The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
149
|
structure length |
149
|
Chain Sequence |
FAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGVF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release.
pubmed doi rcsb |
| molecule keywords |
Transcription factor Dp-1
|
| molecule tags |
Cell cycle, transcription
|
| source organism |
Homo sapiens
|
| total genus |
41
|
| structure length |
149
|
| sequence length |
149
|
| ec nomenclature | |
| pdb deposition date | 2005-09-10 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08781 | DP | Transcription factor DP |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 |
#chains in the Genus database with same CATH superfamily 2AZE A; #chains in the Genus database with same CATH topology 4L1F A; 1UKW A; 2OT4 A; 2YGW A; 3BNJ A; 2YYL A; 1BUC A; 2PG0 A; 1JQI A; 4DZY A; 2YYG A; 3BNF A; 3Q0A A; 4AI6 A; 1Y8O A; 5B5W A; 2YYK A; 3D9G A; 1Y8P A; 4MPC A; 2PO4 A; 1W07 A; 4FZ4 A; 4MP7 A; 2HJN A; 3MKH A; 4E00 A; 4KTO A; 3SWO A; 1GKX A; 3X0Y A; 4AKH A; 1S26 A; 2VF1 A; 1XG2 B; 3AFE A; 5B6B A; 2YYI A; 1K93 A; 1PI1 A; 2E80 A; 4J1V A; 4JIZ A; 2CJ4 A; 4RM7 A; 5K3J A; 4FF2 A; 2ZAF A; 2EBH X; 5K3G A; 4L3Y A; 4X28 A; 5M4P A; 2D29 A; 4O5M A; 3TZ4 A; 5M4M A; 4HKR A; 5J71 A; 4FF4 A; 2EBF X; 4AKG A; 1K8T A; 2EBA A; 4FF3 A; 5M4K A; 3OWM A; 3VKG A; 4G97 A; 4Q17 A; 1XFX A; 4V25 A; 2F6L A; 3RKH A; 1SIR A; 4KSF A; 3X0X A; 4V26 A; 3SCE A; 4AKI A; 3X29 A; 2BU7 A; 2WBI A; 1XFY A; 4KCF A; 1GJV A; 2CJ6 A; 2ZDX A; 2JBT A; 2OEV A; 3MMO A; 4Q1O A; 3C46 A; 4W9U A; 4H81 A; 1X91 A; 3CRK A; 4H85 A; 3GQT A; 1XFZ A; 4HKS A; 4IRN A; 4HR3 A; 3CRL A; 4KS9 A; 3MPJ A; 5BRM A; 3M9V A; 4MPN A; 3II9 A; 3VKH A; 2R05 A; 2RF7 A; 4Q5C A; 1FS8 A; 2Q8I A; 1RP3 A; 1X90 A; 2CJ5 A; 1XFV A; 3AFF A; 3D9F A; 3OWA A; 4F0X A; 2E0A A; 2BU5 A; 2GBB A; 1UDY A; 3C3L A; 2Q8F A; 2E81 A; 4Q0T A; 4P13 A; 2VR0 A; 2IX6 A; 3CE2 A; 3F29 A; 1EGD A; 2OR0 A; 3EON A; 3GNC A; 2CX9 A; 4P79 A; 4H7Q A; 4IV6 A; 1QDB A; 3SF6 A; 2BU2 A; 1GKZ A; 2ZKJ A; 2RFQ A; 3D9E A; 1LVC A; 1SC5 A; 4DOY A; 3SXQ A; 5GJW E; 1PK0 A; 4JEK A; 2UXW A; 4JIO A; 2VIG A; 3TOR A; 4E02 A; 3Q23 A; 1EGC A; 5GJV E; 2OEX A; 1T9G A; 1K90 A; 2ZDY A; 3P4T A; 4WJY A; 4OO2 A; 4N5F A; 1IVH A; 3Q22 A; 1R3B A; 2CJ7 A; 4KSA A; 3D1I A; 3TZ2 A; 1SIQ A; 5J6A A; 3PFD A; 3BNH A; 1JM6 A; 3Q24 A; 1IS2 A; 3B96 A; 2A1T A; 2XQR B; 3D6B A; 3MPI A; 3C2P A; 2JBS A; 2REH A; 3EOM A; 3OIB A; 4LQS B; 1RJ1 A; 3KML A; 4MPE A; 2ZO5 A; 5BRK A; 2R03 A; 2BU6 A; 2XS8 A; 1FS9 A; 3TZ5 A; 2AZE A; 4XVX A; 2DVL A; 2OJQ A; 1OAH A; 2Z1Q A; 3MDD A; 3TZ0 A; 2C0U A; 3N0R A; 5K3H A; 1Y8N A; 3FO3 A; 2EC5 A; 3BNG A; 5B5V A; 3D9D A; 3HWC A; 4FF1 A; 1SK6 A; 4L3Z A; 1WS9 A; 2LFW A; 2R0M A; 4Q5B A; 2Q8G A; 1XFU A; 1R2J A; 2CJ8 A; 3L1T A; 4QIC A; 3S7W A; 1FS7 A; 3D2R A; 4M9A A; 2R02 A; 2DDH A; 4L3X A; 4G5E A; 4Q4U A; 2RDZ A; 2FON A; 3GM6 A; 4E01 A; 4ZYJ A; 2FP2 A; 2IX5 A; 1RJ4 A; 2JBR A; 3MXL A; 3NF4 A; 4X28 C; 3UBR A; 5M4N A; 1RX0 A; 3TTB A; 4NXL A; 2PNR A; 3FCJ A; 2Q8H A; 2YYM A; 2YYJ A; 1EGE A; 1GU6 A; 1U8V A; 1XFW A; 2BU8 A; 2BTZ A; 2JIF A; 3MDE A; 3UU9 A; 3LGQ A; 3VAD A; 2J7A A; 1X8Z A; 4U83 A; 2C12 A; 2R0N A; 2XS1 A; 1Y0V A; 4L38 A; 4LQQ B; 2QR4 A; 2AO2 A; 3R7K A; 2FP1 A; 5K3I A; 4ZXV A; 4MP2 A; 3LG1 A; #chains in the Genus database with same CATH homology 1PK0 A; 4FF1 A; 1SK6 A; 2YGW A; 1XFY A; 2LFW A; 3Q23 A; 3C46 A; 1XFU A; 5GJV E; 3Q0A A; 4AI6 A; 4QIC A; 1K90 A; 1XFZ A; 4HKS A; 2PO4 A; 3Q22 A; 4FZ4 A; 4KS9 A; 4KSA A; 4AKH A; 1S26 A; 2FP2 A; 3VKH A; 2VF1 A; 1RP3 A; 1K93 A; 3Q24 A; 1XFV A; 4FF2 A; 4F0X A; 2EBH X; 2GBB A; 3C2P A; 3C3L A; 4HKR A; 3CE2 A; 4P79 A; 3KML A; 4FF4 A; 1XFW A; 2EBF X; 4AKG A; 1K8T A; 4FF3 A; 3VKG A; 4G97 A; 2AZE A; 1XFX A; 2F6L A; 3X29 A; 3N0R A; 1Y0V A; 1LVC A; 1SC5 A; 2QR4 A; 2AO2 A; 4KSF A; 2FP1 A; 4AKI A; 2EC5 A; 5GJW E;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
