2AZEA

Structure of the rb c-terminal domain bound to an e2f1-dp1 heterodimer
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
149
structure length
149
Chain Sequence
b'FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGVF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Transcription factor Dp-1
publication title Structure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Cell cycle, transcription
total genus 41
structure length 149
sequence length 149
ec nomenclature
pdb deposition date 2005-09-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08781 DP Transcription factor DP
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.80 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 2azeA01
2AZEA
chains in the Genus database with same CATH superfamily
2ZDXA 3FO3A 4F0XA 2CJ4A 1PK0A 4X28C 2XS8A 4MP7A 3X29A 3VADA 4J1VA 2EBHX 3II9A 5J71A 2FP2A 4MP2A 3OIBA 1GKZA 2EBFX 2WBIA 3RKHA 3UBRA 5M4PA 3C46A 4P79A 2PG0A 4G97A 5K3JA 2FONA 4L3ZA 3HWCA 1UKWA 1K93A 3SF6A 4KSAA 2AZEA 3X0YA 2VF1A 1EGDA 4Q5CA 3TZ5A 1X91A 2RF7A 2CJ6A 4L3YA 3D2RA 4XVXA 4H81A 3SCEA 1JQIA 1EGEA 1BUCA 4DOYA 5K3IA 3TTBA 4AKGA 2CJ5A 1XFVA 3AFEA 2JBSA 5BRMA 2R05A 2DDHA 2UXWA 2EC5A 1UDYA 4AI6A 1GU6A 1GJVA 2GBBA 2ZDYA 4KTOA 2BTZA 3F29A 2BU8A 5M4KA 3VKHA 3SWOA 2YYIA 3D1IA 5BRKA 3S7WA 2OR0A 1XFYA 3TZ2A 4L3XA 2VIGA 4MPNA 1FS9A 2YYJA 2ZAFA 1XG2B 2AO2A 2E81A 2FP1A 4E01A 1X90A 1W07A 2Q8IA 2LFWA 4L1FA 1RJ4A 5B5WA 2CJ7A 2VR0A 5M4MA 1IS2A 2BU6A 2OT4A 1IVHA 3MPJA 2Q8GA 4FF3A 3VKGA 2F6LA 2J7AA 3LG1A 4Q17A 2Q8HA 2Q8FA 3Q22A 1FS8A 2D29A 2DVLA 2JBTA 3MPIA 4FF1A 2BU7A 3FCJA 3OWMA 4LQSB 2REHA 3CRKA 4HKRA 2R03A 2IX5A 3D6BA 2XS1A 2BU5A 2YYLA 2EBAA 4FF4A 3D9DA 1EGCA 1XFZA 3OWAA 3BNGA 2OEVA 2YYGA 3CRLA 4JEKA 4M9AA 4O5MA 2CX9A 1GKXA 4Q5BA 4ZXVA 3M9VA 3BNFA 3AFFA 3L1TA 3PFDA 2Z1QA 5K3HA 2PO4A 3P4TA 4IRNA 4JIOA 1JM6A 5GJWE 2YYKA 3D9FA 4KS9A 2PNRA 3N0RA 3R7KA 4ZYJA 4Q4UA 4AKIA 4V25A 3CE2A 5K3GA 4Q0TA 2QR4A 1Y8PA 3D9GA 4WJYA 2CJ8A 1LVCA 3MMOA 4MPCA 1SIRA 3C3LA 4NXLA 1SC5A 2R02A 3TZ4A 4N5FA 3MKHA 4IV6A 4P13A 3MDDA 2A1TA 4H85A 2ZO5A 3UU9A 1RJ1A 2BU2A 3C2PA 3Q24A 4KCFA 2E80A 4JIZA 4HR3A 4KSFA 2JBRA 2RFQA 4G5EA 2RDZA 3Q23A 3GQTA 4FZ4A 1K90A 1S26A 5B5VA 4AKHA 5M4NA 1X8ZA 1Y8OA 3Q0AA 1RX0A 1R3BA 1XFXA 4DZYA 1RP3A 2IX6A 4E00A 3MXLA 4W9UA 3D9EA 3GM6A 2C0UA 3NF4A 4QICA 3TORA 3B96A 3TZ0A 2R0MA 1Y0VA 2ZKJA 1Y8NA 1QDBA 4RM7A 3X0XA 4L38A 1SK6A 3KMLA 1SIQA 2OJQA 2E0AA 4Q1OA 4V26A 5B6BA 2R0NA 3SXQA 1T9GA 1K8TA 3EONA 3LGQA 4U83A 3BNHA 3BNJA 2HJNA 3MDEA 4MPEA 1WS9A 1R2JA 2YGWA 2YYMA 3GNCA 5J6AA 5GJVE 2XQRB 4OO2A 1XFWA 4HKSA 4H7QA 1PI1A 1FS7A 1U8VA 4X28A 4E02A 1XFUA 3EOMA 4FF2A 2JIFA 2OEXA 2C12A 1OAHA 4LQQB
chains in the Genus database with same CATH topology
1RP3A 2PO4A 5GJWE 1PK0A 4QICA 4F0XA 3Q24A 3X29A 4KS9A 3VKHA 3N0RA 2EBHX 4AKIA 1Y0VA 1XFYA 2FP2A 3CE2A 2EBFX 2QR4A 3C46A 2FP1A 2AO2A 1LVCA 1SK6A 3KMLA 4G97A 3C3LA 2LFWA 1SC5A 1K8TA 1K93A 4FF3A 4KSAA 3VKGA 2AZEA 2F6LA 2VF1A 2YGWA 3Q22A 5GJVE 3C2PA 4FF1A 4KSFA 1XFWA 4HKSA 4HKRA 3Q23A 1XFVA 4AKGA 4FZ4A 1K90A 4FF4A 1S26A 4FF2A 2EC5A 1XFUA 1XFZA 4AKHA 3Q0AA 4AI6A 2GBBA 1XFXA 4P79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AZE A; 
#chains in the Genus database with same CATH topology
 2ZDX A;  3FO3 A;  4F0X A;  2CJ4 A;  1PK0 A;  4X28 C;  2XS8 A;  4MP7 A;  3X29 A;  3VAD A;  4J1V A;  2EBH X;  3II9 A;  5J71 A;  2FP2 A;  4MP2 A;  3OIB A;  1GKZ A;  2EBF X;  2WBI A;  3RKH A;  3UBR A;  5M4P A;  3C46 A;  4P79 A;  2PG0 A;  4G97 A;  5K3J A;  2FON A;  4L3Z A;  3HWC A;  1UKW A;  1K93 A;  3SF6 A;  4KSA A;  2AZE A;  3X0Y A;  2VF1 A;  1EGD A;  4Q5C A;  3TZ5 A;  1X91 A;  2RF7 A;  2CJ6 A;  4L3Y A;  3D2R A;  4XVX A;  4H81 A;  3SCE A;  1JQI A;  1EGE A;  1BUC A;  4DOY A;  5K3I A;  3TTB A;  4AKG A;  2CJ5 A;  1XFV A;  3AFE A;  2JBS A;  5BRM A;  2R05 A;  2DDH A;  2UXW A;  2EC5 A;  1UDY A;  4AI6 A;  1GU6 A;  1GJV A;  2GBB A;  2ZDY A;  4KTO A;  2BTZ A;  3F29 A;  2BU8 A;  5M4K A;  3VKH A;  3SWO A;  2YYI A;  3D1I A;  5BRK A;  3S7W A;  2OR0 A;  1XFY A;  3TZ2 A;  4L3X A;  2VIG A;  4MPN A;  1FS9 A;  2YYJ A;  2ZAF A;  1XG2 B;  2AO2 A;  2E81 A;  2FP1 A;  4E01 A;  1X90 A;  1W07 A;  2Q8I A;  2LFW A;  4L1F A;  1RJ4 A;  5B5W A;  2CJ7 A;  2VR0 A;  5M4M A;  1IS2 A;  2BU6 A;  2OT4 A;  1IVH A;  3MPJ A;  2Q8G A;  4FF3 A;  3VKG A;  2F6L A;  2J7A A;  3LG1 A;  4Q17 A;  2Q8H A;  2Q8F A;  3Q22 A;  1FS8 A;  2D29 A;  2DVL A;  2JBT A;  3MPI A;  4FF1 A;  2BU7 A;  3FCJ A;  3OWM A;  4LQS B;  2REH A;  3CRK A;  4HKR A;  2R03 A;  2IX5 A;  3D6B A;  2XS1 A;  2BU5 A;  2YYL A;  2EBA A;  4FF4 A;  3D9D A;  1EGC A;  1XFZ A;  3OWA A;  3BNG A;  2OEV A;  2YYG A;  3CRL A;  4JEK A;  4M9A A;  4O5M A;  2CX9 A;  1GKX A;  4Q5B A;  4ZXV A;  3M9V A;  3BNF A;  3AFF A;  3L1T A;  3PFD A;  2Z1Q A;  5K3H A;  2PO4 A;  3P4T A;  4IRN A;  4JIO A;  1JM6 A;  5GJW E;  2YYK A;  3D9F A;  4KS9 A;  2PNR A;  3N0R A;  3R7K A;  4ZYJ A;  4Q4U A;  4AKI A;  4V25 A;  3CE2 A;  5K3G A;  4Q0T A;  2QR4 A;  1Y8P A;  3D9G A;  4WJY A;  2CJ8 A;  1LVC A;  3MMO A;  4MPC A;  1SIR A;  3C3L A;  4NXL A;  1SC5 A;  2R02 A;  3TZ4 A;  4N5F A;  3MKH A;  4IV6 A;  4P13 A;  3MDD A;  2A1T A;  4H85 A;  2ZO5 A;  3UU9 A;  1RJ1 A;  2BU2 A;  3C2P A;  3Q24 A;  4KCF A;  2E80 A;  4JIZ A;  4HR3 A;  4KSF A;  2JBR A;  2RFQ A;  4G5E A;  2RDZ A;  3Q23 A;  3GQT A;  4FZ4 A;  1K90 A;  1S26 A;  5B5V A;  4AKH A;  5M4N A;  1X8Z A;  1Y8O A;  3Q0A A;  1RX0 A;  1R3B A;  1XFX A;  4DZY A;  1RP3 A;  2IX6 A;  4E00 A;  3MXL A;  4W9U A;  3D9E A;  3GM6 A;  2C0U A;  3NF4 A;  4QIC A;  3TOR A;  3B96 A;  3TZ0 A;  2R0M A;  1Y0V A;  2ZKJ A;  1Y8N A;  1QDB A;  4RM7 A;  3X0X A;  4L38 A;  1SK6 A;  3KML A;  1SIQ A;  2OJQ A;  2E0A A;  4Q1O A;  4V26 A;  5B6B A;  2R0N A;  3SXQ A;  1T9G A;  1K8T A;  3EON A;  3LGQ A;  4U83 A;  3BNH A;  3BNJ A;  2HJN A;  3MDE A;  4MPE A;  1WS9 A;  1R2J A;  2YGW A;  2YYM A;  3GNC A;  5J6A A;  5GJV E;  2XQR B;  4OO2 A;  1XFW A;  4HKS A;  4H7Q A;  1PI1 A;  1FS7 A;  1U8V A;  4X28 A;  4E02 A;  1XFU A;  3EOM A;  4FF2 A;  2JIF A;  2OEX A;  2C12 A;  1OAH A;  4LQQ B; 
#chains in the Genus database with same CATH homology
 1RP3 A;  2PO4 A;  5GJW E;  1PK0 A;  4QIC A;  4F0X A;  3Q24 A;  3X29 A;  4KS9 A;  3VKH A;  3N0R A;  2EBH X;  4AKI A;  1Y0V A;  1XFY A;  2FP2 A;  3CE2 A;  2EBF X;  2QR4 A;  3C46 A;  2FP1 A;  2AO2 A;  1LVC A;  1SK6 A;  3KML A;  4G97 A;  3C3L A;  2LFW A;  1SC5 A;  1K8T A;  1K93 A;  4FF3 A;  4KSA A;  3VKG A;  2AZE A;  2F6L A;  2VF1 A;  2YGW A;  3Q22 A;  5GJV E;  3C2P A;  4FF1 A;  4KSF A;  1XFW A;  4HKS A;  4HKR A;  3Q23 A;  1XFV A;  4AKG A;  4FZ4 A;  1K90 A;  4FF4 A;  1S26 A;  4FF2 A;  2EC5 A;  1XFU A;  1XFZ A;  4AKH A;  3Q0A A;  4AI6 A;  2GBB A;  1XFX A;  4P79 A; 
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similar chains in the Genus database (?% sequence similarity)
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