1SMYA

Structural basis for transcription regulation by alarmone ppgpp
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
229
structure length
229
Chain Sequence
MLDSKLKAPVFTVRTQGREYGEFVLEPLERGFGVTLGNPLRRILLSSIPGTAVTSVYIEDVLHEFSTIPGVKEDVVEIILNLKELVVRFLNPSLQTVTLLLKAEGPKEVKARDFLPVADVEIMNPDLHIATLEEGGRLNMEVRVDRGVGYVPAEKHGIKDRINAIPVDAVFSPVRRVAFQVEDTRLGQRTDLDKLTLRIWTDGSVTPLEALNQAVEILREHLTYFSNPQ
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
publication title Structural basis for transcription regulation by alarmone ppGpp
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase alpha chain
total genus 40
structure length 229
sequence length 229
chains with identical sequence B, K, L
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2004-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01000 RNA_pol_A_bac RNA polymerase Rpb3/RpoA insert domain
A PF01193 RNA_pol_L RNA polymerase Rpb3/Rpb11 dimerisation domain
A PF03118 RNA_pol_A_CTD Bacterial RNA polymerase, alpha chain C terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.12 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 DNA-directed RNA polymerase, insert domain 1smyA02
3.30.1360.10 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 RNA polymerase, RBP11-like subunit 1smyA01
3M4OK 2WAQD 3GTLK 2A68A 3HOZK 3GTKK 4C3IC 3RZOC 3PO3C 2JA5K 1TWAC 3HOWC 3HOUC 2JA8K 4A3CC 3GTGC 5C4JK 2E2IC 4A3JC 3I4NC 5IP7K 4NOIA 5TMCA 1Y1WK 4Y52C 4BY1K 3S2DK 4BBRK 3S1QC 3S2HC 3S1MC 3GTJK 2NVQK 4A3KC 2NVTK 4XLNA 1I50K 5C3EK 3S1RK 1TWCC 4XSXA 3GTPK 5IP9C 1WCMC 3RZDC 1Y1VK 2WAQL 2E2HK 2NVXC 3M3YC 3H3VD 4C3JK 3HOYK 1I3QC 4A3FC 3PO2C 3S14C 2O5JA 4JK1A 3CQZC 1TWFK 5FLMK 1K83C 1TWGC 4BXXK 2PPBA 2PA8L 5C4XK 2NVYC 3HOXK 1SFOK 3S17K 1TWHK 2E2JC 2VUMC 5IYDK 4C3IK 4GZYA 5IYBK 2B63C 3S15C 4A3GC 2JA6K 2PA8D 5M5YK 3GTMK 4XLPA 5C44K 1YNNA 1TWAK 4C3HC 3HOWK 3H0GK 4A3DK 4BY7C 4BBSK 2WB1D 2A6HA 4A3JK 4Q4ZA 4Y52K 3I4MC 2YU9C 5IYCK 3H3VL 1R9TK 4KN4A 3S1NK 3GTOC 3HOVC 3WODA 4A93K 4OIOA 1IW7A 3GTLC 3S16K 4G7HA 4A3IC 4A3LC 3HOZC 3GTKC 3K7AK 4QJVB 4YFXA 4OIPA 4A3BK 4KN7A 2R93K 2JA5C 4MQ9A 2JA7C 3GTQC 3RZDK 3DXJA 4A3MK 1I6VA 4QIWL 2Y0SL 1I6HK 3FKIK 1XPPA 4C2MK 4YG2A 4Y7NK 5C4JC 3M3YK 3S2DC 5IP7C 4YFKA 1Y1WC 4BY1C 3CQZK 4AYBL 2R7ZK 4LK0A 2CW0A 4BBRC 1TWGK 1BDFA 4QIWD 2Y0SD 4A3EC 2WB1L 3GTJC 2NVQC 5M5WK 3RZOK 2NVTC 3PO3K 1I50C 5C3EC 5M3MK 3GTPC 4MEYA 4AYBD 2VUMK 4XSZA 1Y1VC 3HOUK 3HKZL 4MEXA 2E2HC 4A3CK 1HQMA 3GTGK 2E2IK 1ZYRA 4C3JC 3I4NK 2R92C 2PMZD 4C3HK 5D4DA 4X6AC 1TWFC 5FLMC 5TMFA 1YNJA 3S1QK 3S2HK 3S1MK 4Q5SA 3M4OC 2YU9K 3HKZD 5C4XC 4A3KK 3HOXC 3GTOK 1SMYA 4OINA 1TWCK 1TWHC 5IP9K 1WCMK 5IYDC 4A3IK 4A3LK 4YFNA 2BE5A 5IYBC 2NVXK 4LJZA 4OIRA 2JA8C 2JA6C 3GTQK 5M5XK 3GTMC 2JA7K 5C44C 1I3QK 4A3FK 3PO2K 3S14K 3H0GC 4A3DC 4BBSC 1K83K 5FJ8K 5M3FK 3EQLA 4KMUA 2NVYK 5IYCC 1R9TC 2PMZL 4LLGA 3S1NC 3S1RC 2E2JK 4A93C 4A3EK 3S16C 3K7AC 4A3BC 4G7OA 4G7ZA 2R93C 2B63K 3S15K 4A3GK 4QJVA 4OIQA 3HOYC 4A3MC 4BY7K 1I6HC 3FKIC 4C2MC 4Y7NC 2R92K 4X6AK 4ZH4A 4BXXC 3I4MK 2A69A 2A6EA 2R7ZC 1SFOC 2O5IA 3HOVK 4LK1A 3S17C
chains in the Genus database with same CATH superfamily
1XXBA 3M4OK 5JVHS 3HOZK 3GTKK 2RH6A 3PO3C 3LAJA 3HOUC 3T02A 5C4JK 1WCMA 3CF5S 1EQRA 3JSTA 3S2DK 1DCPA 5IP9C 1WCMC 3H3VD 4WFBS 4C3JK 2B63A 3S14C 4GTFA 3TFJA 1X31C 1WQFA 2PPBA 2PA8L 3L4KA 1WIHA 2E2JC 1PJ7A 2YU9A 2B63C 3S15C 2JA6K 4P9SA 3SZYA 3GTMK 1WSRA 1TWAK 3GTKA 3H0GK 2ZFZA 3IPJA 2JA7A 2A6HA 3G4AA 2YU9C 1INNA 3HOZC 3GTKC 2R93K 4KN7A 2JA7C 4G0VA 4A3MK 1O28A 1XPPA 4C2MK 4Y7NK 4FM9A 5C4JC 3S2DC 1F7VA 1WORA 4QIWD 2Y0SD 2WB1L 2ZJPS 1V5VA 4KB2A 5EGHA 3A8JA 2KPUA 4KATA 3HKZL 4MEXA 2RGRA 3A8IA 3I4NK 1ZYRA 4C3JC 4C3HK 2JA6A 3S1QK 3S2HK 3H0GA 1TWCK 5HL7S 4GTLA 3M3YK 2JA6C 3PIOS 3GTMC 1I3QK 4A3FK 2R93A 3H0GC 4KMUA 2NVYK 2XCQA 4KM8A 1IBAA 2R93C 3AD8C 3HOYC 2P5MA 3SZZA 4A3MC 4BY7K 4C2MC 4Y7NC 5E68A 2KQ1A 2A69A 3HOVK 2GSUA 3A8KA 3OEPA 3BUEA 1L0WA 1G51A 4C3IC 1XZQB 2V6UA 1WSVA 2V6SA 4KDDA 2JA5K 3HOWC 1TWCA 4G0WA 3I4NC 4KMHA 4Y52C 3FKIA 3S1QC 3S2HC 2GAGC 1BGWA 3CQZA 4XLNA 1I50K 1TWGA 1TWCC 1EH1A 2NVYA 3RZDC 2WAQL 3M3YC 5IOTA 2VUMA 1I3QC 4A3FC 3LYWA 3G4CA 3CQZC 5JFEA 1TWGC 4BXXK 2FQOA 5C4XK 2NVYC 3QX3A 3OREA 2VUMC 1ZXOA 3TTGA 5IYDK 3PIPS 5IYBK 4KMDA 1WQGA 5C44K 4BY7C 2WB1D 3GTQA 4A3JK 2JA5A 1R9TK 4KN4A 1PJ5A 3HOVC 3WODA 1IW7A 4KMAA 4A3IC 3K7AK 5DM7S 2XCOA 3T00A 2JA5C 3GTQC 4J3NA 3DXJA 4KAWX 1I50A 3V4GA 4GTAA 4P5AA 1WOOA 4LOWA 4YFKA 2Y3PA 2L3UA 1EK8A 4G0UA 2CW0A 1BDFA 2R92A 3L4JA 5DM6S 3RZOK 1I50C 1DCOA 4AYBD 4BLBA 4XSZA 2GSNA 4A3CK 3GTGK 2R92C 5D4DA 4X6AC 1EI6A 2ZJQS 1YX2A 3M4OC 4WFAS 5C4XC 1B4BA 3GTOK 1SMYA 3GSIA 1O27A 5IOQA 5IYDC 4A3LK 4YFNA 5IORA 2BE5A 5IYBC 1XZQA 1EFWA 1JQWA 2NVXK 5C44C 2KXYA 3PO2K 5CJ9A 1O24A 1HI9A 1R9TC 3TFIA 4A3EK 3ADAC 3K7AC 4A3GK 4G7ZA 1VJEA 1VH2A 4QJVA 3ERED 2L5NA 2FQTA 2ZUFA 1B4AA 3GTMA 1TWAA 3GTGA 2WAQD 3AD9C 2EBBA 3RZOC 4GTEA 1TWAC 2JA8K 4A3CC 3GTGC 4NOIA 5TMCA 4BY1K 4RMFA 4BBRK 1UV7A 1O29A 4KC6A 3BP3A 3GTJK 3S1RK 3GTPK 3NUHA 1WOSA 1C0AA 4WJ3M 2GAHC 1Y1VK 5EGEA 2E2HK 2NVXC 5HQHA 5FLMK 3PO2C 2O5JA 4JK1A 2PHCB 4GT9A 4WCES 3HOXK 1SFOK 1USOA 4M1XA 3S17K 3FOFA 4A3GC 2CFAB 2PA8D 5M5YK 4XLPA 1DD5A 1YNNA 4C3HC 4A3DK 4BBSK 3N0CA 1I3QA 1JOEA 3S1NK 4GTBA 4OIOA 4G7HA 4QJVB 3GEHA 4YFXA 4MQ9A 3GTJA 1XZPB 3FOEA 1I6VA 4QIWL 2Y0SL 1XXCA 1I6HK 4YG2A 2R7ZK 4BY1C 2E2HA 4BBRC 3GTJC 1IQ0A 5M5WK 3GTPC 4MEYA 4LQYA 1Y1VC 4KARA 3S0XA 2E2HC 1HQMA 2E2IK 1ZQ1C 5TMFA 5FLMC 1O2AA 3S1MK 4Q5SA 2YU9K 3HKZD 4A3KK 3HOXC 5TJ3A 4PAAA 3OPFA 2ZJRS 1IL2A 4P5BA 4GTDA 4LJZA 4OIRA 1ZVUA 5M5XK 2JA7K 4O2DA 1VLOA 4A3DC 4WF9S 4BBSC 1K83K 5M3FK 3EQLA 4DDQA 1VRQC 3HXAA 5JVGS 2PMZL 4LLGA 3S1NC 3CAGA 2R7ZA 1GE9A 4GTCA 1F93A 3DLLS 1DCHA 4OIQA 3GEIA 1USMA 1I6HC 4BXXC 3I4MK 2R7ZC 2A6EA 2O5IA 4LK1A 4PABA 2E2IA 2JH3A 3GIRA 3GTLK 2A68A 1R9TA 2KWAA 2GSOA 2CFAA 4BKWA 4IOAS 2E2IC 4A3JC 5IP7K 1Y1WK 2D6FC 3S1MC 3GEEA 1XXAA 2NVQK 4A3KC 1IS1A 2NVTK 5C3EK 1K83A 4XSXA 1O25A 4IO9S 4BLAA 3HOYK 1XZPA 1TWFK 1K83C 1VGXA 4KM9A 1TWHK 1J98A 3TFHA 1J6XA 4C3IK 4GZYA 3GTOA 4KB4A 5CHPA 3GTLA 3HOWK 2NVXA 3FHZA 4Q4ZA 1ZBSA 4Y52K 3I4MC 5IYCK 3H3VL 4XCHA 2W7VA 3AQOA 3GTOC 4FZBA 4A93K 3GTLC 4GFQA 3S16K 1Y1WA 4A3LC 4A3BK 4WFNS 1IE0A 4OIPA 1F7UA 4IOCS 3LPXA 3RZDK 3LAPA 3FKIK 4LR2A 3VA7A 5IP7C 1Y1WC 4AYBL 3CQZK 3AQPA 4LK0A 1O26A 4WILA 1TWGK 3Q3QA 1KQ4A 4A3EC 1TWFA 2NVQC 2NVTC 3PO3K 5C3EC 5M3MK 4WJ4A 3N0BA 2V6TA 2VUMK 1PJ6A 3HOUK 1TWHA 1JVIA 1O2BA 2PMZD 1TWFC 1J6WA 1YNJA 1J6VA 4OINA 1TWHC 1F9NA 5IP9K 1WCMK 1BS2A 3AH5A 4A3IK 1YCLA 1O2FB 1WOPA 2JA8C 2XCRB 3GTPA 3GTQK 5JVOA 3GDZA 5L46A 3N3YA 3S14K 1Y1VA 5FJ8K 5IYCC 1FEUA 3S1RC 1AB4A 2P8TA 2E2JK 4A93C 2ZUEA 3S16C 1SFOA 1BJTA 4A3BC 4AH6A 4G7OA 5HL8A 2B63K 3S15K 1ISEA 3AD7C 3BP8C 4KASA 3FKIC 4ILDA 1WQHA 4C45A 2R92K 3T01A 5IOSA 4X6AK 4ZH4A 4U67S 1SFOC 1RU0A 3S17C 3MMLB
chains in the Genus database with same CATH topology
3M4OK 2WAQD 3GTLK 2A68A 3HOZK 3GTKK 4C3IC 3RZOC 3PO3C 2JA5K 1TWAC 3HOWC 3HOUC 2JA8K 4A3CC 3GTGC 5C4JK 2E2IC 4A3JC 3I4NC 5IP7K 4NOIA 5TMCA 1Y1WK 4Y52C 4BY1K 3S2DK 4BBRK 3S1QC 3S2HC 3S1MC 3GTJK 2NVQK 4A3KC 2NVTK 4XLNA 1I50K 5C3EK 3S1RK 1TWCC 4XSXA 3GTPK 5IP9C 1WCMC 3RZDC 1Y1VK 2WAQL 2E2HK 2NVXC 3M3YC 3H3VD 4C3JK 3HOYK 1I3QC 4A3FC 3PO2C 3S14C 2O5JA 4JK1A 3CQZC 1TWFK 5FLMK 1K83C 1TWGC 4BXXK 2PPBA 2PA8L 5C4XK 2NVYC 3HOXK 1SFOK 3S17K 1TWHK 2E2JC 2VUMC 5IYDK 4C3IK 4GZYA 5IYBK 2B63C 3S15C 4A3GC 2JA6K 2PA8D 5M5YK 3GTMK 4XLPA 5C44K 1YNNA 1TWAK 4C3HC 3HOWK 3H0GK 4A3DK 4BY7C 4BBSK 2WB1D 2A6HA 4A3JK 4Q4ZA 4Y52K 3I4MC 2YU9C 5IYCK 3H3VL 1R9TK 4KN4A 3S1NK 3GTOC 3HOVC 3WODA 4A93K 4OIOA 1IW7A 3GTLC 3S16K 4G7HA 4A3IC 4A3LC 3HOZC 3GTKC 3K7AK 4QJVB 4YFXA 4OIPA 4A3BK 4KN7A 2R93K 2JA5C 4MQ9A 2JA7C 3GTQC 3RZDK 3DXJA 4A3MK 1I6VA 4QIWL 2Y0SL 1I6HK 3FKIK 1XPPA 4C2MK 4YG2A 4Y7NK 5C4JC 3M3YK 3S2DC 5IP7C 4YFKA 1Y1WC 4BY1C 3CQZK 4AYBL 2R7ZK 4LK0A 2CW0A 4BBRC 1TWGK 1BDFA 4QIWD 2Y0SD 4A3EC 2WB1L 3GTJC 2NVQC 5M5WK 3RZOK 2NVTC 3PO3K 1I50C 5C3EC 5M3MK 3GTPC 4MEYA 4AYBD 2VUMK 4XSZA 1Y1VC 3HOUK 3HKZL 4MEXA 2E2HC 4A3CK 1HQMA 3GTGK 2E2IK 1ZYRA 4C3JC 3I4NK 2R92C 2PMZD 4C3HK 5D4DA 4X6AC 1TWFC 5FLMC 5TMFA 1YNJA 3S1QK 3S2HK 3S1MK 4Q5SA 3M4OC 2YU9K 3HKZD 5C4XC 4A3KK 3HOXC 3GTOK 1SMYA 4OINA 1TWCK 1TWHC 5IP9K 1WCMK 5IYDC 4A3IK 4A3LK 4YFNA 2BE5A 5IYBC 2NVXK 4LJZA 4OIRA 2JA8C 2JA6C 3GTQK 5M5XK 3GTMC 2JA7K 5C44C 1I3QK 4A3FK 3PO2K 3S14K 3H0GC 4A3DC 4BBSC 1K83K 5FJ8K 5M3FK 3EQLA 4KMUA 2NVYK 5IYCC 1R9TC 2PMZL 4LLGA 3S1NC 3S1RC 2E2JK 4A93C 4A3EK 3S16C 3K7AC 4A3BC 4G7OA 4G7ZA 2R93C 2B63K 3S15K 4A3GK 4QJVA 4OIQA 3HOYC 4A3MC 4BY7K 1I6HC 3FKIC 4C2MC 4Y7NC 2R92K 4X6AK 4ZH4A 4BXXC 3I4MK 2A69A 2A6EA 2R7ZC 1SFOC 2O5IA 3HOVK 4LK1A 3S17C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3M4O K;  2WAQ D;  3GTL K;  2A68 A;  3HOZ K;  3GTK K;  4C3I C;  3RZO C;  3PO3 C;  2JA5 K;  1TWA C;  3HOW C;  3HOU C;  2JA8 K;  4A3C C;  3GTG C;  5C4J K;  2E2I C;  4A3J C;  3I4N C;  5IP7 K;  4NOI A;  5TMC A;  1Y1W K;  4Y52 C;  4BY1 K;  3S2D K;  4BBR K;  3S1Q C;  3S2H C;  3S1M C;  3GTJ K;  2NVQ K;  4A3K C;  2NVT K;  4XLN A;  1I50 K;  5C3E K;  3S1R K;  1TWC C;  4XSX A;  3GTP K;  5IP9 C;  1WCM C;  3RZD C;  1Y1V K;  2WAQ L;  2E2H K;  2NVX C;  3M3Y C;  3H3V D;  4C3J K;  3HOY K;  1I3Q C;  4A3F C;  3PO2 C;  3S14 C;  2O5J A;  4JK1 A;  3CQZ C;  1TWF K;  5FLM K;  1K83 C;  1TWG C;  4BXX K;  2PPB A;  2PA8 L;  5C4X K;  2NVY C;  3HOX K;  1SFO K;  3S17 K;  1TWH K;  2E2J C;  2VUM C;  5IYD K;  4C3I K;  4GZY A;  5IYB K;  2B63 C;  3S15 C;  4A3G C;  2JA6 K;  2PA8 D;  5M5Y K;  3GTM K;  4XLP A;  5C44 K;  1YNN A;  1TWA K;  4C3H C;  3HOW K;  3H0G K;  4A3D K;  4BY7 C;  4BBS K;  2WB1 D;  2A6H A;  4A3J K;  4Q4Z A;  4Y52 K;  3I4M C;  2YU9 C;  5IYC K;  3H3V L;  1R9T K;  4KN4 A;  3S1N K;  3GTO C;  3HOV C;  3WOD A;  4A93 K;  4OIO A;  1IW7 A;  3GTL C;  3S16 K;  4G7H A;  4A3I C;  4A3L C;  3HOZ C;  3GTK C;  3K7A K;  4QJV B;  4YFX A;  4OIP A;  4A3B K;  4KN7 A;  2R93 K;  2JA5 C;  4MQ9 A;  2JA7 C;  3GTQ C;  3RZD K;  3DXJ A;  4A3M K;  1I6V A;  4QIW L;  2Y0S L;  1I6H K;  3FKI K;  1XPP A;  4C2M K;  4YG2 A;  4Y7N K;  5C4J C;  3M3Y K;  3S2D C;  5IP7 C;  4YFK A;  1Y1W C;  4BY1 C;  3CQZ K;  4AYB L;  2R7Z K;  4LK0 A;  2CW0 A;  4BBR C;  1TWG K;  1BDF A;  4QIW D;  2Y0S D;  4A3E C;  2WB1 L;  3GTJ C;  2NVQ C;  5M5W K;  3RZO K;  2NVT C;  3PO3 K;  1I50 C;  5C3E C;  5M3M K;  3GTP C;  4MEY A;  4AYB D;  2VUM K;  4XSZ A;  1Y1V C;  3HOU K;  3HKZ L;  4MEX A;  2E2H C;  4A3C K;  1HQM A;  3GTG K;  2E2I K;  1ZYR A;  4C3J C;  3I4N K;  2R92 C;  2PMZ D;  4C3H K;  5D4D A;  4X6A C;  1TWF C;  5FLM C;  5TMF A;  1YNJ A;  3S1Q K;  3S2H K;  3S1M K;  4Q5S A;  3M4O C;  2YU9 K;  3HKZ D;  5C4X C;  4A3K K;  3HOX C;  3GTO K;  1SMY A;  4OIN A;  1TWC K;  1TWH C;  5IP9 K;  1WCM K;  5IYD C;  4A3I K;  4A3L K;  4YFN A;  2BE5 A;  5IYB C;  2NVX K;  4LJZ A;  4OIR A;  2JA8 C;  2JA6 C;  3GTQ K;  5M5X K;  3GTM C;  2JA7 K;  5C44 C;  1I3Q K;  4A3F K;  3PO2 K;  3S14 K;  3H0G C;  4A3D C;  4BBS C;  1K83 K;  5FJ8 K;  5M3F K;  3EQL A;  4KMU A;  2NVY K;  5IYC C;  1R9T C;  2PMZ L;  4LLG A;  3S1N C;  3S1R C;  2E2J K;  4A93 C;  4A3E K;  3S16 C;  3K7A C;  4A3B C;  4G7O A;  4G7Z A;  2R93 C;  2B63 K;  3S15 K;  4A3G K;  4QJV A;  4OIQ A;  3HOY C;  4A3M C;  4BY7 K;  1I6H C;  3FKI C;  4C2M C;  4Y7N C;  2R92 K;  4X6A K;  4ZH4 A;  4BXX C;  3I4M K;  2A69 A;  2A6E A;  2R7Z C;  1SFO C;  2O5I A;  3HOV K;  4LK1 A;  3S17 C; 
#chains in the Genus database with same CATH topology
 1XXB A;  3M4O K;  5JVH S;  3HOZ K;  3GTK K;  2RH6 A;  3PO3 C;  3LAJ A;  3HOU C;  3T02 A;  5C4J K;  1WCM A;  3CF5 S;  1EQR A;  3JST A;  3S2D K;  1DCP A;  5IP9 C;  1WCM C;  3H3V D;  4WFB S;  4C3J K;  2B63 A;  3S14 C;  4GTF A;  3TFJ A;  1X31 C;  1WQF A;  2PPB A;  2PA8 L;  3L4K A;  1WIH A;  2E2J C;  1PJ7 A;  2YU9 A;  2B63 C;  3S15 C;  2JA6 K;  4P9S A;  3SZY A;  3GTM K;  1WSR A;  1TWA K;  3GTK A;  3H0G K;  2ZFZ A;  3IPJ A;  2JA7 A;  2A6H A;  3G4A A;  2YU9 C;  1INN A;  3HOZ C;  3GTK C;  2R93 K;  4KN7 A;  2JA7 C;  4G0V A;  4A3M K;  1O28 A;  1XPP A;  4C2M K;  4Y7N K;  4FM9 A;  5C4J C;  3S2D C;  1F7V A;  1WOR A;  4QIW D;  2Y0S D;  2WB1 L;  2ZJP S;  1V5V A;  4KB2 A;  5EGH A;  3A8J A;  2KPU A;  4KAT A;  3HKZ L;  4MEX A;  2RGR A;  3A8I A;  3I4N K;  1ZYR A;  4C3J C;  4C3H K;  2JA6 A;  3S1Q K;  3S2H K;  3H0G A;  1TWC K;  5HL7 S;  4GTL A;  3M3Y K;  2JA6 C;  3PIO S;  3GTM C;  1I3Q K;  4A3F K;  2R93 A;  3H0G C;  4KMU A;  2NVY K;  2XCQ A;  4KM8 A;  1IBA A;  2R93 C;  3AD8 C;  3HOY C;  2P5M A;  3SZZ A;  4A3M C;  4BY7 K;  4C2M C;  4Y7N C;  5E68 A;  2KQ1 A;  2A69 A;  3HOV K;  2GSU A;  3A8K A;  3OEP A;  3BUE A;  1L0W A;  1G51 A;  4C3I C;  1XZQ B;  2V6U A;  1WSV A;  2V6S A;  4KDD A;  2JA5 K;  3HOW C;  1TWC A;  4G0W A;  3I4N C;  4KMH A;  4Y52 C;  3FKI A;  3S1Q C;  3S2H C;  2GAG C;  1BGW A;  3CQZ A;  4XLN A;  1I50 K;  1TWG A;  1TWC C;  1EH1 A;  2NVY A;  3RZD C;  2WAQ L;  3M3Y C;  5IOT A;  2VUM A;  1I3Q C;  4A3F C;  3LYW A;  3G4C A;  3CQZ C;  5JFE A;  1TWG C;  4BXX K;  2FQO A;  5C4X K;  2NVY C;  3QX3 A;  3ORE A;  2VUM C;  1ZXO A;  3TTG A;  5IYD K;  3PIP S;  5IYB K;  4KMD A;  1WQG A;  5C44 K;  4BY7 C;  2WB1 D;  3GTQ A;  4A3J K;  2JA5 A;  1R9T K;  4KN4 A;  1PJ5 A;  3HOV C;  3WOD A;  1IW7 A;  4KMA A;  4A3I C;  3K7A K;  5DM7 S;  2XCO A;  3T00 A;  2JA5 C;  3GTQ C;  4J3N A;  3DXJ A;  4KAW X;  1I50 A;  3V4G A;  4GTA A;  4P5A A;  1WOO A;  4LOW A;  4YFK A;  2Y3P A;  2L3U A;  1EK8 A;  4G0U A;  2CW0 A;  1BDF A;  2R92 A;  3L4J A;  5DM6 S;  3RZO K;  1I50 C;  1DCO A;  4AYB D;  4BLB A;  4XSZ A;  2GSN A;  4A3C K;  3GTG K;  2R92 C;  5D4D A;  4X6A C;  1EI6 A;  2ZJQ S;  1YX2 A;  3M4O C;  4WFA S;  5C4X C;  1B4B A;  3GTO K;  1SMY A;  3GSI A;  1O27 A;  5IOQ A;  5IYD C;  4A3L K;  4YFN A;  5IOR A;  2BE5 A;  5IYB C;  1XZQ A;  1EFW A;  1JQW A;  2NVX K;  5C44 C;  2KXY A;  3PO2 K;  5CJ9 A;  1O24 A;  1HI9 A;  1R9T C;  3TFI A;  4A3E K;  3ADA C;  3K7A C;  4A3G K;  4G7Z A;  1VJE A;  1VH2 A;  4QJV A;  3ERE D;  2L5N A;  2FQT A;  2ZUF A;  1B4A A;  3GTM A;  1TWA A;  3GTG A;  2WAQ D;  3AD9 C;  2EBB A;  3RZO C;  4GTE A;  1TWA C;  2JA8 K;  4A3C C;  3GTG C;  4NOI A;  5TMC A;  4BY1 K;  4RMF A;  4BBR K;  1UV7 A;  1O29 A;  4KC6 A;  3BP3 A;  3GTJ K;  3S1R K;  3GTP K;  3NUH A;  1WOS A;  1C0A A;  4WJ3 M;  2GAH C;  1Y1V K;  5EGE A;  2E2H K;  2NVX C;  5HQH A;  5FLM K;  3PO2 C;  2O5J A;  4JK1 A;  2PHC B;  4GT9 A;  4WCE S;  3HOX K;  1SFO K;  1USO A;  4M1X A;  3S17 K;  3FOF A;  4A3G C;  2CFA B;  2PA8 D;  5M5Y K;  4XLP A;  1DD5 A;  1YNN A;  4C3H C;  4A3D K;  4BBS K;  3N0C A;  1I3Q A;  1JOE A;  3S1N K;  4GTB A;  4OIO A;  4G7H A;  4QJV B;  3GEH A;  4YFX A;  4MQ9 A;  3GTJ A;  1XZP B;  3FOE A;  1I6V A;  4QIW L;  2Y0S L;  1XXC A;  1I6H K;  4YG2 A;  2R7Z K;  4BY1 C;  2E2H A;  4BBR C;  3GTJ C;  1IQ0 A;  5M5W K;  3GTP C;  4MEY A;  4LQY A;  1Y1V C;  4KAR A;  3S0X A;  2E2H C;  1HQM A;  2E2I K;  1ZQ1 C;  5TMF A;  5FLM C;  1O2A A;  3S1M K;  4Q5S A;  2YU9 K;  3HKZ D;  4A3K K;  3HOX C;  5TJ3 A;  4PAA A;  3OPF A;  2ZJR S;  1IL2 A;  4P5B A;  4GTD A;  4LJZ A;  4OIR A;  1ZVU A;  5M5X K;  2JA7 K;  4O2D A;  1VLO A;  4A3D C;  4WF9 S;  4BBS C;  1K83 K;  5M3F K;  3EQL A;  4DDQ A;  1VRQ C;  3HXA A;  5JVG S;  2PMZ L;  4LLG A;  3S1N C;  3CAG A;  2R7Z A;  1GE9 A;  4GTC A;  1F93 A;  3DLL S;  1DCH A;  4OIQ A;  3GEI A;  1USM A;  1I6H C;  4BXX C;  3I4M K;  2R7Z C;  2A6E A;  2O5I A;  4LK1 A;  4PAB A;  2E2I A;  2JH3 A;  3GIR A;  3GTL K;  2A68 A;  1R9T A;  2KWA A;  2GSO A;  2CFA A;  4BKW A;  4IOA S;  2E2I C;  4A3J C;  5IP7 K;  1Y1W K;  2D6F C;  3S1M C;  3GEE A;  1XXA A;  2NVQ K;  4A3K C;  1IS1 A;  2NVT K;  5C3E K;  1K83 A;  4XSX A;  1O25 A;  4IO9 S;  4BLA A;  3HOY K;  1XZP A;  1TWF K;  1K83 C;  1VGX A;  4KM9 A;  1TWH K;  1J98 A;  3TFH A;  1J6X A;  4C3I K;  4GZY A;  3GTO A;  4KB4 A;  5CHP A;  3GTL A;  3HOW K;  2NVX A;  3FHZ A;  4Q4Z A;  1ZBS A;  4Y52 K;  3I4M C;  5IYC K;  3H3V L;  4XCH A;  2W7V A;  3AQO A;  3GTO C;  4FZB A;  4A93 K;  3GTL C;  4GFQ A;  3S16 K;  1Y1W A;  4A3L C;  4A3B K;  4WFN S;  1IE0 A;  4OIP A;  1F7U A;  4IOC S;  3LPX A;  3RZD K;  3LAP A;  3FKI K;  4LR2 A;  3VA7 A;  5IP7 C;  1Y1W C;  4AYB L;  3CQZ K;  3AQP A;  4LK0 A;  1O26 A;  4WIL A;  1TWG K;  3Q3Q A;  1KQ4 A;  4A3E C;  1TWF A;  2NVQ C;  2NVT C;  3PO3 K;  5C3E C;  5M3M K;  4WJ4 A;  3N0B A;  2V6T A;  2VUM K;  1PJ6 A;  3HOU K;  1TWH A;  1JVI A;  1O2B A;  2PMZ D;  1TWF C;  1J6W A;  1YNJ A;  1J6V A;  4OIN A;  1TWH C;  1F9N A;  5IP9 K;  1WCM K;  1BS2 A;  3AH5 A;  4A3I K;  1YCL A;  1O2F B;  1WOP A;  2JA8 C;  2XCR B;  3GTP A;  3GTQ K;  5JVO A;  3GDZ A;  5L46 A;  3N3Y A;  3S14 K;  1Y1V A;  5FJ8 K;  5IYC C;  1FEU A;  3S1R C;  1AB4 A;  2P8T A;  2E2J K;  4A93 C;  2ZUE A;  3S16 C;  1SFO A;  1BJT A;  4A3B C;  4AH6 A;  4G7O A;  5HL8 A;  2B63 K;  3S15 K;  1ISE A;  3AD7 C;  3BP8 C;  4KAS A;  3FKI C;  4ILD A;  1WQH A;  4C45 A;  2R92 K;  3T01 A;  5IOS A;  4X6A K;  4ZH4 A;  4U67 S;  1SFO C;  1RU0 A;  3S17 C;  3MML B; 
#chains in the Genus database with same CATH homology
 3M4O K;  2WAQ D;  3GTL K;  2A68 A;  3HOZ K;  3GTK K;  4C3I C;  3RZO C;  3PO3 C;  2JA5 K;  1TWA C;  3HOW C;  3HOU C;  2JA8 K;  4A3C C;  3GTG C;  5C4J K;  2E2I C;  4A3J C;  3I4N C;  5IP7 K;  4NOI A;  5TMC A;  1Y1W K;  4Y52 C;  4BY1 K;  3S2D K;  4BBR K;  3S1Q C;  3S2H C;  3S1M C;  3GTJ K;  2NVQ K;  4A3K C;  2NVT K;  4XLN A;  1I50 K;  5C3E K;  3S1R K;  1TWC C;  4XSX A;  3GTP K;  5IP9 C;  1WCM C;  3RZD C;  1Y1V K;  2WAQ L;  2E2H K;  2NVX C;  3M3Y C;  3H3V D;  4C3J K;  3HOY K;  1I3Q C;  4A3F C;  3PO2 C;  3S14 C;  2O5J A;  4JK1 A;  3CQZ C;  1TWF K;  5FLM K;  1K83 C;  1TWG C;  4BXX K;  2PPB A;  2PA8 L;  5C4X K;  2NVY C;  3HOX K;  1SFO K;  3S17 K;  1TWH K;  2E2J C;  2VUM C;  5IYD K;  4C3I K;  4GZY A;  5IYB K;  2B63 C;  3S15 C;  4A3G C;  2JA6 K;  2PA8 D;  5M5Y K;  3GTM K;  4XLP A;  5C44 K;  1YNN A;  1TWA K;  4C3H C;  3HOW K;  3H0G K;  4A3D K;  4BY7 C;  4BBS K;  2WB1 D;  2A6H A;  4A3J K;  4Q4Z A;  4Y52 K;  3I4M C;  2YU9 C;  5IYC K;  3H3V L;  1R9T K;  4KN4 A;  3S1N K;  3GTO C;  3HOV C;  3WOD A;  4A93 K;  4OIO A;  1IW7 A;  3GTL C;  3S16 K;  4G7H A;  4A3I C;  4A3L C;  3HOZ C;  3GTK C;  3K7A K;  4QJV B;  4YFX A;  4OIP A;  4A3B K;  4KN7 A;  2R93 K;  2JA5 C;  4MQ9 A;  2JA7 C;  3GTQ C;  3RZD K;  3DXJ A;  4A3M K;  1I6V A;  4QIW L;  2Y0S L;  1I6H K;  3FKI K;  1XPP A;  4C2M K;  4YG2 A;  4Y7N K;  5C4J C;  3M3Y K;  3S2D C;  5IP7 C;  4YFK A;  1Y1W C;  4BY1 C;  3CQZ K;  4AYB L;  2R7Z K;  4LK0 A;  2CW0 A;  4BBR C;  1TWG K;  1BDF A;  4QIW D;  2Y0S D;  4A3E C;  2WB1 L;  3GTJ C;  2NVQ C;  5M5W K;  3RZO K;  2NVT C;  3PO3 K;  1I50 C;  5C3E C;  5M3M K;  3GTP C;  4MEY A;  4AYB D;  2VUM K;  4XSZ A;  1Y1V C;  3HOU K;  3HKZ L;  4MEX A;  2E2H C;  4A3C K;  1HQM A;  3GTG K;  2E2I K;  1ZYR A;  4C3J C;  3I4N K;  2R92 C;  2PMZ D;  4C3H K;  5D4D A;  4X6A C;  1TWF C;  5FLM C;  5TMF A;  1YNJ A;  3S1Q K;  3S2H K;  3S1M K;  4Q5S A;  3M4O C;  2YU9 K;  3HKZ D;  5C4X C;  4A3K K;  3HOX C;  3GTO K;  1SMY A;  4OIN A;  1TWC K;  1TWH C;  5IP9 K;  1WCM K;  5IYD C;  4A3I K;  4A3L K;  4YFN A;  2BE5 A;  5IYB C;  2NVX K;  4LJZ A;  4OIR A;  2JA8 C;  2JA6 C;  3GTQ K;  5M5X K;  3GTM C;  2JA7 K;  5C44 C;  1I3Q K;  4A3F K;  3PO2 K;  3S14 K;  3H0G C;  4A3D C;  4BBS C;  1K83 K;  5FJ8 K;  5M3F K;  3EQL A;  4KMU A;  2NVY K;  5IYC C;  1R9T C;  2PMZ L;  4LLG A;  3S1N C;  3S1R C;  2E2J K;  4A93 C;  4A3E K;  3S16 C;  3K7A C;  4A3B C;  4G7O A;  4G7Z A;  2R93 C;  2B63 K;  3S15 K;  4A3G K;  4QJV A;  4OIQ A;  3HOY C;  4A3M C;  4BY7 K;  1I6H C;  3FKI C;  4C2M C;  4Y7N C;  2R92 K;  4X6A K;  4ZH4 A;  4BXX C;  3I4M K;  2A69 A;  2A6E A;  2R7Z C;  1SFO C;  2O5I A;  3HOV K;  4LK1 A;  3S17 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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