3MVNA

Crystal structure of a domain from a putative udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-medo-diaminopimelate ligase from haemophilus ducreyi 35000hp
Total Genus 36

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
36
sequence length
136
structure length
123
Chain Sequence
RLEVKGVVNNITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRKHELATSLQDADSVFIYQPWQVSEVLANLAQPAISADDVDELVMRIVQQAKPNDHILIMSNGAFGGIHQKLLTALA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Haemophilus ducreyi
publication title Crystal structure of a domain from a putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminopimelate ligase from Haemophilus ducreyi 35000HP
rcsb
molecule keywords UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-medo-diaminop
total genus 36
structure length 123
sequence length 136
ec nomenclature
pdb deposition date 2010-05-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.190.20 Alpha Beta Alpha-Beta Complex Protein-Tyrosine Phosphatase; Chain A Mur ligase, C-terminal domain 3mvnA00
4CVKA 1O5ZA 5A5FA 2JFGA 3MVNA 2WJPA 4CVLA 2JFHA 1E8CA 2GC5A 1GQYA 2Y1OA 2GCBA 2Y68A 4BUBA 2VORA 1P3DA 2WTZA 3ZM5A 1GG4A 3N2AA 3UAGA 1GQQA 3QCZA 2X5OA 1J6UA 2VOSA 3PYZA 2VTDA 3ZM6A 4QDIA 2AM2A 1W7KA 2GC6A 3NRSA 1P31A 1FGSA 4C12A 2F00A 1W78A 3HN7A 4QF5A 4HV4A 5A5EA 2Y66A 4C13A 1UAGA 2GCAA 1EEHA 2AM1A 1JBVA 4ZIYA 3ZL8A 2Y67A 2UAGA 1JBWA 4BUCA 2XJAA 1E0DA 2XPCA 4UAGA 2UUPA 4CVMA 3LK7A 2VTEA 2JFFA 2UUOA
chains in the Genus database with same CATH superfamily
3ZMPA 2F6YA 2JFHA 4PVGA 2H04A 4RHGA 5KA1A 2R0BA 4QBEA 1W7KA 2GC6A 1ONYA 2PBNA 4OHHA 1Q6PA 4HV4A 2Y66A 2JJDA 1KAKA 1V3AA 2AM1A 3D9CA 1U24A 4Y2EA 4NX8A 1A5YA 2C46A 1X24A 2H03A 4QBWA 5GTJA 4AZ1A 3I36A 5KA8A 2NT7A 4ZRTA 2Y96A 5HDEA 5J8RA 2CJZA 4CVKA 1L8KA 1O5ZA 5A5FA 2QDCA 4RKKA 2WJPA 2I75A 2A8BA 1G7GA 3V0DA 3QCZA 2I6PA 4WOHA 4WU2A 1PXHA 4GRYA 5BZZA 3MOWA 2CFVA 2I4HA 2F00A 2OC3A 4HRFA 1VHRA 3QCMA 2PQ5A 3EB1A 4QAHA 2HVLA 2PSZA 2SHPA 2UAGA 1JBWA 1M3GA 1T49A 2CM7A 3BRHA 1G1FA 2UUOA 3U96A 5MMZB 3H2XA 3AWEA 1ONZA 1GFYA 2VORA 2I5XA 2VOSA 2P6XA 4BPCA 3O5XA 4DGXA 2HXPA 4GRZA 2I4GA 1U25A 3QCEA 3V0JA 2VEWA 4RH5A 3S4EA 4JMKA 5LXQB 4Z6BA 3SR9A 1QXKA 2VTEA 5KA3A 1XXVA 2F46A 2H4VA 1FPZA 1YWFA 2GC5A 1GQYA 2BV5A 2HY3A 3F81A 1G4WR 2QCTA 1FQ1A 2CNGA 3QCCA 2OOQA 1YPTA 2HCMA 3F41A 1OHDA 1Q6NA 4JMJA 4RH9A 5BX1A 4QAPA 2CMBA 3I80A 1GWZA 2P4DA 5K22A 4YR8B 4GE5A 2QDMA 3ZMQA 2QBSA 4KYRA 2OZ5A 3QKQA 2PA5A 4BUBA 1P3DA 2VEXA 5AWXA 1YGUA 4Y14A 2CNEA 3V0FA 2AM2A 3I7ZA 1W78A 3BLTA 3CWEA 3ZM1A 3D44A 1MKPA 5KA2A 1JBVA 2BGDA 3ZM0A 4D3RA 5BZXA 3BM8A 1JF7A 2XPCA 4CVMA 4R0TA 2J16A 1EEOA 3EAXA 1T48A 5KACA 2F6VA 4RI4A 1NL9A 3S4OA 1C87A 1OEMX 3GXHA 2BZLA 2C7SA 2CM2A 3A5KA 2H02A 1J4XA 2HNQA 4I8NA 4OHLA 2I3UA 2A3KA 3QCJA 4PYHA 3QCFA 4BJOA 1C88A 4JBCA 1ZCKA 1G1HA 2B4UA 3D1QA 2VEYA 2JFFA 4C13A 2I6OA 3MVNA 1E8CA 2G59A 4OHIA 2WTZA 4NYHA 5KA7A 1YFOA 1C85A 2VTDA 2M3VA 1P31A 1NZ7A 4OHDA 4QUMA 4ICZA 4KYQA 1U26A 2UUPA 2Q47A 2H4GA 2ESBA 3GXGA 1PTYA 3RO1A 2CM8A 1Q6JA 2I42A 5KA4A 3NMEA 2HC1A 2B3OA 1R6HA 3F9AA 1I9SA 4R30A 2J17A 1C83A 4GE2A 3RGQA 2QCJA 5K23A 1OEVA 3V0IA 3HN7A 4H1OA 2CMAA 2OUDA 2F70A 2GJTA 3O4SA 4ERCA 2CM3A 2FJMA 1I57A 2DXPA 1PA9A 1PA1A 2NV5A 4GFVA 1AAXA 2Q05A 3QKPA 1YZ4A 1LQFA 2HB1A 2QDPA 1WRMA 4C12A 1PTUA 1XBOA 3S3EA 1NNYA 2B4OA 2F6ZA 1YTSA 1PYNA 3B7OA 4RI5A 3SMEA 1PTVA 3LK7A 4B04A 1Q6TA 2ZMMA 5KA0A 3EU0A 4D3PA 3O4TA 4MBBA 4WU3A 3QCNA 1BZJA 3S3FA 1OETA 3UAGA 3V0GA 1OHEA 3F99A 4GS0A 3QCBA 5KA9A 1YTNA 2QEPA 1L8GA 3QCGA 1PTTA 1Q6MA 3V0HA 2FH7A 1BZCA 4KI9A 2FJNA 5IBSA 2Y67A 3EZZA 1G7FA 5K9VA 1WAXA 4J51A 2JFGA 4ZI4A 3D42A 3RGOA 3OMHA 3QCDA 2I3RA 5KAAA 3O3LA 3NRSA 2AZRA 5EHPA 3A5JA 3CM3A 1EEHA 2QBRA 2NT2A 3AWFA 2GWOA 1XXPA 4UAGA 4IKCA 2AHSA 2CNHA 2BGEA 4NWGA 2B49A 2VEVA 5BUGA 2HC2A 2Y68A 2PI7A 1OESA 1PH0A 3N2AA 1FPRA 2NLKA 2IMGA 1J6UA 3PYZA 1KAVA 3QCKA 3OLRA 5K24A 3ZM6A 4YAAA 2GP0A 1YN9A 1FGSA 1RPMA 3F9BA 1YTWA 1YGRA 2I6IA 4ZIYA 4NNDA 1NWEA 4TVVA 2MBCA 4H34A 1QZ0A 1EENA 3ZM5A 1GQQA 2F6TA 5KABA 2B4SA 2I4EA 2BIJA 5K9WA 4S0GA 1OEUA 4OHEA 2QBQA 2I1YA 2HNPA 4BUCA 5IBMA 1G4US 1Q6SA 4NWFA 3MMJA 1RXDA 2QBPA 2Y1OA 4GWFA 3AWGA 3BLUA 1WCHA 1C84A 2E0TA 2B07A 1SUGA 2GCBA 4JNBA 3MOZA 4R0SA 2PT0A 1D5RA 3LJ8A 5K25A 1P15A 1JLNA 5EHRA 1ZCLA 1NO6A 2Y2FA 4D3QA 3D1HA 1ZZWA 2F6WA 3O4UA 3V0EA 2ZN7A 2XJAA 4GE6A 1G1GA 3S3KA 3ZM2A 4ZN5A 1ECVA 4CVLA 2WGPA 1BZHA 2I6JA 1I9TA 2CNFA 3QCHA 1T4JA 1OHCA 2B4PA 4HJPA 5A5EA 4QF5A 3S3HA 2GCAA 5M43A 3PS5A 3ZL8A 2H4KA 2J16B 4GFUA 3EMUA 2F71A 1OEOX 2VEUA 2RF6A 4QDIA 2NZ6A 2CMCA 5I6VA 1ZC0A 3D1OA 2I6MA 4HJQA 1Q1MA 1LARA 2CNIA 3ZV2A 2F6FA 1GG4A 2X5OA 2G6ZA 3RZ2A 1XRIA 4QUNA 4DGPA 3QCLA 3N0AA 4RDDA 1UAGA 3M4UA 1NWLA 1XM2A 2NTAA 5KADA 1E0DA 1LYVA 2YDUA 3ZM3A 4WTYA 3QCIA 1C86A
chains in the Genus database with same CATH topology
4CVKA 1O5ZA 5A5FA 2JFGA 3MVNA 2WJPA 4CVLA 2JFHA 1E8CA 2GC5A 1GQYA 2Y1OA 2GCBA 2Y68A 4BUBA 2VORA 1P3DA 2WTZA 3ZM5A 1GG4A 3N2AA 3UAGA 1GQQA 3QCZA 2X5OA 1J6UA 2VOSA 3PYZA 2VTDA 3ZM6A 4QDIA 2AM2A 1W7KA 2GC6A 3NRSA 1P31A 1FGSA 4C12A 2F00A 1W78A 3HN7A 4QF5A 4HV4A 5A5EA 2Y66A 4C13A 1UAGA 2GCAA 1EEHA 2AM1A 1JBVA 4ZIYA 3ZL8A 2Y67A 2UAGA 1JBWA 4BUCA 2XJAA 1E0DA 2XPCA 4UAGA 2UUPA 4CVMA 3LK7A 2VTEA 2JFFA 2UUOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4CVK A;  1O5Z A;  5A5F A;  2JFG A;  3MVN A;  2WJP A;  4CVL A;  2JFH A;  1E8C A;  2GC5 A;  1GQY A;  2Y1O A;  2GCB A;  2Y68 A;  4BUB A;  2VOR A;  1P3D A;  2WTZ A;  3ZM5 A;  1GG4 A;  3N2A A;  3UAG A;  1GQQ A;  3QCZ A;  2X5O A;  1J6U A;  2VOS A;  3PYZ A;  2VTD A;  3ZM6 A;  4QDI A;  2AM2 A;  1W7K A;  2GC6 A;  3NRS A;  1P31 A;  1FGS A;  4C12 A;  2F00 A;  1W78 A;  3HN7 A;  4QF5 A;  4HV4 A;  5A5E A;  2Y66 A;  4C13 A;  1UAG A;  2GCA A;  1EEH A;  2AM1 A;  1JBV A;  4ZIY A;  3ZL8 A;  2Y67 A;  2UAG A;  1JBW A;  4BUC A;  2XJA A;  1E0D A;  2XPC A;  4UAG A;  2UUP A;  4CVM A;  3LK7 A;  2VTE A;  2JFF A;  2UUO A; 
#chains in the Genus database with same CATH topology
 3ZMP A;  2F6Y A;  2JFH A;  4PVG A;  2H04 A;  4RHG A;  5KA1 A;  2R0B A;  4QBE A;  1W7K A;  2GC6 A;  1ONY A;  2PBN A;  4OHH A;  1Q6P A;  4HV4 A;  2Y66 A;  2JJD A;  1KAK A;  1V3A A;  2AM1 A;  3D9C A;  1U24 A;  4Y2E A;  4NX8 A;  1A5Y A;  2C46 A;  1X24 A;  2H03 A;  4QBW A;  5GTJ A;  4AZ1 A;  3I36 A;  5KA8 A;  2NT7 A;  4ZRT A;  2Y96 A;  5HDE A;  5J8R A;  2CJZ A;  4CVK A;  1L8K A;  1O5Z A;  5A5F A;  2QDC A;  4RKK A;  2WJP A;  2I75 A;  2A8B A;  1G7G A;  3V0D A;  3QCZ A;  2I6P A;  4WOH A;  4WU2 A;  1PXH A;  4GRY A;  5BZZ A;  3MOW A;  2CFV A;  2I4H A;  2F00 A;  2OC3 A;  4HRF A;  1VHR A;  3QCM A;  2PQ5 A;  3EB1 A;  4QAH A;  2HVL A;  2PSZ A;  2SHP A;  2UAG A;  1JBW A;  1M3G A;  1T49 A;  2CM7 A;  3BRH A;  1G1F A;  2UUO A;  3U96 A;  5MMZ B;  3H2X A;  3AWE A;  1ONZ A;  1GFY A;  2VOR A;  2I5X A;  2VOS A;  2P6X A;  4BPC A;  3O5X A;  4DGX A;  2HXP A;  4GRZ A;  2I4G A;  1U25 A;  3QCE A;  3V0J A;  2VEW A;  4RH5 A;  3S4E A;  4JMK A;  5LXQ B;  4Z6B A;  3SR9 A;  1QXK A;  2VTE A;  5KA3 A;  1XXV A;  2F46 A;  2H4V A;  1FPZ A;  1YWF A;  2GC5 A;  1GQY A;  2BV5 A;  2HY3 A;  3F81 A;  1G4W R;  2QCT A;  1FQ1 A;  2CNG A;  3QCC A;  2OOQ A;  1YPT A;  2HCM A;  3F41 A;  1OHD A;  1Q6N A;  4JMJ A;  4RH9 A;  5BX1 A;  4QAP A;  2CMB A;  3I80 A;  1GWZ A;  2P4D A;  5K22 A;  4YR8 B;  4GE5 A;  2QDM A;  3ZMQ A;  2QBS A;  4KYR A;  2OZ5 A;  3QKQ A;  2PA5 A;  4BUB A;  1P3D A;  2VEX A;  5AWX A;  1YGU A;  4Y14 A;  2CNE A;  3V0F A;  2AM2 A;  3I7Z A;  1W78 A;  3BLT A;  3CWE A;  3ZM1 A;  3D44 A;  1MKP A;  5KA2 A;  1JBV A;  2BGD A;  3ZM0 A;  4D3R A;  5BZX A;  3BM8 A;  1JF7 A;  2XPC A;  4CVM A;  4R0T A;  2J16 A;  1EEO A;  3EAX A;  1T48 A;  5KAC A;  2F6V A;  4RI4 A;  1NL9 A;  3S4O A;  1C87 A;  1OEM X;  3GXH A;  2BZL A;  2C7S A;  2CM2 A;  3A5K A;  2H02 A;  1J4X A;  2HNQ A;  4I8N A;  4OHL A;  2I3U A;  2A3K A;  3QCJ A;  4PYH A;  3QCF A;  4BJO A;  1C88 A;  4JBC A;  1ZCK A;  1G1H A;  2B4U A;  3D1Q A;  2VEY A;  2JFF A;  4C13 A;  2I6O A;  3MVN A;  1E8C A;  2G59 A;  4OHI A;  2WTZ A;  4NYH A;  5KA7 A;  1YFO A;  1C85 A;  2VTD A;  2M3V A;  1P31 A;  1NZ7 A;  4OHD A;  4QUM A;  4ICZ A;  4KYQ A;  1U26 A;  2UUP A;  2Q47 A;  2H4G A;  2ESB A;  3GXG A;  1PTY A;  3RO1 A;  2CM8 A;  1Q6J A;  2I42 A;  5KA4 A;  3NME A;  2HC1 A;  2B3O A;  1R6H A;  3F9A A;  1I9S A;  4R30 A;  2J17 A;  1C83 A;  4GE2 A;  3RGQ A;  2QCJ A;  5K23 A;  1OEV A;  3V0I A;  3HN7 A;  4H1O A;  2CMA A;  2OUD A;  2F70 A;  2GJT A;  3O4S A;  4ERC A;  2CM3 A;  2FJM A;  1I57 A;  2DXP A;  1PA9 A;  1PA1 A;  2NV5 A;  4GFV A;  1AAX A;  2Q05 A;  3QKP A;  1YZ4 A;  1LQF A;  2HB1 A;  2QDP A;  1WRM A;  4C12 A;  1PTU A;  1XBO A;  3S3E A;  1NNY A;  2B4O A;  2F6Z A;  1YTS A;  1PYN A;  3B7O A;  4RI5 A;  3SME A;  1PTV A;  3LK7 A;  4B04 A;  1Q6T A;  2ZMM A;  5KA0 A;  3EU0 A;  4D3P A;  3O4T A;  4MBB A;  4WU3 A;  3QCN A;  1BZJ A;  3S3F A;  1OET A;  3UAG A;  3V0G A;  1OHE A;  3F99 A;  4GS0 A;  3QCB A;  5KA9 A;  1YTN A;  2QEP A;  1L8G A;  3QCG A;  1PTT A;  1Q6M A;  3V0H A;  2FH7 A;  1BZC A;  4KI9 A;  2FJN A;  5IBS A;  2Y67 A;  3EZZ A;  1G7F A;  5K9V A;  1WAX A;  4J51 A;  2JFG A;  4ZI4 A;  3D42 A;  3RGO A;  3OMH A;  3QCD A;  2I3R A;  5KAA A;  3O3L A;  3NRS A;  2AZR A;  5EHP A;  3A5J A;  3CM3 A;  1EEH A;  2QBR A;  2NT2 A;  3AWF A;  2GWO A;  1XXP A;  4UAG A;  4IKC A;  2AHS A;  2CNH A;  2BGE A;  4NWG A;  2B49 A;  2VEV A;  5BUG A;  2HC2 A;  2Y68 A;  2PI7 A;  1OES A;  1PH0 A;  3N2A A;  1FPR A;  2NLK A;  2IMG A;  1J6U A;  3PYZ A;  1KAV A;  3QCK A;  3OLR A;  5K24 A;  3ZM6 A;  4YAA A;  2GP0 A;  1YN9 A;  1FGS A;  1RPM A;  3F9B A;  1YTW A;  1YGR A;  2I6I A;  4ZIY A;  4NND A;  1NWE A;  4TVV A;  2MBC A;  4H34 A;  1QZ0 A;  1EEN A;  3ZM5 A;  1GQQ A;  2F6T A;  5KAB A;  2B4S A;  2I4E A;  2BIJ A;  5K9W A;  4S0G A;  1OEU A;  4OHE A;  2QBQ A;  2I1Y A;  2HNP A;  4BUC A;  5IBM A;  1G4U S;  1Q6S A;  4NWF A;  3MMJ A;  1RXD A;  2QBP A;  2Y1O A;  4GWF A;  3AWG A;  3BLU A;  1WCH A;  1C84 A;  2E0T A;  2B07 A;  1SUG A;  2GCB A;  4JNB A;  3MOZ A;  4R0S A;  2PT0 A;  1D5R A;  3LJ8 A;  5K25 A;  1P15 A;  1JLN A;  5EHR A;  1ZCL A;  1NO6 A;  2Y2F A;  4D3Q A;  3D1H A;  1ZZW A;  2F6W A;  3O4U A;  3V0E A;  2ZN7 A;  2XJA A;  4GE6 A;  1G1G A;  3S3K A;  3ZM2 A;  4ZN5 A;  1ECV A;  4CVL A;  2WGP A;  1BZH A;  2I6J A;  1I9T A;  2CNF A;  3QCH A;  1T4J A;  1OHC A;  2B4P A;  4HJP A;  5A5E A;  4QF5 A;  3S3H A;  2GCA A;  5M43 A;  3PS5 A;  3ZL8 A;  2H4K A;  2J16 B;  4GFU A;  3EMU A;  2F71 A;  1OEO X;  2VEU A;  2RF6 A;  4QDI A;  2NZ6 A;  2CMC A;  5I6V A;  1ZC0 A;  3D1O A;  2I6M A;  4HJQ A;  1Q1M A;  1LAR A;  2CNI A;  3ZV2 A;  2F6F A;  1GG4 A;  2X5O A;  2G6Z A;  3RZ2 A;  1XRI A;  4QUN A;  4DGP A;  3QCL A;  3N0A A;  4RDD A;  1UAG A;  3M4U A;  1NWL A;  1XM2 A;  2NTA A;  5KAD A;  1E0D A;  1LYV A;  2YDU A;  3ZM3 A;  4WTY A;  3QCI A;  1C86 A; 
#chains in the Genus database with same CATH homology
 4CVK A;  1O5Z A;  5A5F A;  2JFG A;  3MVN A;  2WJP A;  4CVL A;  2JFH A;  1E8C A;  2GC5 A;  1GQY A;  2Y1O A;  2GCB A;  2Y68 A;  4BUB A;  2VOR A;  1P3D A;  2WTZ A;  3ZM5 A;  1GG4 A;  3N2A A;  3UAG A;  1GQQ A;  3QCZ A;  2X5O A;  1J6U A;  2VOS A;  3PYZ A;  2VTD A;  3ZM6 A;  4QDI A;  2AM2 A;  1W7K A;  2GC6 A;  3NRS A;  1P31 A;  1FGS A;  4C12 A;  2F00 A;  1W78 A;  3HN7 A;  4QF5 A;  4HV4 A;  5A5E A;  2Y66 A;  4C13 A;  1UAG A;  2GCA A;  1EEH A;  2AM1 A;  1JBV A;  4ZIY A;  3ZL8 A;  2Y67 A;  2UAG A;  1JBW A;  4BUC A;  2XJA A;  1E0D A;  2XPC A;  4UAG A;  2UUP A;  4CVM A;  3LK7 A;  2VTE A;  2JFF A;  2UUO A; 
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