PIPS 2RH6A 4KM9A 2BE5A 4QJVB 3L4JA 2JA8K 3BUEA 4WILA 2A68A 4WCES 1I3QK 5IP7C 5IP9C 4G0UA 4Y52C 1K83C 3GTPC 5TJ3A 3A8IA 4KC6A 3K7AC 1JQWA 2Y0SL 4WJ3M 4Y7NK 4YFXA 4A3DK 4JK1A 2R93K 2FQOA 4G0VA 1K83A 3GTPA 4A3JK 2XCQA 2NVTC 3H0GK 3OEPA 1Y1WC 2NVXK 4BKWA 4YG2A 1DCPA 3GTGC 5M5XK 1ZVUA 3AD7C 1WQFA 4KASA 1AB4A 4XSXA 1Y1VC 4MEXA 3WODA 2KQ1A 4MEYA 1Y1WA 4LQYA 1G51A 3GTGA 1GE9A 5JVGS 1XZQA 4OIRA 1DCOA 3GTJC 4A3FC 2W7VA 1J98A 3AD8C 2WAQD 1Y1VA 1TWHK 3JSTA 4KM8A 4G7HA 1WCMC 1HQMA 5D4DA 4C3HC 2L3UA 3GTJA 1I6HC 1DD5A 1WSVA 1WIHA 4AYBL 3GTLC 1J6WA 3S15C 5IP7K 5IP9K 1XZPB 4A3GK 4Y52K 1YNNA 1XXBA 5M5WK 2D6FC 1TWFC 3S1QC 3LAJA 3K7AK 3S1MC 1O29A 1TWAC 1WCMA 1ZYRA 3N3YA 3MMLB 2GSOA 3RZOC 3AQPA 4GZYA 3N0CA 4C45A 3GTMC 4BBRC 2NVTK 1TWAA 2PA8L 2R7ZC 1F7UA 3GTGK 1SMYA 4OINA 3GEHA 4Y7NC 4GT9A 5JFEA 2ZUFA 3AH5A 4P9SA 4BY1C 3GTMA 3FHZA 2R7ZA 3VA7A 1F7VA 4WFAS 2A6EA 1O28A 4BBSC 3GTJK 2R93A 5C3EK 4A3FK 2RGRA 1O2BA 3H3VL 2XCOA 1VH2A 4PABA 1J6XA 2GSUA 5EGHA 1WCMK 2NVXA 4NOIA 1IW7A 2FQTA 1I6HK 2ZJQS 4Q5SA 4XSZA 4KB4A 1B4BA 3T01A 2WB1D 3GTLK 4M1XA 4KMDA 1TWFK 1ZXOA 1XXAA 5DM7S 3S1MK 2E2IC 1TWAK 5M3FK 3CQZK 5FLMC 3LAPA 2NVYK 2ZJPS 4WF9S 3RZOK 2YU9C 4FZBA 4A3GC 3FOFA 4BBRK 3GTMK 1TWHA 3GSIA 4GTLA 2E2IA 4C3JC 2R7ZK 4A93C 4LK0A 3PO3K 1WORA 4A3BC 4G0WA 2YU9A 5IORA 1JVIA 1PJ6A 2VUMC 2PHCB 1ISEA 4FM9A 4BY1K 4YFKA 3V4GA 3ERED 1EFWA 1USMA 4KARA 4LLGA 3G4AA 4G7OA 4BBSK 1XPPA 5IYDC 2NVQC 1DCHA 3L4KA 1RU0A 1BGWA 3S16C 5IOQA 4A3IC 4GFQA 3GDZA 4GTFA 1TWCC 3HOWC 4QIWD 5L46A 2CFAB 5FJ8K 4IOCS 5C3EC 1BJTA 1R9TC 1O2AA 3S1RC 1TWCA 2GSNA 3IPJA 2E2IK 3M4OC 2B63C 1WQHA 2O5JA 4J3NA 4U67S 5FLMK 5DM6S 1WOPA 4BLAA 2YU9K 1R9TA 3S14C 3HOUC 2ZFZA 3LPXA 5M5YK 1IE0A 3S2DC 5IYBC 4BY7C 4C3JK 2B63A 4A93K 1YCLA 4OIPA 2WAQL 3CQZC 2CW0A 2R92C 3FKIK 4LK1A 4A3BK 2NVYC 1ZBSA 1I50K 3GTLA 3LYWA 3I4MC 2VUMK 1VGXA 4C3IC 2PPBA 3TFJA 3N0BA 2PMZD 1TWFA 1B4AA 1EH1A 2GAHC 1O25A 2JA6K 4A3LC 3CQZA 1YX2A 2R92A 5IYDK 2NVQK 3PO3C 1XZPA 2NVYA 3GEIA 3M3YC 4LJZA 3DLLS 2JH3A 3S16K 5HL7S 1EQRA 2GAGC 1SFOK 2E2JK 1O26A 4A3IK 5HL8A 1TWCK 4A3KC 3HOWK 3S17C 3DXJA 4KATA 4GTCA 3GEEA 1R9TK 3PO2C 3FOEA 3SZYA 3S1RK 1IS1A 5IOSA 3QX3A 3M4OK 2B63K 3HXAA 3AQOA 3GTQK 4OIQA 4P5BA 3HKZD 2V6SA 4GTBA 3S14K 3HOUK 4C2MC 3T00A 3S2DK 1JOEA 5IYBK 3I4NK 1VLOA 4BY7K 2E2HC 3A8KA 4KAWX 3GTOC 3SZZA 1EK8A 1WOOA 2R92K 4KMHA 4YFNA 1BDFA 2KPUA 4A3CC 1BS2A 3I4MK 5C44C 1WOSA 2JA7K 4C3IK 4XCHA 1EI6A 4GTAA 2V6TA 4G7ZA 3RZDC 2WB1L 2ZUEA 4WJ4A 3GTOA 2Y0SD 4A3LK 2EBBA 4AH6A 5JVHS 3M3YK 3FKIC 4OIOA 3S1NC 1KQ4A 3PIOS 3HOZC 1I50C 5E68A 4IOAS 3A8JA 3NUHA 4X6AK 2A6HA 4A3KK 3S17K 1ZQ1C 4QJVA 1C0AA 4XLNA 4LR2A 2JA6C 4WFBS 3ADAC 3S2HC 3FKIA 4WFNS 1I50A 3PO2K 3GIRA 5C4JC 2VUMA 4GTEA 1SFOC 2E2JC 3HOXK 4Q4ZA 3Q3QA 5CHPA 1USOA 2JA6A 2V6UA 3AD9C 1XZQB 1J6VA 1INNA 5HQHA 3HOYC 2P5MA 4C2MK 1SFOA 5M3MK 2XCRB 1O27A 3GTKC 2E2HK 3GTOK 5TMCA 4KN4A 3GTQC 4KMAA 1YNJA 4A3EC 1WQGA 4QIWL 4A3CK 1O2FB 5C44K 3TFHA 4AYBD 2CFAA 1VJEA 5C4XC 1PJ5A 4BXXK 1FEUA 3I4NC 3GTKA 5IYCC 4DDQA 3RZDK 1IBAA 3GTQA 3HOVC 1TWGC 3S1NK 1UV7A 3HOZK 4PAAA 1I6VA 2JA7C 3CF5S 2L5NA 1X31C 4KB2A 2PA8D 2O5IA 1F9NA 2JA5C 1TWGA 3OREA 3S2HK 1K83K 3GTPK 5TMFA 4A3MC 5C4JK 2JA7A 1O24A 4ILDA 3T02A 4X6AC 2JA8C 1HI9A 2A69A 4MQ9A 5IOTA 2JA5A 1I3QC 4LOWA 3CAGA 2PMZL 3HOYK 1Y1WK 1IQ0A 3H3VD 1PJ7A 3S0XA 3BP3A 4ZH4A 3G4CA 3HOXC 4A3DC 2KWAA 3GTKK 1L0WA 2R93C 4KN7A 1IL2A 1VRQC 4IO9S 1I3QA 1Y1VK 4A3EK 4A3JC 3BP8C
chains in the Genus database with same CATH topology
3FKIC 3H0GC 4OIOA 3S1NC 1ZYRA 5FJ8K 5C4XK 3HOZC 1I50C 2NVXC 5C3EC 1R9TC 2A6HA 5IYCK 4X6AK 3RZOC 4A3KK 3S17K 4QJVA 3S1RC 4XLNA 4GZYA 3EQLA 4XLPA 3HOVK 1TWGK 2E2IK 2JA6C 3M4OC 3GTMC 4KMUA 4BBRC 2B63C 2NVTK 2PA8L 2O5JA 2R7ZC 3S2HC 5FLMK 3GTGK 1SMYA 4OINA 4Y7NC 3PO2K 3HKZL 5C4JC 4C3HK 2YU9K 1SFOC 3S14C 2E2JC 3HOUC 4BXXC 3HOXK 4Q4ZA 5M5YK 3S2DC 3S15K 5IYBC 2JA5K 4BY1C 4BY7C 4C3JK 4A93K 4OIPA 4A3MK 3S1QK 1TWHC 2WAQL 3CQZC 2A6EA 2CW0A 3HOYC 2R92C 3FKIK 4LK1A 4A3BK 2NVYC 4BBSC 4C2MK 2BE5A 1I50K 3GTJK 3I4MC 4QJVB 5C3EK 5M3MK 4A3FK 2JA8K 2VUMK 2A68A 4C3IC 2PPBA 3H3VL 3GTKC 2E2HK 2PMZD 1I3QK 5IP7C 3GTOK 5TMCA 5IP9C 4KN4A 3GTQC 2JA6K 4Y52C 1K83C 3GTPC 1YNJA 4A3LC 1WCMK 4A3EC 4QIWL 3K7AC 4NOIA 2Y0SL 3PO3C 1IW7A 5C44K 2NVQK 4A3CK 3M3YC 5IYDK 4AYBD 4LJZA 4Y7NK 1I6HK 4YFXA 4XSZA 4Q5SA 5C4XC 3S16K 4A3DK 2WB1D 4JK1A 1SFOK 2E2JK 3GTLK 4A3IK 3I4NC 4BXXK 2R93K 5IYCC 3RZDK 1TWCK 4A3KC 3HOWK 3S17C 3HOVC 1TWFK 1TWGC 4A3JK 2E2IC 3DXJA 1TWAK 5M3FK 3S1MK 2NVTC 3H0GK 3S1NK 3CQZK 1Y1WC 3HOZK 5FLMC 2NVXK 4YG2A 3GTGC 2NVYK 5M5XK 1I6VA 2JA7C 1R9TK 3PO2C 3RZOK 2YU9C 3S1RK 2PA8D 2O5IA 4XSXA 4A3GC 4BBRK 2B63K 2JA5C 3GTMK 3M4OK 1Y1VC 4C3JC 4MEXA 3GTQK 2R7ZK 3WODA 4OIQA 4A93C 5TMFA 1K83K 3GTPK 3HKZD 4MEYA 3S2HK 4LK0A 4A3MC 3PO3K 5C4JK 3S14K 4A3BC 3HOUK 4C2MC 4OIRA 4X6AC 3GTJC 2JA8C 2A69A 4MQ9A 4A3FC 5IYBK 2VUMC 3I4NK 3S2DK 4BY1K 4BY7K 2WAQD 2E2HC 4YFKA 1I3QC 3GTOC 1TWHK 3S1MC 2PMZL 4LLGA 3HOYK 2R92K 4G7HA 4G7OA 4BBSK 1WCMC 1Y1WK 4YFNA 1BDFA 1HQMA 5D4DA 5IYDC 2NVQC 4A3CC 4C3HC 5C44C 3H3VD 1XPPA 3I4MK 4ZH4A 2JA7K 1I6HC 3HOXC 4C3IK 3S16C 4A3DC 4AYBL 3GTKK 3GTLC 2R93C 4A3IC 4KN7A 3S15C 5IP7K 4G7ZA 3RZDC 5IP9K 2WB1L 1TWCC 3HOWC 4A3GK 4QIWD 4Y52K 1YNNA 2Y0SD 5M5WK 1Y1VK 4A3LK 4A3EK 1TWFC 3S1QC 3K7AK 4A3JC 1TWAC 3M3YK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FKI C;  3H0G C;  4OIO A;  3S1N C;  1ZYR A;  5FJ8 K;  5C4X K;  3HOZ C;  1I50 C;  2NVX C;  5C3E C;  1R9T C;  2A6H A;  5IYC K;  4X6A K;  3RZO C;  4A3K K;  3S17 K;  4QJV A;  3S1R C;  4XLN A;  4GZY A;  3EQL A;  4XLP A;  3HOV K;  1TWG K;  2E2I K;  2JA6 C;  3M4O C;  3GTM C;  4KMU A;  4BBR C;  2B63 C;  2NVT K;  2PA8 L;  2O5J A;  2R7Z C;  3S2H C;  5FLM K;  3GTG K;  1SMY A;  4OIN A;  4Y7N C;  3PO2 K;  3HKZ L;  5C4J C;  4C3H K;  2YU9 K;  1SFO C;  3S14 C;  2E2J C;  3HOU C;  4BXX C;  3HOX K;  4Q4Z A;  5M5Y K;  3S2D C;  3S15 K;  5IYB C;  2JA5 K;  4BY1 C;  4BY7 C;  4C3J K;  4A93 K;  4OIP A;  4A3M K;  3S1Q K;  1TWH C;  2WAQ L;  3CQZ C;  2A6E A;  2CW0 A;  3HOY C;  2R92 C;  3FKI K;  4LK1 A;  4A3B K;  2NVY C;  4BBS C;  4C2M K;  2BE5 A;  1I50 K;  3GTJ K;  3I4M C;  4QJV B;  5C3E K;  5M3M K;  4A3F K;  2JA8 K;  2VUM K;  2A68 A;  4C3I C;  2PPB A;  3H3V L;  3GTK C;  2E2H K;  2PMZ D;  1I3Q K;  5IP7 C;  3GTO K;  5TMC A;  5IP9 C;  4KN4 A;  3GTQ C;  2JA6 K;  4Y52 C;  1K83 C;  3GTP C;  1YNJ A;  4A3L C;  1WCM K;  4A3E C;  4QIW L;  3K7A C;  4NOI A;  2Y0S L;  3PO3 C;  1IW7 A;  5C44 K;  2NVQ K;  4A3C K;  3M3Y C;  5IYD K;  4AYB D;  4LJZ A;  4Y7N K;  1I6H K;  4YFX A;  4XSZ A;  4Q5S A;  5C4X C;  3S16 K;  4A3D K;  2WB1 D;  4JK1 A;  1SFO K;  2E2J K;  3GTL K;  4A3I K;  3I4N C;  4BXX K;  2R93 K;  5IYC C;  3RZD K;  1TWC K;  4A3K C;  3HOW K;  3S17 C;  3HOV C;  1TWF K;  1TWG C;  4A3J K;  2E2I C;  3DXJ A;  1TWA K;  5M3F K;  3S1M K;  2NVT C;  3H0G K;  3S1N K;  3CQZ K;  1Y1W C;  3HOZ K;  5FLM C;  2NVX K;  4YG2 A;  3GTG C;  2NVY K;  5M5X K;  1I6V A;  2JA7 C;  1R9T K;  3PO2 C;  3RZO K;  2YU9 C;  3S1R K;  2PA8 D;  2O5I A;  4XSX A;  4A3G C;  4BBR K;  2B63 K;  2JA5 C;  3GTM K;  3M4O K;  1Y1V C;  4C3J C;  4MEX A;  3GTQ K;  2R7Z K;  3WOD A;  4OIQ A;  4A93 C;  5TMF A;  1K83 K;  3GTP K;  3HKZ D;  4MEY A;  3S2H K;  4LK0 A;  4A3M C;  3PO3 K;  5C4J K;  3S14 K;  4A3B C;  3HOU K;  4C2M C;  4OIR A;  4X6A C;  3GTJ C;  2JA8 C;  2A69 A;  4MQ9 A;  4A3F C;  5IYB K;  2VUM C;  3I4N K;  3S2D K;  4BY1 K;  4BY7 K;  2WAQ D;  2E2H C;  4YFK A;  1I3Q C;  3GTO C;  1TWH K;  3S1M C;  2PMZ L;  4LLG A;  3HOY K;  2R92 K;  4G7H A;  4G7O A;  4BBS K;  1WCM C;  1Y1W K;  4YFN A;  1BDF A;  1HQM A;  5D4D A;  5IYD C;  2NVQ C;  4A3C C;  4C3H C;  5C44 C;  3H3V D;  1XPP A;  3I4M K;  4ZH4 A;  2JA7 K;  1I6H C;  3HOX C;  4C3I K;  3S16 C;  4A3D C;  4AYB L;  3GTK K;  3GTL C;  2R93 C;  4A3I C;  4KN7 A;  3S15 C;  5IP7 K;  4G7Z A;  3RZD C;  5IP9 K;  2WB1 L;  1TWC C;  3HOW C;  4A3G K;  4QIW D;  4Y52 K;  1YNN A;  2Y0S D;  5M5W K;  1Y1V K;  4A3L K;  4A3E K;  1TWF C;  3S1Q C;  3K7A K;  4A3J C;  1TWA C;  3M3Y K; 
#chains in the Genus database with same CATH topology
 4GTD A;  3H0G C;  2P8T A;  5C4X K;  2NVX C;  5EGE A;  1F93 A;  3OPF A;  5IYC K;  1XXC A;  3EQL A;  4XLP A;  3HOV K;  1TWG K;  4KMU A;  1V5V A;  4KDD A;  3H0G A;  5CJ9 A;  4P5A A;  2KXY A;  3HKZ L;  4C3H K;  1WSR A;  4BXX C;  4BLB A;  2E2H A;  3S15 K;  2JA5 K;  3TTG A;  3TFI A;  5JVO A;  2Y3P A;  4A3M K;  3S1Q K;  2ZJR S;  1TWH C;  4O2D A;  4RMF A;  3PIP S;  2RH6 A;  4KM9 A;  2BE5 A;  4QJV B;  3L4J A;  2JA8 K;  3BUE A;  4WIL A;  2A68 A;  4WCE S;  1I3Q K;  5IP7 C;  5IP9 C;  4G0U A;  4Y52 C;  1K83 C;  3GTP C;  5TJ3 A;  3A8I A;  4KC6 A;  3K7A C;  1JQW A;  2Y0S L;  4WJ3 M;  4Y7N K;  4YFX A;  4A3D K;  4JK1 A;  2R93 K;  2FQO A;  4G0V A;  1K83 A;  3GTP A;  4A3J K;  2XCQ A;  2NVT C;  3H0G K;  3OEP A;  1Y1W C;  2NVX K;  4BKW A;  4YG2 A;  1DCP A;  3GTG C;  5M5X K;  1ZVU A;  3AD7 C;  1WQF A;  4KAS A;  1AB4 A;  4XSX A;  1Y1V C;  4MEX A;  3WOD A;  2KQ1 A;  4MEY A;  1Y1W A;  4LQY A;  1G51 A;  3GTG A;  1GE9 A;  5JVG S;  1XZQ A;  4OIR A;  1DCO A;  3GTJ C;  4A3F C;  2W7V A;  1J98 A;  3AD8 C;  2WAQ D;  1Y1V A;  1TWH K;  3JST A;  4KM8 A;  4G7H A;  1WCM C;  1HQM A;  5D4D A;  4C3H C;  2L3U A;  3GTJ A;  1I6H C;  1DD5 A;  1WSV A;  1WIH A;  4AYB L;  3GTL C;  1J6W A;  3S15 C;  5IP7 K;  5IP9 K;  1XZP B;  4A3G K;  4Y52 K;  1YNN A;  1XXB A;  5M5W K;  2D6F C;  1TWF C;  3S1Q C;  3LAJ A;  3K7A K;  3S1M C;  1O29 A;  1TWA C;  1WCM A;  1ZYR A;  3N3Y A;  3MML B;  2GSO A;  3RZO C;  3AQP A;  4GZY A;  3N0C A;  4C45 A;  3GTM C;  4BBR C;  2NVT K;  1TWA A;  2PA8 L;  2R7Z C;  1F7U A;  3GTG K;  1SMY A;  4OIN A;  3GEH A;  4Y7N C;  4GT9 A;  5JFE A;  2ZUF A;  3AH5 A;  4P9S A;  4BY1 C;  3GTM A;  3FHZ A;  2R7Z A;  3VA7 A;  1F7V A;  4WFA S;  2A6E A;  1O28 A;  4BBS C;  3GTJ K;  2R93 A;  5C3E K;  4A3F K;  2RGR A;  1O2B A;  3H3V L;  2XCO A;  1VH2 A;  4PAB A;  1J6X A;  2GSU A;  5EGH A;  1WCM K;  2NVX A;  4NOI A;  1IW7 A;  2FQT A;  1I6H K;  2ZJQ S;  4Q5S A;  4XSZ A;  4KB4 A;  1B4B A;  3T01 A;  2WB1 D;  3GTL K;  4M1X A;  4KMD A;  1TWF K;  1ZXO A;  1XXA A;  5DM7 S;  3S1M K;  2E2I C;  1TWA K;  5M3F K;  3CQZ K;  5FLM C;  3LAP A;  2NVY K;  2ZJP S;  4WF9 S;  3RZO K;  2YU9 C;  4FZB A;  4A3G C;  3FOF A;  4BBR K;  3GTM K;  1TWH A;  3GSI A;  4GTL A;  2E2I A;  4C3J C;  2R7Z K;  4A93 C;  4LK0 A;  3PO3 K;  1WOR A;  4A3B C;  4G0W A;  2YU9 A;  5IOR A;  1JVI A;  1PJ6 A;  2VUM C;  2PHC B;  1ISE A;  4FM9 A;  4BY1 K;  4YFK A;  3V4G A;  3ERE D;  1EFW A;  1USM A;  4KAR A;  4LLG A;  3G4A A;  4G7O A;  4BBS K;  1XPP A;  5IYD C;  2NVQ C;  1DCH A;  3L4K A;  1RU0 A;  1BGW A;  3S16 C;  5IOQ A;  4A3I C;  4GFQ A;  3GDZ A;  4GTF A;  1TWC C;  3HOW C;  4QIW D;  5L46 A;  2CFA B;  5FJ8 K;  4IOC S;  5C3E C;  1BJT A;  1R9T C;  1O2A A;  3S1R C;  1TWC A;  2GSN A;  3IPJ A;  2E2I K;  3M4O C;  2B63 C;  1WQH A;  2O5J A;  4J3N A;  4U67 S;  5FLM K;  5DM6 S;  1WOP A;  4BLA A;  2YU9 K;  1R9T A;  3S14 C;  3HOU C;  2ZFZ A;  3LPX A;  5M5Y K;  1IE0 A;  3S2D C;  5IYB C;  4BY7 C;  4C3J K;  2B63 A;  4A93 K;  1YCL A;  4OIP A;  2WAQ L;  3CQZ C;  2CW0 A;  2R92 C;  3FKI K;  4LK1 A;  4A3B K;  2NVY C;  1ZBS A;  1I50 K;  3GTL A;  3LYW A;  3I4M C;  2VUM K;  1VGX A;  4C3I C;  2PPB A;  3TFJ A;  3N0B A;  2PMZ D;  1TWF A;  1B4A A;  1EH1 A;  2GAH C;  1O25 A;  2JA6 K;  4A3L C;  3CQZ A;  1YX2 A;  2R92 A;  5IYD K;  2NVQ K;  3PO3 C;  1XZP A;  2NVY A;  3GEI A;  3M3Y C;  4LJZ A;  3DLL S;  2JH3 A;  3S16 K;  5HL7 S;  1EQR A;  2GAG C;  1SFO K;  2E2J K;  1O26 A;  4A3I K;  5HL8 A;  1TWC K;  4A3K C;  3HOW K;  3S17 C;  3DXJ A;  4KAT A;  4GTC A;  3GEE A;  1R9T K;  3PO2 C;  3FOE A;  3SZY A;  3S1R K;  1IS1 A;  5IOS A;  3QX3 A;  3M4O K;  2B63 K;  3HXA A;  3AQO A;  3GTQ K;  4OIQ A;  4P5B A;  3HKZ D;  2V6S A;  4GTB A;  3S14 K;  3HOU K;  4C2M C;  3T00 A;  3S2D K;  1JOE A;  5IYB K;  3I4N K;  1VLO A;  4BY7 K;  2E2H C;  3A8K A;  4KAW X;  3GTO C;  3SZZ A;  1EK8 A;  1WOO A;  2R92 K;  4KMH A;  4YFN A;  1BDF A;  2KPU A;  4A3C C;  1BS2 A;  3I4M K;  5C44 C;  1WOS A;  2JA7 K;  4C3I K;  4XCH A;  1EI6 A;  4GTA A;  2V6T A;  4G7Z A;  3RZD C;  2WB1 L;  2ZUE A;  4WJ4 A;  3GTO A;  2Y0S D;  4A3L K;  2EBB A;  4AH6 A;  5JVH S;  3M3Y K;  3FKI C;  4OIO A;  3S1N C;  1KQ4 A;  3PIO S;  3HOZ C;  1I50 C;  5E68 A;  4IOA S;  3A8J A;  3NUH A;  4X6A K;  2A6H A;  4A3K K;  3S17 K;  1ZQ1 C;  4QJV A;  1C0A A;  4XLN A;  4LR2 A;  2JA6 C;  4WFB S;  3ADA C;  3S2H C;  3FKI A;  4WFN S;  1I50 A;  3PO2 K;  3GIR A;  5C4J C;  2VUM A;  4GTE A;  1SFO C;  2E2J C;  3HOX K;  4Q4Z A;  3Q3Q A;  5CHP A;  1USO A;  2JA6 A;  2V6U A;  3AD9 C;  1XZQ B;  1J6V A;  1INN A;  5HQH A;  3HOY C;  2P5M A;  4C2M K;  1SFO A;  5M3M K;  2XCR B;  1O27 A;  3GTK C;  2E2H K;  3GTO K;  5TMC A;  4KN4 A;  3GTQ C;  4KMA A;  1YNJ A;  4A3E C;  1WQG A;  4QIW L;  4A3C K;  1O2F B;  5C44 K;  3TFH A;  4AYB D;  2CFA A;  1VJE A;  5C4X C;  1PJ5 A;  4BXX K;  1FEU A;  3I4N C;  3GTK A;  5IYC C;  4DDQ A;  3RZD K;  1IBA A;  3GTQ A;  3HOV C;  1TWG C;  3S1N K;  1UV7 A;  3HOZ K;  4PAA A;  1I6V A;  2JA7 C;  3CF5 S;  2L5N A;  1X31 C;  4KB2 A;  2PA8 D;  2O5I A;  1F9N A;  2JA5 C;  1TWG A;  3ORE A;  3S2H K;  1K83 K;  3GTP K;  5TMF A;  4A3M C;  5C4J K;  2JA7 A;  1O24 A;  4ILD A;  3T02 A;  4X6A C;  2JA8 C;  1HI9 A;  2A69 A;  4MQ9 A;  5IOT A;  2JA5 A;  1I3Q C;  4LOW A;  3CAG A;  2PMZ L;  3HOY K;  1Y1W K;  1IQ0 A;  3H3V D;  1PJ7 A;  3S0X A;  3BP3 A;  4ZH4 A;  3G4C A;  3HOX C;  4A3D C;  2KWA A;  3GTK K;  1L0W A;  2R93 C;  4KN7 A;  1IL2 A;  1VRQ C;  4IO9 S;  1I3Q A;  1Y1V K;  4A3E K;  4A3J C;  3BP8 C; 
#chains in the Genus database with same CATH homology
 3FKI C;  3H0G C;  4OIO A;  3S1N C;  1ZYR A;  5FJ8 K;  5C4X K;  3HOZ C;  1I50 C;  2NVX C;  5C3E C;  1R9T C;  2A6H A;  5IYC K;  4X6A K;  3RZO C;  4A3K K;  3S17 K;  4QJV A;  3S1R C;  4XLN A;  4GZY A;  3EQL A;  4XLP A;  3HOV K;  1TWG K;  2E2I K;  2JA6 C;  3M4O C;  3GTM C;  4KMU A;  4BBR C;  2B63 C;  2NVT K;  2PA8 L;  2O5J A;  2R7Z C;  3S2H C;  5FLM K;  3GTG K;  1SMY A;  4OIN A;  4Y7N C;  3PO2 K;  3HKZ L;  5C4J C;  4C3H K;  2YU9 K;  1SFO C;  3S14 C;  2E2J C;  3HOU C;  4BXX C;  3HOX K;  4Q4Z A;  5M5Y K;  3S2D C;  3S15 K;  5IYB C;  2JA5 K;  4BY1 C;  4BY7 C;  4C3J K;  4A93 K;  4OIP A;  4A3M K;  3S1Q K;  1TWH C;  2WAQ L;  3CQZ C;  2A6E A;  2CW0 A;  3HOY C;  2R92 C;  3FKI K;  4LK1 A;  4A3B K;  2NVY C;  4BBS C;  4C2M K;  2BE5 A;  1I50 K;  3GTJ K;  3I4M C;  4QJV B;  5C3E K;  5M3M K;  4A3F K;  2JA8 K;  2VUM K;  2A68 A;  4C3I C;  2PPB A;  3H3V L;  3GTK C;  2E2H K;  2PMZ D;  1I3Q K;  5IP7 C;  3GTO K;  5TMC A;  5IP9 C;  4KN4 A;  3GTQ C;  2JA6 K;  4Y52 C;  1K83 C;  3GTP C;  1YNJ A;  4A3L C;  1WCM K;  4A3E C;  4QIW L;  3K7A C;  4NOI A;  2Y0S L;  3PO3 C;  1IW7 A;  5C44 K;  2NVQ K;  4A3C K;  3M3Y C;  5IYD K;  4AYB D;  4LJZ A;  4Y7N K;  1I6H K;  4YFX A;  4XSZ A;  4Q5S A;  5C4X C;  3S16 K;  4A3D K;  2WB1 D;  4JK1 A;  1SFO K;  2E2J K;  3GTL K;  4A3I K;  3I4N C;  4BXX K;  2R93 K;  5IYC C;  3RZD K;  1TWC K;  4A3K C;  3HOW K;  3S17 C;  3HOV C;  1TWF K;  1TWG C;  4A3J K;  2E2I C;  3DXJ A;  1TWA K;  5M3F K;  3S1M K;  2NVT C;  3H0G K;  3S1N K;  3CQZ K;  1Y1W C;  3HOZ K;  5FLM C;  2NVX K;  4YG2 A;  3GTG C;  2NVY K;  5M5X K;  1I6V A;  2JA7 C;  1R9T K;  3PO2 C;  3RZO K;  2YU9 C;  3S1R K;  2PA8 D;  2O5I A;  4XSX A;  4A3G C;  4BBR K;  2B63 K;  2JA5 C;  3GTM K;  3M4O K;  1Y1V C;  4C3J C;  4MEX A;  3GTQ K;  2R7Z K;  3WOD A;  4OIQ A;  4A93 C;  5TMF A;  1K83 K;  3GTP K;  3HKZ D;  4MEY A;  3S2H K;  4LK0 A;  4A3M C;  3PO3 K;  5C4J K;  3S14 K;  4A3B C;  3HOU K;  4C2M C;  4OIR A;  4X6A C;  3GTJ C;  2JA8 C;  2A69 A;  4MQ9 A;  4A3F C;  5IYB K;  2VUM C;  3I4N K;  3S2D K;  4BY1 K;  4BY7 K;  2WAQ D;  2E2H C;  4YFK A;  1I3Q C;  3GTO C;  1TWH K;  3S1M C;  2PMZ L;  4LLG A;  3HOY K;  2R92 K;  4G7H A;  4G7O A;  4BBS K;  1WCM C;  1Y1W K;  4YFN A;  1BDF A;  1HQM A;  5D4D A;  5IYD C;  2NVQ C;  4A3C C;  4C3H C;  5C44 C;  3H3V D;  1XPP A;  3I4M K;  4ZH4 A;  2JA7 K;  1I6H C;  3HOX C;  4C3I K;  3S16 C;  4A3D C;  4AYB L;  3GTK K;  3GTL C;  2R93 C;  4A3I C;  4KN7 A;  3S15 C;  5IP7 K;  4G7Z A;  3RZD C;  5IP9 K;  2WB1 L;  1TWC C;  3HOW C;  4A3G K;  4QIW D;  4Y52 K;  1YNN A;  2Y0S D;  5M5W K;  1Y1V K;  4A3L K;  4A3E K;  1TWF C;  3S1Q C;  3K7A K;  4A3J C;  1TWA C;  3M3Y K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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