2L5NA

Nmr structure of ybbr family protein dhaf_0833 (residues 32-118) from desulfitobacterium hafniense dcb-2: northeast structural genomics consortium target dhr29b
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
96
structure length
96
Chain Sequence
SSQTLDRDPTLTLSLIAKNTPANSMIMTKLPSVRVKTEGYNPSINVNELFAYVDLSGSEPGEHDYEVKVEPIPNIKIVEISPRVVTLQLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of domains I and IV from YbbR are representative of a widely distributed protein family.
pubmed doi rcsb
molecule tags Structural genomics, unknown function
source organism Desulfitobacterium hafniense
molecule keywords YbbR family protein
total genus 3
structure length 96
sequence length 96
ec nomenclature
pdb deposition date 2010-11-02
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.120.30 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 RNA Polymerase Alpha Subunit; Chain A, domain 2 2l5nA00
2L3UA 2KQ1A 5HQHA 2L5NA 3LYWA 2KPUA
chains in the Genus database with same CATH superfamily
4BBSC 4IOCS 2KXYA 3HOXC 4Y7NC 4G7OA 2R92C 5HL7S 1SFOC 1HQMA 5FLMC 2NVXC 4QIWD 3S16C 3I4NC 3S1RC 3CQZC 4A3IC 4A3MC 1YNJA 3GTKC 4NOIA 4Y52C 4XLPA 5IYDC 5HQHA 1TWFC 3RZDC 3S1MC 3PIPS 2ZJRS 2PPBA 1I3QC 1Y1VC 2L3UA 5TMFA 3DXJA 2KQ1A 2PMZD 4C3JC 4A3EC 1WCMC 3HKZD 1TWAC 2YU9C 4BY1C 2JA7C 5C44C 2ZJPS 5IP7C 2VUMC 4IOAS 4MQ9A 4LLGA 2NVQC 3HOWC 2A69A 2O5JA 2A6EA 4WFAS 2CW0A 2Y0SD 4YFNA 4WFNS 3GTJC 4BXXC 3K7AC 1IW7A 4KMUA 3FKIC 4YFXA 4ZH4A 5IYBC 4Q4ZA 3PIOS 4A3FC 4A3JC 3LYWA 1BDFA 4C3HC 1TWCC 4BBRC 5DM6S 4KN7A 4WF9S 4MEXA 3GTPC 4LK1A 1FEUA 3GTGC 2A68A 2NVTC 3S1NC 4JK1A 5IYCC 2A6HA 1TWGC 2JA8C 4A3DC 2WB1D 3HOUC 3RZOC 3HOZC 3EQLA 4A93C 3GTQC 5C4XC 3PO2C 5TMCA 5C4JC 4OIPA 2E2HC 3GTOC 3S1QC 4OIQA 4GZYA 3S17C 1ZYRA 5IP9C 4LK0A 3DLLS 2E2JC 5D4DA 2B63C 4A3BC 4BY7C 1YNNA 3H0GC 4XLNA 4IO9S 2JA5C 2KPUA 4G7ZA 1I6VA 1R9TC 4A3CC 3S2DC 5DM7S 3S14C 4YFKA 4YG2A 2L5NA 3WODA 4XSZA 4QJVA 4OIOA 2ZJQS 4LJZA 4A3KC 3M4OC 2NVYC 5JVHS 4A3GC 5JVGS 4WCES 4XSXA 1I6HC 4X6AC 4C3IC 2PA8D 2BE5A 3S15C 3I4MC 4WFBS 3S2HC 4AYBD 4C2MC 1K83C 4OIRA 1Y1WC 1TWHC 3GTMC 4Q5SA 1I50C 2R93C 1SMYA 3CF5S 4G7HA 4OINA 3HOVC 2JA6C 5C3EC 2WAQD 4KN4A 4U67S 2E2IC 3H3VD 3HOYC 3PO3C 4A3LC 2O5IA 2R7ZC 4MEYA 3GTLC 3M3YC
chains in the Genus database with same CATH topology
2L3UA 2KXYA 2KQ1A 5HQHA 2L5NA 3LYWA 2KPUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2L3U A;  2KQ1 A;  5HQH A;  2L5N A;  3LYW A;  2KPU A; 
#chains in the Genus database with same CATH topology
 4BBS C;  4IOC S;  2KXY A;  3HOX C;  4Y7N C;  4G7O A;  2R92 C;  5HL7 S;  1SFO C;  1HQM A;  5FLM C;  2NVX C;  4QIW D;  3S16 C;  3I4N C;  3S1R C;  3CQZ C;  4A3I C;  4A3M C;  1YNJ A;  3GTK C;  4NOI A;  4Y52 C;  4XLP A;  5IYD C;  5HQH A;  1TWF C;  3RZD C;  3S1M C;  3PIP S;  2ZJR S;  2PPB A;  1I3Q C;  1Y1V C;  2L3U A;  5TMF A;  3DXJ A;  2KQ1 A;  2PMZ D;  4C3J C;  4A3E C;  1WCM C;  3HKZ D;  1TWA C;  2YU9 C;  4BY1 C;  2JA7 C;  5C44 C;  2ZJP S;  5IP7 C;  2VUM C;  4IOA S;  4MQ9 A;  4LLG A;  2NVQ C;  3HOW C;  2A69 A;  2O5J A;  2A6E A;  4WFA S;  2CW0 A;  2Y0S D;  4YFN A;  4WFN S;  3GTJ C;  4BXX C;  3K7A C;  1IW7 A;  4KMU A;  3FKI C;  4YFX A;  4ZH4 A;  5IYB C;  4Q4Z A;  3PIO S;  4A3F C;  4A3J C;  3LYW A;  1BDF A;  4C3H C;  1TWC C;  4BBR C;  5DM6 S;  4KN7 A;  4WF9 S;  4MEX A;  3GTP C;  4LK1 A;  1FEU A;  3GTG C;  2A68 A;  2NVT C;  3S1N C;  4JK1 A;  5IYC C;  2A6H A;  1TWG C;  2JA8 C;  4A3D C;  2WB1 D;  3HOU C;  3RZO C;  3HOZ C;  3EQL A;  4A93 C;  3GTQ C;  5C4X C;  3PO2 C;  5TMC A;  5C4J C;  4OIP A;  2E2H C;  3GTO C;  3S1Q C;  4OIQ A;  4GZY A;  3S17 C;  1ZYR A;  5IP9 C;  4LK0 A;  3DLL S;  2E2J C;  5D4D A;  2B63 C;  4A3B C;  4BY7 C;  1YNN A;  3H0G C;  4XLN A;  4IO9 S;  2JA5 C;  2KPU A;  4G7Z A;  1I6V A;  1R9T C;  4A3C C;  3S2D C;  5DM7 S;  3S14 C;  4YFK A;  4YG2 A;  2L5N A;  3WOD A;  4XSZ A;  4QJV A;  4OIO A;  2ZJQ S;  4LJZ A;  4A3K C;  3M4O C;  2NVY C;  5JVH S;  4A3G C;  5JVG S;  4WCE S;  4XSX A;  1I6H C;  4X6A C;  4C3I C;  2PA8 D;  2BE5 A;  3S15 C;  3I4M C;  4WFB S;  3S2H C;  4AYB D;  4C2M C;  1K83 C;  4OIR A;  1Y1W C;  1TWH C;  3GTM C;  4Q5S A;  1I50 C;  2R93 C;  1SMY A;  3CF5 S;  4G7H A;  4OIN A;  3HOV C;  2JA6 C;  5C3E C;  2WAQ D;  4KN4 A;  4U67 S;  2E2I C;  3H3V D;  3HOY C;  3PO3 C;  4A3L C;  2O5I A;  2R7Z C;  4MEY A;  3GTL C;  3M3Y C; 
#chains in the Genus database with same CATH homology
 2L3U A;  2KXY A;  2KQ1 A;  5HQH A;  2L5N A;  3LYW A;  2KPU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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