The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
57
|
sequence length |
156
|
structure length |
156
|
Chain Sequence |
QQCGQTAPLINERLSYMKDVAGYKAENHLPIEDRIQEEKVINSAMAQAESLGLNGESIKPLMVAQINAAKAIQYRYRADWLSQPEPGWQPKPLDDVRANIGELSTKILEQIAEELKTCKPAEMGDKAHFINTIRQHNLTSADVEAIFSTFNQVKLK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Isomerase
|
| source organism |
Yersinia pestis biovar microtus str. 91001
|
| publication title |
A comparative biochemical and structural analysis of the intracellular chorismate mutase (Rv0948c) from Mycobacterium tuberculosis H(37)R(v) and the secreted chorismate mutase (y2828) from Yersinia pestis.
pubmed doi rcsb |
| molecule keywords |
putative chorismate mutase
|
| total genus |
57
|
| structure length |
156
|
| sequence length |
156
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
5.4.99.5: Chorismate mutase. |
| pdb deposition date | 2006-03-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01817 | CM_2 | Chorismate mutase type II |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 |
#chains in the Genus database with same CATH superfamily 2GBB A; 2AO2 A; 2F6L A; 2FP1 A; 2FP2 A; #chains in the Genus database with same CATH topology 1K8T A; 1EGE A; 4MP2 A; 5BRM A; 3X0X A; 2E0A A; 2CJ8 A; 3VAD A; 4FF2 A; 3EON A; 3FO3 A; 3EOM A; 3D6B A; 5B5W A; 2E80 A; 4XVX A; 3C2P A; 4JIO A; 2Q8I A; 2BU7 A; 3PFD A; 3FCJ A; 2XS8 A; 1X91 A; 3MPJ A; 2JBS A; 4G97 A; 3P4T A; 4L1F A; 4L3Y A; 2BU6 A; 4X28 C; 1FS7 A; 2YGW A; 5M4M A; 1W07 A; 1FS8 A; 3TZ0 A; 4F0X A; 4O5M A; 4Q5C A; 2HJN A; 4HR3 A; 1BUC A; 1SIR A; 3MDD A; 1GKZ A; 3M9V A; 2R02 A; 1Y8N A; 1JM6 A; 2YYK A; 3BNJ A; 4KCF A; 2RDZ A; 4MPE A; 3HWC A; 3RKH A; 3C46 A; 3VKG A; 3Q22 A; 1IVH A; 2CJ6 A; 3D9G A; 3AFF A; 3NF4 A; 4P79 A; 4W9U A; 3D1I A; 2XS1 A; 2PG0 A; 3MPI A; 2YYM A; 5M4N A; 3LG1 A; 4MPN A; 2R05 A; 4AI6 A; 2FON A; 2LFW A; 2ZAF A; 2YYG A; 4X28 A; 3TZ4 A; 2RF7 A; 3F29 A; 2CJ4 A; 1X8Z A; 3D2R A; 4QIC A; 5K3I A; 1GU6 A; 5J71 A; 1R2J A; 2R0M A; 2CJ7 A; 2PO4 A; 1PI1 A; 4AKG A; 4NXL A; 1R3B A; 4LQS B; 2Q8G A; 2YYI A; 4KTO A; 2D29 A; 3X0Y A; 1EGD A; 3R7K A; 3BNH A; 5M4K A; 1OAH A; 4FF4 A; 2EBH X; 1XFV A; 4Q5B A; 2IX6 A; 3Q0A A; 4AKH A; 4IRN A; 3SF6 A; 1JQI A; 1Y0V A; 2BU5 A; 2JBR A; 5GJV E; 5K3G A; 3VKH A; 1XFX A; 3II9 A; 4H81 A; 4M9A A; 4ZXV A; 2DVL A; 3SCE A; 4JEK A; 5M4P A; 2C0U A; 2FP2 A; 2OEX A; 4E00 A; 3GM6 A; 2ZDY A; 2DDH A; 4HKS A; 4L3X A; 1XG2 B; 2Q8F A; 2UXW A; 5GJW E; 1XFW A; 4AKI A; 3KML A; 3LGQ A; 1LVC A; 4G5E A; 3TZ2 A; 3UU9 A; 1EGC A; 1GJV A; 4KSA A; 2F6L A; 4IV6 A; 3TZ5 A; 2BTZ A; 2OEV A; 4V25 A; 1RX0 A; 2RFQ A; 4L3Z A; 2PNR A; 2R0N A; 3X29 A; 3MMO A; 1QDB A; 3MKH A; 3GNC A; 3MDE A; 1RJ1 A; 2GBB A; 4J1V A; 1K93 A; 1UDY A; 2JIF A; 4JIZ A; 4KSF A; 2OR0 A; 3MXL A; 2CX9 A; 3D9D A; 3GQT A; 1WS9 A; 2EBF X; 1RP3 A; 1FS9 A; 4P13 A; 4L38 A; 4OO2 A; 1X90 A; 5BRK A; 4HKR A; 4N5F A; 2IX5 A; 4Q17 A; 3TOR A; 1SIQ A; 1XFU A; 2A1T A; 4RM7 A; 4Q0T A; 4WJY A; 3SXQ A; 4U83 A; 3CE2 A; 4LQQ B; 3TTB A; 3CRK A; 2R03 A; 3L1T A; 3OWA A; 3C3L A; 2XQR B; 1S26 A; 4KS9 A; 4ZYJ A; 2REH A; 2ZO5 A; 1RJ4 A; 2OJQ A; 4Q1O A; 4DOY A; 1UKW A; 3SWO A; 4MPC A; 1SK6 A; 4MP7 A; 4FF1 A; 3D9F A; 2E81 A; 4E02 A; 4FF3 A; 5J6A A; 5B6B A; 3D9E A; 1T9G A; 3S7W A; 2ZKJ A; 3N0R A; 3Q23 A; 1Y8P A; 2FP1 A; 3AFE A; 2AZE A; 3BNF A; 2ZDX A; 3BNG A; 1XFZ A; 1PK0 A; 1K90 A; 2CJ5 A; 2YYJ A; 4FZ4 A; 2BU8 A; 4Q4U A; 5B5V A; 1SC5 A; 2C12 A; 5K3J A; 2Q8H A; 3UBR A; 2VR0 A; 4E01 A; 5K3H A; 4H85 A; 1GKX A; 1Y8O A; 2EBA A; 4DZY A; 3CRL A; 2J7A A; 2BU2 A; 4V26 A; 2JBT A; 2VF1 A; 2YYL A; 1XFY A; 2QR4 A; 2WBI A; 3OWM A; 2AO2 A; 1U8V A; 2Z1Q A; 3B96 A; 4H7Q A; 3OIB A; 2OT4 A; 3Q24 A; 2VIG A; 1IS2 A; 2EC5 A; #chains in the Genus database with same CATH homology 4HKS A; 1K8T A; 3C3L A; 4KS9 A; 1S26 A; 5GJW E; 4FF2 A; 1XFW A; 2LFW A; 4AKI A; 3KML A; 1SK6 A; 4FF1 A; 1LVC A; 4QIC A; 4G97 A; 4FF3 A; 4KSA A; 2F6L A; 2PO4 A; 2YGW A; 3Q23 A; 4AKG A; 3N0R A; 4AI6 A; 2FP1 A; 2AZE A; 4F0X A; 1XFZ A; 1PK0 A; 1K90 A; 2GBB A; 4FZ4 A; 2EBH X; 1K93 A; 1XFV A; 4KSF A; 1SC5 A; 3X29 A; 3Q0A A; 4AKH A; 1Y0V A; 2EBF X; 5GJV E; 3C46 A; 4FF4 A; 1RP3 A; 1XFX A; 3VKH A; 3VKG A; 3C2P A; 2VF1 A; 3Q22 A; 1XFY A; 2QR4 A; 4HKR A; 2AO2 A; 4P79 A; 1XFU A; 3Q24 A; 3CE2 A; 2FP2 A; 2EC5 A;
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