1R3B | Genus

Total Genus 39

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	39
sequence length	202
structure length	202
Chain Sequence	MGSSHHHHHHSSGLVPRGSATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTESTCSVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLGSKDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__780348116231125__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__780348116231125__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1R3B/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__780348116231125__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"780348116231125","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1R3B/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__780348116231125__ ready

script 1 started

platformSpeed = 8

Viewer cachePut cache://localLOAD_/file/5cfbeb637649fdb232602b6d/pdb.gz

Viewer cachePut https://genus.fuw.edu.pl/file/5cfbeb637649fdb232602b6d/pdb.gz

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Cell cycle
source organism	Xenopus laevis
publication title	NMR solution structure of Mob1, a mitotic exit network protein and its interaction with an NDR kinase peptide pubmed doi rcsb
molecule keywords	MOB1
total genus	39
structure length	202
sequence length	202
ec nomenclature
pdb deposition date	2003-10-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03637	Mob1_phocein	Mob1/phocein family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.140.30	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	MOB kinase activator	1r3bA01

1PI1A 4J1VA 5BRKA 5BRMA 1R3BA 2HJNA 4LQQB 5B5VA 5B6BA 5B5WA 4LQSB 4JIZA
chains in the Genus database with same CATH superfamily

2BU8A 3R7KA 2EBFX 2YYKA 3EOMA 1EGCA 3TZ0A 2LFWA 4NXLA 1GKZA 2BTZA 3GNCA 4JIOA 2EBHX 5J71A 2F6LA 3BNGA 3Q0AA 2XQRB 3D9FA 4IRNA 4M9AA 4MP7A 3Q22A 1IS2A 1XFUA 2R02A 2AO2A 3AFEA 5BRMA 3OWAA 2BU6A 1EGEA 4L3XA 2EBAA 4QICA 2WBIA 4FF4A 2GBBA 3D1IA 3X0YA 3D2RA 3MMOA 4IV6A 3CE2A 1Y8PA 3SF6A 2RFQA 4FF3A 3LG1A 3TORA 3MPIA 2E80A 4DOYA 4Q17A 4KTOA 2BU5A 3MDDA 3C46A 1GJVA 3MPJA 4MPCA 4N5FA 3BNJA 2D29A 3FCJA 4U83A 3M9VA 1XG2B 2J7AA 1RJ1A 1X8ZA 2RDZA 4H81A 5GJWE 2CJ8A 2YYIA 1UDYA 2OJQA 3MDEA 5B5WA 3X29A 2ZAFA 3UU9A 1K90A 3D9DA 2HJNA 5K3GA 3UBRA 4KS9A 2PO4A 3Q23A 3F29A 1SK6A 2ZO5A 3MKHA 2R0NA 4J1VA 1FS9A 3D6BA 2OT4A 1T9GA 2Q8GA 2XS8A 4Q5BA 4Q4UA 1X91A 2FP1A 1SIQA 2AZEA 4H85A 4MPNA 1Y8NA 2UXWA 3PFDA 2JBRA 2IX5A 4FZ4A 4KSAA 4W9UA 4XVXA 1GU6A 1BUCA 2OEVA 3C3LA 3X0XA 3CRKA 5B6BA 1Y8OA 2JBSA 1XFVA 2FONA 2JBTA 2VIGA 3MXLA 4OO2A 3HWCA 1K8TA 4Q1OA 3TZ4A 4AKHA 1RJ4A 4H7QA 4L3YA 5GJVE 2BU7A 1RX0A 2CJ6A 1XFXA 4E01A 2OEXA 3FO3A 4KCFA 1JQIA 1W07A 5M4PA 4FF1A 3VKHA 2CJ5A 3GQTA 4G97A 2XS1A 4MPEA 4P79A 4Q5CA 1OAHA 2E0AA 3D9GA 3S7WA 4V26A 2YYLA 2ZKJA 2R03A 4FF2A 4AKIA 1R3BA 1XFYA 2VR0A 3NF4A 4HKSA 3VADA 2Q8IA 2CX9A 4LQSB 3SXQA 3P4TA 1X90A 2ZDXA 2YYJA 3L1TA 3SCEA 3Q24A 2EC5A 5K3HA 3D9EA 2Q8FA 3BNHA 4ZXVA 2DDHA 2REHA 2ZDYA 2FP2A 4RM7A 3SWOA 4AKGA 2IX6A 5M4KA 1S26A 2RF7A 2YYGA 2C12A 2QR4A 1QDBA 2PNRA 3GM6A 3N0RA 4KSFA 5K3IA 1K93A 2YYMA 5K3JA 2PG0A 4E00A 4G5EA 4L3ZA 1LVCA 5BRKA 1IVHA 3LGQA 5J6AA 5M4MA 3BNFA 1SC5A 1XFZA 4V25A 3RKHA 2DVLA 3II9A 3C2PA 3VKGA 1JM6A 3OIBA 1GKXA 2CJ4A 4JIZA 1PK0A 1PI1A 1U8VA 2E81A 4JEKA 1UKWA 1XFWA 4X28A 3KMLA 2JIFA 3TZ2A 4O5MA 4L38A 1SIRA 4L1FA 4AI6A 3TZ5A 2OR0A 4HR3A 4ZYJA 4Q0TA 3B96A 1Y0VA 4DZYA 4X28C 1FS8A 2A1TA 2Z1QA 2VF1A 3EONA 2YGWA 3TTBA 4F0XA 1R2JA 4WJYA 4LQQB 3OWMA 2CJ7A 3CRLA 5M4NA 4HKRA 4MP2A 2BU2A 1RP3A 4P13A 2Q8HA 2C0UA 4E02A 2R0MA 3AFFA 1WS9A 1EGDA 1FS7A 5B5VA 2R05A
chains in the Genus database with same CATH topology

1PI1A 4J1VA 5BRKA 5BRMA 1R3BA 2HJNA 4LQQB 5B5VA 5B6BA 5B5WA 4LQSB 4JIZA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1PI1 A;  4J1V A;  5BRK A;  5BRM A;  1R3B A;  2HJN A;  4LQQ B;  5B5V A;  5B6B A;  5B5W A;  4LQS B;  4JIZ A; 
#chains in the Genus database with same CATH topology
 2BU8 A;  3R7K A;  2EBF X;  2YYK A;  3EOM A;  1EGC A;  3TZ0 A;  2LFW A;  4NXL A;  1GKZ A;  2BTZ A;  3GNC A;  4JIO A;  2EBH X;  5J71 A;  2F6L A;  3BNG A;  3Q0A A;  2XQR B;  3D9F A;  4IRN A;  4M9A A;  4MP7 A;  3Q22 A;  1IS2 A;  1XFU A;  2R02 A;  2AO2 A;  3AFE A;  5BRM A;  3OWA A;  2BU6 A;  1EGE A;  4L3X A;  2EBA A;  4QIC A;  2WBI A;  4FF4 A;  2GBB A;  3D1I A;  3X0Y A;  3D2R A;  3MMO A;  4IV6 A;  3CE2 A;  1Y8P A;  3SF6 A;  2RFQ A;  4FF3 A;  3LG1 A;  3TOR A;  3MPI A;  2E80 A;  4DOY A;  4Q17 A;  4KTO A;  2BU5 A;  3MDD A;  3C46 A;  1GJV A;  3MPJ A;  4MPC A;  4N5F A;  3BNJ A;  2D29 A;  3FCJ A;  4U83 A;  3M9V A;  1XG2 B;  2J7A A;  1RJ1 A;  1X8Z A;  2RDZ A;  4H81 A;  5GJW E;  2CJ8 A;  2YYI A;  1UDY A;  2OJQ A;  3MDE A;  5B5W A;  3X29 A;  2ZAF A;  3UU9 A;  1K90 A;  3D9D A;  2HJN A;  5K3G A;  3UBR A;  4KS9 A;  2PO4 A;  3Q23 A;  3F29 A;  1SK6 A;  2ZO5 A;  3MKH A;  2R0N A;  4J1V A;  1FS9 A;  3D6B A;  2OT4 A;  1T9G A;  2Q8G A;  2XS8 A;  4Q5B A;  4Q4U A;  1X91 A;  2FP1 A;  1SIQ A;  2AZE A;  4H85 A;  4MPN A;  1Y8N A;  2UXW A;  3PFD A;  2JBR A;  2IX5 A;  4FZ4 A;  4KSA A;  4W9U A;  4XVX A;  1GU6 A;  1BUC A;  2OEV A;  3C3L A;  3X0X A;  3CRK A;  5B6B A;  1Y8O A;  2JBS A;  1XFV A;  2FON A;  2JBT A;  2VIG A;  3MXL A;  4OO2 A;  3HWC A;  1K8T A;  4Q1O A;  3TZ4 A;  4AKH A;  1RJ4 A;  4H7Q A;  4L3Y A;  5GJV E;  2BU7 A;  1RX0 A;  2CJ6 A;  1XFX A;  4E01 A;  2OEX A;  3FO3 A;  4KCF A;  1JQI A;  1W07 A;  5M4P A;  4FF1 A;  3VKH A;  2CJ5 A;  3GQT A;  4G97 A;  2XS1 A;  4MPE A;  4P79 A;  4Q5C A;  1OAH A;  2E0A A;  3D9G A;  3S7W A;  4V26 A;  2YYL A;  2ZKJ A;  2R03 A;  4FF2 A;  4AKI A;  1R3B A;  1XFY A;  2VR0 A;  3NF4 A;  4HKS A;  3VAD A;  2Q8I A;  2CX9 A;  4LQS B;  3SXQ A;  3P4T A;  1X90 A;  2ZDX A;  2YYJ A;  3L1T A;  3SCE A;  3Q24 A;  2EC5 A;  5K3H A;  3D9E A;  2Q8F A;  3BNH A;  4ZXV A;  2DDH A;  2REH A;  2ZDY A;  2FP2 A;  4RM7 A;  3SWO A;  4AKG A;  2IX6 A;  5M4K A;  1S26 A;  2RF7 A;  2YYG A;  2C12 A;  2QR4 A;  1QDB A;  2PNR A;  3GM6 A;  3N0R A;  4KSF A;  5K3I A;  1K93 A;  2YYM A;  5K3J A;  2PG0 A;  4E00 A;  4G5E A;  4L3Z A;  1LVC A;  5BRK A;  1IVH A;  3LGQ A;  5J6A A;  5M4M A;  3BNF A;  1SC5 A;  1XFZ A;  4V25 A;  3RKH A;  2DVL A;  3II9 A;  3C2P A;  3VKG A;  1JM6 A;  3OIB A;  1GKX A;  2CJ4 A;  4JIZ A;  1PK0 A;  1PI1 A;  1U8V A;  2E81 A;  4JEK A;  1UKW A;  1XFW A;  4X28 A;  3KML A;  2JIF A;  3TZ2 A;  4O5M A;  4L38 A;  1SIR A;  4L1F A;  4AI6 A;  3TZ5 A;  2OR0 A;  4HR3 A;  4ZYJ A;  4Q0T A;  3B96 A;  1Y0V A;  4DZY A;  4X28 C;  1FS8 A;  2A1T A;  2Z1Q A;  2VF1 A;  3EON A;  2YGW A;  3TTB A;  4F0X A;  1R2J A;  4WJY A;  4LQQ B;  3OWM A;  2CJ7 A;  3CRL A;  5M4N A;  4HKR A;  4MP2 A;  2BU2 A;  1RP3 A;  4P13 A;  2Q8H A;  2C0U A;  4E02 A;  2R0M A;  3AFF A;  1WS9 A;  1EGD A;  1FS7 A;  5B5V A;  2R05 A; 
#chains in the Genus database with same CATH homology
 1PI1 A;  4J1V A;  5BRK A;  5BRM A;  1R3B A;  2HJN A;  4LQQ B;  5B5V A;  5B6B A;  5B5W A;  4LQS B;  4JIZ A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1R3BA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations