4P79A

Crystal structure of mouse claudin-15
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
189
structure length
181
Chain Sequence
SEFMSVAVETFGFFMSALGLLMLGLTLSNSYWRVSTNTIFENLWYSCATDSLGVSNCWDFPSMLALSGYVQGCRALMITAILLGFLGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGWSASLLSILGGICVFSTAAAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords Claudin-15
publication title Crystal structure of a claudin provides insight into the architecture of tight junctions.
pubmed doi rcsb
source organism Mus musculus
total genus 59
structure length 181
sequence length 189
ec nomenclature
pdb deposition date 2014-03-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00822 PMP22_Claudin PMP-22/EMP/MP20/Claudin family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.150 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 4p79A00
5GJVE 3X29A 5GJWE 4P79A
chains in the Genus database with same CATH superfamily
2CJ4A 4MP2A 3D9FA 4IRNA 3VKHA 2EBHX 4HR3A 4DZYA 1K90A 2R0MA 2Z1QA 5BRKA 2AO2A 2UXWA 2ZAFA 4L1FA 5BRMA 5M4NA 1XFYA 3R7KA 2C12A 2CJ5A 1XFUA 1XG2B 4X28C 3RKHA 1X91A 2JBRA 4U83A 1R3BA 2YYJA 4JEKA 3TZ5A 1BUCA 3SWOA 4Q4UA 3KMLA 2YYLA 1Y8OA 2YYKA 2VR0A 1JM6A 4H81A 4XVXA 1XFWA 2IX6A 4DOYA 1T9GA 1X90A 4FF1A 1PI1A 4P13A 3LG1A 5K3GA 1K93A 4AKGA 2J7AA 3SXQA 1QDBA 2ZKJA 5B5WA 2R02A 3NF4A 3F29A 5J71A 2VF1A 3MDEA 3SF6A 3OWMA 2E0AA 2HJNA 4MP7A 1GKXA 4ZXVA 3HWCA 1XFZA 4KCFA 5M4KA 1UKWA 3GQTA 1R2JA 1W07A 4E00A 3VKGA 3M9VA 3C46A 2XS8A 3UU9A 2EC5A 4J1VA 2R0NA 3X0XA 3X0YA 3BNHA 3FO3A 3OIBA 2OEVA 4HKSA 4KSAA 2FONA 3EOMA 1RJ4A 4NXLA 4LQSB 2DDHA 5K3JA 1GJVA 3MPJA 1GU6A 4M9AA 4FF4A 1K8TA 4V25A 2PO4A 3N0RA 2Q8GA 5M4PA 1U8VA 2QR4A 3MPIA 1IVHA 4E01A 2EBAA 2E80A 4AKHA 2OT4A 2DVLA 3D2RA 4W9UA 1EGDA 3II9A 2OEXA 5K3HA 1XFVA 1Y0VA 1SIRA 2XS1A 3LGQA 3TZ2A 1RJ1A 4MPEA 3Q22A 3D1IA 4JIZA 5GJWE 2VIGA 4L38A 4AI6A 2PNRA 3MMOA 4G97A 4X28A 3Q0AA 4L3YA 4KS9A 2JIFA 2CJ7A 3B96A 3X29A 3VADA 3S7WA 4Q5BA 4Q17A 3BNFA 4KTOA 1FS7A 4JIOA 2A1TA 3BNJA 4L3XA 4N5FA 2FP1A 2ZO5A 2FP2A 2R03A 3AFEA 3CRKA 2BU7A 4H85A 4QICA 4WJYA 3TORA 4P79A 3GNCA 3MDDA 3MKHA 2BU2A 1FS8A 3FCJA 2JBTA 4H7QA 3GM6A 1EGEA 5GJVE 1Y8NA 4RM7A 2F6LA 5K3IA 4MPCA 2ZDYA 1S26A 2YYIA 2YYMA 3MXLA 3C2PA 2E81A 2BU8A 2CJ6A 2ZDXA 2AZEA 2RDZA 2Q8FA 4Q1OA 3EONA 1X8ZA 1Y8PA 1WS9A 4V26A 2RFQA 3D9GA 2BU6A 5B5VA 1SK6A 2OR0A 2YYGA 1SIQA 3CRLA 3D9EA 3L1TA 2OJQA 3P4TA 4Q5CA 4F0XA 3C3LA 3SCEA 1IS2A 3CE2A 4G5EA 2JBSA 3BNGA 2D29A 1RP3A 2R05A 3TZ0A 2PG0A 2IX5A 3UBRA 4FF2A 2CX9A 4FZ4A 4Q0TA 3TZ4A 3OWAA 1UDYA 2LFWA 3D9DA 1PK0A 4L3ZA 4AKIA 2BU5A 2GBBA 4O5MA 2XQRB 1RX0A 2BTZA 2CJ8A 3PFDA 4IV6A 1FS9A 2EBFX 4E02A 4HKRA 2C0UA 2YGWA 1OAHA 3TTBA 3Q23A 5J6AA 1SC5A 4ZYJA 1LVCA 1GKZA 2REHA 4MPNA 4KSFA 5M4MA 3AFFA 4FF3A 3D6BA 1JQIA 2Q8HA 2WBIA 1XFXA 1EGCA 2Q8IA 2RF7A 4OO2A 5B6BA 4LQQB 3Q24A
chains in the Genus database with same CATH topology
3C3LA 3VKGA 4KS9A 3VKHA 2EBHX 3CE2A 3X29A 3C46A 2EC5A 1K90A 1RP3A 2AO2A 4FF2A 4FZ4A 1XFYA 4KSAA 2FP1A 4HKSA 2FP2A 4AKGA 2LFWA 1PK0A 1XFUA 4QICA 3Q24A 2GBBA 4P79A 4AKIA 3Q0AA 2EBFX 3KMLA 4HKRA 1K8TA 5GJVE 2PO4A 3N0RA 4FF4A 2YGWA 2F6LA 2QR4A 4AKHA 1S26A 1XFWA 3Q23A 3C2PA 1SC5A 4FF1A 1LVCA 2AZEA 1K93A 4KSFA 1XFVA 1Y0VA 4FF3A 4F0XA 3Q22A 2VF1A 5GJWE 1XFXA 4AI6A 1SK6A 4G97A 1XFZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GJV E;  3X29 A;  5GJW E;  4P79 A; 
#chains in the Genus database with same CATH topology
 2CJ4 A;  4MP2 A;  3D9F A;  4IRN A;  3VKH A;  2EBH X;  4HR3 A;  4DZY A;  1K90 A;  2R0M A;  2Z1Q A;  5BRK A;  2AO2 A;  2UXW A;  2ZAF A;  4L1F A;  5BRM A;  5M4N A;  1XFY A;  3R7K A;  2C12 A;  2CJ5 A;  1XFU A;  1XG2 B;  4X28 C;  3RKH A;  1X91 A;  2JBR A;  4U83 A;  1R3B A;  2YYJ A;  4JEK A;  3TZ5 A;  1BUC A;  3SWO A;  4Q4U A;  3KML A;  2YYL A;  1Y8O A;  2YYK A;  2VR0 A;  1JM6 A;  4H81 A;  4XVX A;  1XFW A;  2IX6 A;  4DOY A;  1T9G A;  1X90 A;  4FF1 A;  1PI1 A;  4P13 A;  3LG1 A;  5K3G A;  1K93 A;  4AKG A;  2J7A A;  3SXQ A;  1QDB A;  2ZKJ A;  5B5W A;  2R02 A;  3NF4 A;  3F29 A;  5J71 A;  2VF1 A;  3MDE A;  3SF6 A;  3OWM A;  2E0A A;  2HJN A;  4MP7 A;  1GKX A;  4ZXV A;  3HWC A;  1XFZ A;  4KCF A;  5M4K A;  1UKW A;  3GQT A;  1R2J A;  1W07 A;  4E00 A;  3VKG A;  3M9V A;  3C46 A;  2XS8 A;  3UU9 A;  2EC5 A;  4J1V A;  2R0N A;  3X0X A;  3X0Y A;  3BNH A;  3FO3 A;  3OIB A;  2OEV A;  4HKS A;  4KSA A;  2FON A;  3EOM A;  1RJ4 A;  4NXL A;  4LQS B;  2DDH A;  5K3J A;  1GJV A;  3MPJ A;  1GU6 A;  4M9A A;  4FF4 A;  1K8T A;  4V25 A;  2PO4 A;  3N0R A;  2Q8G A;  5M4P A;  1U8V A;  2QR4 A;  3MPI A;  1IVH A;  4E01 A;  2EBA A;  2E80 A;  4AKH A;  2OT4 A;  2DVL A;  3D2R A;  4W9U A;  1EGD A;  3II9 A;  2OEX A;  5K3H A;  1XFV A;  1Y0V A;  1SIR A;  2XS1 A;  3LGQ A;  3TZ2 A;  1RJ1 A;  4MPE A;  3Q22 A;  3D1I A;  4JIZ A;  5GJW E;  2VIG A;  4L38 A;  4AI6 A;  2PNR A;  3MMO A;  4G97 A;  4X28 A;  3Q0A A;  4L3Y A;  4KS9 A;  2JIF A;  2CJ7 A;  3B96 A;  3X29 A;  3VAD A;  3S7W A;  4Q5B A;  4Q17 A;  3BNF A;  4KTO A;  1FS7 A;  4JIO A;  2A1T A;  3BNJ A;  4L3X A;  4N5F A;  2FP1 A;  2ZO5 A;  2FP2 A;  2R03 A;  3AFE A;  3CRK A;  2BU7 A;  4H85 A;  4QIC A;  4WJY A;  3TOR A;  4P79 A;  3GNC A;  3MDD A;  3MKH A;  2BU2 A;  1FS8 A;  3FCJ A;  2JBT A;  4H7Q A;  3GM6 A;  1EGE A;  5GJV E;  1Y8N A;  4RM7 A;  2F6L A;  5K3I A;  4MPC A;  2ZDY A;  1S26 A;  2YYI A;  2YYM A;  3MXL A;  3C2P A;  2E81 A;  2BU8 A;  2CJ6 A;  2ZDX A;  2AZE A;  2RDZ A;  2Q8F A;  4Q1O A;  3EON A;  1X8Z A;  1Y8P A;  1WS9 A;  4V26 A;  2RFQ A;  3D9G A;  2BU6 A;  5B5V A;  1SK6 A;  2OR0 A;  2YYG A;  1SIQ A;  3CRL A;  3D9E A;  3L1T A;  2OJQ A;  3P4T A;  4Q5C A;  4F0X A;  3C3L A;  3SCE A;  1IS2 A;  3CE2 A;  4G5E A;  2JBS A;  3BNG A;  2D29 A;  1RP3 A;  2R05 A;  3TZ0 A;  2PG0 A;  2IX5 A;  3UBR A;  4FF2 A;  2CX9 A;  4FZ4 A;  4Q0T A;  3TZ4 A;  3OWA A;  1UDY A;  2LFW A;  3D9D A;  1PK0 A;  4L3Z A;  4AKI A;  2BU5 A;  2GBB A;  4O5M A;  2XQR B;  1RX0 A;  2BTZ A;  2CJ8 A;  3PFD A;  4IV6 A;  1FS9 A;  2EBF X;  4E02 A;  4HKR A;  2C0U A;  2YGW A;  1OAH A;  3TTB A;  3Q23 A;  5J6A A;  1SC5 A;  4ZYJ A;  1LVC A;  1GKZ A;  2REH A;  4MPN A;  4KSF A;  5M4M A;  3AFF A;  4FF3 A;  3D6B A;  1JQI A;  2Q8H A;  2WBI A;  1XFX A;  1EGC A;  2Q8I A;  2RF7 A;  4OO2 A;  5B6B A;  4LQQ B;  3Q24 A; 
#chains in the Genus database with same CATH homology
 3C3L A;  3VKG A;  4KS9 A;  3VKH A;  2EBH X;  3CE2 A;  3X29 A;  3C46 A;  2EC5 A;  1K90 A;  1RP3 A;  2AO2 A;  4FF2 A;  4FZ4 A;  1XFY A;  4KSA A;  2FP1 A;  4HKS A;  2FP2 A;  4AKG A;  2LFW A;  1PK0 A;  1XFU A;  4QIC A;  3Q24 A;  2GBB A;  4P79 A;  4AKI A;  3Q0A A;  2EBF X;  3KML A;  4HKR A;  1K8T A;  5GJV E;  2PO4 A;  3N0R A;  4FF4 A;  2YGW A;  2F6L A;  2QR4 A;  4AKH A;  1S26 A;  1XFW A;  3Q23 A;  3C2P A;  1SC5 A;  4FF1 A;  1LVC A;  2AZE A;  1K93 A;  4KSF A;  1XFV A;  1Y0V A;  4FF3 A;  4F0X A;  3Q22 A;  2VF1 A;  5GJW E;  1XFX A;  4AI6 A;  1SK6 A;  4G97 A;  1XFZ A; 
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similar chains in the Genus database (?% sequence similarity)
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