1K8TA

Crystal structure of the adenylyl cyclase domain of anthrax edema factor (ef)
Total Genus 147
50100150200250300350400450020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
147
sequence length
509
structure length
498
Chain Sequence
DRIDVLKGEKALKASGLVPEHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAVKYTGYTGGDVVNHGTNEIFIINPEGEFILTKNWEMTGRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSSNVGVYKDSGDKDEFAKKESVKKIAGYLSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKSNIEFKLLYKQLNFTENETDNFEVFQKIIDE
50100150200250300350400450400300200100
050100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (309-322)TI1 (332-335)S2 (324-328)S4 (398-402)TIV2 (357-360)EMPTYTI3 (358-361)S8 (453-457)AH3 (335-341)TI5 (458-461)TVIII1 (365-368)S7 (442-447)TVIII2 (371-374)TIV3 (373-376)AH4 (377-394)TI4 (439-442)TVIII4 (448-451)S9 (472-473)S10 (475-480)S11 (485-489)TIV1 (292-295)AH1 (298-305)S3 (344-345)3H1 (368-370)TII1 (360-363)AH5 (407-415)S5 (424-427)TIV4 (426-429)S6 (430-435)TIV5 (447-450)TI6 (463-466)TIV6 (480-483)TIV7 (481-484)S12 (494-499)S1 (296-297)TI'1 (394-397)TI2 (347-350)Updating...
connected with : NaN
molecule tags Toxin,lyase
source organism Bacillus anthracis
publication title Structural basis for the activation of anthrax adenylyl cyclase exotoxin by calmodulin
pubmed doi rcsb
molecule keywords CALMODULIN-SENSITIVE ADENYLATE CYCLASE
total genus 147
structure length 498
sequence length 509
ec nomenclature ec 4.6.1.1: Adenylate cyclase.
pdb deposition date 2001-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03497 Anthrax_toxA Anthrax toxin LF subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.60 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 1k8tA03
3.90.1760.10 Alpha Beta Alpha-Beta Complex Adenylylcyclase toxin fold Anthrax toxin, edema factor, central domain 1k8tA02
1LVCA 1PK0A 1S26A 1K93A 2COLA 1YRUA 1XFYA 1Y0VA 1SK6A 1XFVA 1XFUA 1K8TA 1YRTA 1ZOTA 1K90A 1XFXA 1XFZA 1XFWA
chains in the Genus database with same CATH superfamily
2FP1A 2CJ5A 2BU8A 1K93A 3X0XA 2GBBA 4L3XA 3BNHA 2OR0A 3B96A 5GJVE 2AO2A 3F29A 3MDEA 2D29A 3MKHA 1WS9A 3BNFA 2Q8HA 3FCJA 4MP7A 2OJQA 2EBHX 3SWOA 1YRUA 3EOMA 4JIOA 2CJ8A 4ZXVA 2CJ4A 2OEXA 5GJWE 2XS8A 4ZYJA 5M4PA 4U83A 1XFXA 1XFZA 4J1VA 3X0YA 4DOYA 1IVHA 3MPIA 4X28A 4RM7A 1Y8NA 1RP3A 5B5VA 1Y0VA 4X28C 4HKRA 4L1FA 2YYKA 1SIQA 4KS9A 4LQQB 2E0AA 3LGQA 3MXLA 3CE2A 2R0MA 1PI1A 1Y8OA 3C3LA 2COLA 4P79A 2A1TA 4N5FA 3FO3A 2VF1A 4H81A 1K8TA 1XG2B 3D9GA 4KSFA 1EGDA 2REHA 3R7KA 4E00A 4AKIA 1GKXA 1K90A 3OWAA 4H7QA 2Z1QA 2R03A 1S26A 2ZDYA 3D9FA 4HR3A 4AI6A 4V25A 4E01A 3C2PA 4G5EA 3EONA 5K3IA 2ZKJA 2HJNA 1FS7A 1EGEA 2OT4A 4HKSA 3TZ0A 4KCFA 3Q22A 3BNJA 1Y8PA 2CX9A 5B5WA 2JBSA 2PO4A 1XFVA 4FF4A 4Q17A 2Q8FA 1R2JA 3HWCA 4MPNA 3MDDA 4Q1OA 4NXLA 3CRKA 2Q8IA 4QICA 3LG1A 2RF7A 3D9EA 3N0RA 5BRKA 5M4KA 3UU9A 1FS9A 1EGCA 2E81A 1XFYA 2RFQA 3II9A 1SK6A 4L3YA 2DVLA 4V26A 2ZDXA 4Q0TA 1X90A 4JEKA 2R05A 4AKGA 3X29A 1RJ1A 4L38A 1ZOTA 3SXQA 1GU6A 3UBRA 4Q5BA 1SIRA 1XFUA 2ZAFA 2RDZA 2XS1A 4KTOA 2VR0A 2EBFX 2YYIA 2JBRA 2E80A 4F0XA 2JIFA 3S7WA 5M4NA 2AZEA 1PK0A 4KSAA 1OAHA 1BUCA 2C12A 3MMOA 5K3JA 3TZ2A 1RX0A 3Q23A 4FF3A 1U8VA 2BU5A 2F6LA 2LFWA 1XFWA 2OEVA 4W9UA 3D2RA 4L3ZA 4FF1A 2QR4A 2DDHA 4M9AA 4XVXA 1GJVA 2BTZA 3NF4A 2Q8GA 2BU2A 1LVCA 1QDBA 1RJ4A 3D6BA 3D9DA 3KMLA 4LQSB 2UXWA 3P4TA 5K3HA 2CJ7A 1JQIA 4FF2A 4IV6A 2IX5A 3M9VA 4JIZA 4H85A 4P13A 2YYMA 3AFEA 3BNGA 3D1IA 4Q4UA 2BU6A 3RKHA 5K3GA 3VKGA 2JBTA 3AFFA 4WJYA 3TZ5A 2FONA 2YYGA 2YGWA 3SCEA 3PFDA 4E02A 2PNRA 3TZ4A 5J71A 1X8ZA 2EBAA 3MPJA 2IX6A 1T9GA 4FZ4A 4Q5CA 3GNCA 3TTBA 2BU7A 3GQTA 5M4MA 3L1TA 2YYLA 2FP2A 4DZYA 5B6BA 3OIBA 1JM6A 1IS2A 1R3BA 4MPCA 4OO2A 5BRMA 3Q0AA 1UKWA 2CJ6A 1GKZA 4IRNA 3CRLA 1FS8A 3GM6A 2XQRB 4O5MA 3Q24A 3C46A 2PG0A 3TORA 4AKHA 3VKHA 2R02A 4G97A 3SF6A 2C0UA 5J6AA 2ZO5A 4MP2A 3VADA 2EC5A 1UDYA 1W07A 1X91A 2R0NA 2WBIA 1YRTA 1SC5A 2VIGA 4MPEA 2YYJA 2J7AA 3OWMA
chains in the Genus database with same CATH topology
2FP1A 1S26A 1K93A 4AI6A 3VKGA 2GBBA 1XFUA 5GJVE 2AO2A 2EBFX 4HKSA 3C2PA 2YGWA 3Q22A 4F0XA 2AZEA 1PK0A 4KSAA 1YRUA 4FZ4A 2EBHX 2PO4A 1XFVA 4FF4A 3Q23A 5GJWE 2F6LA 4FF3A 2LFWA 1XFXA 1XFZA 1XFWA 2FP2A 3Q0AA 1RP3A 1Y0VA 4QICA 4FF1A 2QR4A 4HKRA 3C46A 4KS9A 3N0RA 3Q24A 4AKHA 3VKHA 3CE2A 1LVCA 3C3LA 4G97A 3KMLA 4P79A 2COLA 1XFYA 1SK6A 2EC5A 2VF1A 4FF2A 4KSFA 1K8TA 4AKIA 1YRTA 4AKGA 1ZOTA 1SC5A 3X29A 1K90A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LVC A;  1PK0 A;  1S26 A;  1K93 A;  2COL A;  1YRU A;  1XFY A;  1Y0V A;  1SK6 A;  1XFV A;  1XFU A;  1K8T A;  1YRT A;  1ZOT A;  1K90 A;  1XFX A;  1XFZ A;  1XFW A; 
#chains in the Genus database with same CATH topology
 2FP1 A;  2CJ5 A;  2BU8 A;  1K93 A;  3X0X A;  2GBB A;  4L3X A;  3BNH A;  2OR0 A;  3B96 A;  5GJV E;  2AO2 A;  3F29 A;  3MDE A;  2D29 A;  3MKH A;  1WS9 A;  3BNF A;  2Q8H A;  3FCJ A;  4MP7 A;  2OJQ A;  2EBH X;  3SWO A;  1YRU A;  3EOM A;  4JIO A;  2CJ8 A;  4ZXV A;  2CJ4 A;  2OEX A;  5GJW E;  2XS8 A;  4ZYJ A;  5M4P A;  4U83 A;  1XFX A;  1XFZ A;  4J1V A;  3X0Y A;  4DOY A;  1IVH A;  3MPI A;  4X28 A;  4RM7 A;  1Y8N A;  1RP3 A;  5B5V A;  1Y0V A;  4X28 C;  4HKR A;  4L1F A;  2YYK A;  1SIQ A;  4KS9 A;  4LQQ B;  2E0A A;  3LGQ A;  3MXL A;  3CE2 A;  2R0M A;  1PI1 A;  1Y8O A;  3C3L A;  2COL A;  4P79 A;  2A1T A;  4N5F A;  3FO3 A;  2VF1 A;  4H81 A;  1K8T A;  1XG2 B;  3D9G A;  4KSF A;  1EGD A;  2REH A;  3R7K A;  4E00 A;  4AKI A;  1GKX A;  1K90 A;  3OWA A;  4H7Q A;  2Z1Q A;  2R03 A;  1S26 A;  2ZDY A;  3D9F A;  4HR3 A;  4AI6 A;  4V25 A;  4E01 A;  3C2P A;  4G5E A;  3EON A;  5K3I A;  2ZKJ A;  2HJN A;  1FS7 A;  1EGE A;  2OT4 A;  4HKS A;  3TZ0 A;  4KCF A;  3Q22 A;  3BNJ A;  1Y8P A;  2CX9 A;  5B5W A;  2JBS A;  2PO4 A;  1XFV A;  4FF4 A;  4Q17 A;  2Q8F A;  1R2J A;  3HWC A;  4MPN A;  3MDD A;  4Q1O A;  4NXL A;  3CRK A;  2Q8I A;  4QIC A;  3LG1 A;  2RF7 A;  3D9E A;  3N0R A;  5BRK A;  5M4K A;  3UU9 A;  1FS9 A;  1EGC A;  2E81 A;  1XFY A;  2RFQ A;  3II9 A;  1SK6 A;  4L3Y A;  2DVL A;  4V26 A;  2ZDX A;  4Q0T A;  1X90 A;  4JEK A;  2R05 A;  4AKG A;  3X29 A;  1RJ1 A;  4L38 A;  1ZOT A;  3SXQ A;  1GU6 A;  3UBR A;  4Q5B A;  1SIR A;  1XFU A;  2ZAF A;  2RDZ A;  2XS1 A;  4KTO A;  2VR0 A;  2EBF X;  2YYI A;  2JBR A;  2E80 A;  4F0X A;  2JIF A;  3S7W A;  5M4N A;  2AZE A;  1PK0 A;  4KSA A;  1OAH A;  1BUC A;  2C12 A;  3MMO A;  5K3J A;  3TZ2 A;  1RX0 A;  3Q23 A;  4FF3 A;  1U8V A;  2BU5 A;  2F6L A;  2LFW A;  1XFW A;  2OEV A;  4W9U A;  3D2R A;  4L3Z A;  4FF1 A;  2QR4 A;  2DDH A;  4M9A A;  4XVX A;  1GJV A;  2BTZ A;  3NF4 A;  2Q8G A;  2BU2 A;  1LVC A;  1QDB A;  1RJ4 A;  3D6B A;  3D9D A;  3KML A;  4LQS B;  2UXW A;  3P4T A;  5K3H A;  2CJ7 A;  1JQI A;  4FF2 A;  4IV6 A;  2IX5 A;  3M9V A;  4JIZ A;  4H85 A;  4P13 A;  2YYM A;  3AFE A;  3BNG A;  3D1I A;  4Q4U A;  2BU6 A;  3RKH A;  5K3G A;  3VKG A;  2JBT A;  3AFF A;  4WJY A;  3TZ5 A;  2FON A;  2YYG A;  2YGW A;  3SCE A;  3PFD A;  4E02 A;  2PNR A;  3TZ4 A;  5J71 A;  1X8Z A;  2EBA A;  3MPJ A;  2IX6 A;  1T9G A;  4FZ4 A;  4Q5C A;  3GNC A;  3TTB A;  2BU7 A;  3GQT A;  5M4M A;  3L1T A;  2YYL A;  2FP2 A;  4DZY A;  5B6B A;  3OIB A;  1JM6 A;  1IS2 A;  1R3B A;  4MPC A;  4OO2 A;  5BRM A;  3Q0A A;  1UKW A;  2CJ6 A;  1GKZ A;  4IRN A;  3CRL A;  1FS8 A;  3GM6 A;  2XQR B;  4O5M A;  3Q24 A;  3C46 A;  2PG0 A;  3TOR A;  4AKH A;  3VKH A;  2R02 A;  4G97 A;  3SF6 A;  2C0U A;  5J6A A;  2ZO5 A;  4MP2 A;  3VAD A;  2EC5 A;  1UDY A;  1W07 A;  1X91 A;  2R0N A;  2WBI A;  1YRT A;  1SC5 A;  2VIG A;  4MPE A;  2YYJ A;  2J7A A;  3OWM A; 
#chains in the Genus database with same CATH homology
 2FP1 A;  1S26 A;  1K93 A;  4AI6 A;  3VKG A;  2GBB A;  1XFU A;  5GJV E;  2AO2 A;  2EBF X;  4HKS A;  3C2P A;  2YGW A;  3Q22 A;  4F0X A;  2AZE A;  1PK0 A;  4KSA A;  1YRU A;  4FZ4 A;  2EBH X;  2PO4 A;  1XFV A;  4FF4 A;  3Q23 A;  5GJW E;  2F6L A;  4FF3 A;  2LFW A;  1XFX A;  1XFZ A;  1XFW A;  2FP2 A;  3Q0A A;  1RP3 A;  1Y0V A;  4QIC A;  4FF1 A;  2QR4 A;  4HKR A;  3C46 A;  4KS9 A;  3N0R A;  3Q24 A;  4AKH A;  3VKH A;  3CE2 A;  1LVC A;  3C3L A;  4G97 A;  3KML A;  4P79 A;  2COL A;  1XFY A;  1SK6 A;  2EC5 A;  2VF1 A;  4FF2 A;  4KSF A;  1K8T A;  4AKI A;  1YRT A;  4AKG A;  1ZOT A;  1SC5 A;  3X29 A;  1K90 A; 
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