The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
145
|
sequence length |
507
|
structure length |
485
|
Chain Sequence |
RIDVLKGEKALKASGLVPEHADAFKKIARELNTYILFRPVNKLATNLIKSGVATKGLNVHGKSSDWGPVAGYIPFDQDLSKKHGQQLAVEKGNLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIILKGKKEIDNGKKYYLLESNNQVYEFRISDENNEVQYKTKEGKITVLGEKFNWRNIEVMAKNVEGVLKPLTADYDLFALAPSLTEIKKQIPQKEWDKVVNTPNSLEKQKGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAVKYTGYTGGDVVNHGTEQDNEEFPEKDNEIFIINPEGEFILTKNWEMTGRFIEKNITGKDYLYYFNRSYNKIAPGNKAYIEWTDPITKAKINTIPTSAEFIKNLSSIRRSSSVKKIAGYLSDYYNSANHIFSQEKKRKISIFRGIQAYNEIENVLKSKQIAPEYKNYFQYLKERITNQVQLLLTHQKFKLLYKQLNFTENETDNFEVFQKIID
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of anthrax edema factor-calmodulin-adenosine-5'-(alpha,beta-methylene)-triphosphate complex reveals an alternative mode of ATP binding to the catalytic site
pubmed doi rcsb |
| molecule tags |
Toxin,lyase/metal binding protein
|
| source organism |
Bacillus anthracis
|
| molecule keywords |
Calmodulin-sensitive adenylate cyclase
|
| total genus |
145
|
| structure length |
485
|
| sequence length |
507
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
4.6.1.1: Adenylate cyclase. |
| pdb deposition date | 2004-01-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03497 | Anthrax_toxA | Anthrax toxin LF subunit |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | ||
| Alpha Beta | Alpha-Beta Complex | Adenylylcyclase toxin fold | Anthrax toxin, edema factor, central domain |
#chains in the Genus database with same CATH superfamily 1K90 A; 1XFY A; 1K8T A; 1XFU A; 1XFV A; 1ZOT A; 2COL A; 1SK6 A; 1XFW A; 1YRT A; 1XFZ A; 1XFX A; 1Y0V A; 1YRU A; 1PK0 A; 1S26 A; 1K93 A; 1LVC A; #chains in the Genus database with same CATH topology 1T9G A; 1XFY A; 4H7Q A; 1EGD A; 2OT4 A; 2DVL A; 4MPC A; 1IS2 A; 4FZ4 A; 5J6A A; 3C2P A; 2BTZ A; 1RP3 A; 4QIC A; 2R0N A; 1S26 A; 4IRN A; 1K93 A; 1R2J A; 2CJ7 A; 2CJ5 A; 2ZKJ A; 1GKZ A; 2VR0 A; 3D9F A; 3LG1 A; 1XG2 B; 2ZO5 A; 2R03 A; 3MDD A; 4Q0T A; 3TTB A; 2AO2 A; 2PG0 A; 4AKG A; 1YRT A; 4FF4 A; 2YYI A; 2PO4 A; 2EC5 A; 2XS1 A; 5K3H A; 2C0U A; 2ZDY A; 1XFU A; 3Q23 A; 3LGQ A; 3C46 A; 1FS9 A; 1RJ1 A; 2AZE A; 3EON A; 4MPE A; 4Q5C A; 4V25 A; 1SIQ A; 1Y8O A; 2GBB A; 2VF1 A; 3Q22 A; 4AKH A; 3MPJ A; 2Q8F A; 2R02 A; 3UU9 A; 3Q24 A; 4P13 A; 4RM7 A; 4G5E A; 1GJV A; 1XFV A; 3D9G A; 2RDZ A; 4HKS A; 4KCF A; 4L3X A; 2QR4 A; 4DOY A; 4JEK A; 5BRK A; 4HR3 A; 4LQQ B; 2J7A A; 1UDY A; 1R3B A; 2OEV A; 2Z1Q A; 4L38 A; 4MP7 A; 2CJ8 A; 2FON A; 4W9U A; 5K3I A; 2YYJ A; 1XFW A; 3FO3 A; 3TZ0 A; 2BU8 A; 4KSF A; 2BU7 A; 2DDH A; 2YYG A; 1LVC A; 2ZAF A; 3UBR A; 2F6L A; 2UXW A; 1GU6 A; 4KS9 A; 3S7W A; 2YYK A; 2YYM A; 3SF6 A; 3R7K A; 4ZYJ A; 5M4M A; 1FS7 A; 2Q8H A; 3FCJ A; 5B5W A; 1YRU A; 3D1I A; 2OEX A; 3BNJ A; 3D6B A; 4KSA A; 4MP2 A; 4LQS B; 2RF7 A; 1X91 A; 2R05 A; 4JIZ A; 4Q4U A; 1QDB A; 1X8Z A; 5B6B A; 2D29 A; 4FF1 A; 1WS9 A; 4X28 A; 1EGC A; 4JIO A; 3BNH A; 2JBR A; 4U83 A; 3Q0A A; 1PK0 A; 1U8V A; 1Y0V A; 4H81 A; 3OWM A; 3MDE A; 4E00 A; 2EBF X; 1RX0 A; 1BUC A; 1SK6 A; 4L3Z A; 1XFZ A; 3GM6 A; 5K3J A; 1Y8N A; 3CRL A; 5K3G A; 1JQI A; 4IV6 A; 2JBT A; 4Q1O A; 1JM6 A; 3II9 A; 2YGW A; 2R0M A; 4X28 C; 4HKR A; 4DZY A; 2XQR B; 2YYL A; 3NF4 A; 3VKH A; 2EBA A; 2IX6 A; 3SCE A; 2E0A A; 4AI6 A; 4N5F A; 4V26 A; 2RFQ A; 1PI1 A; 4H85 A; 3MKH A; 2E81 A; 3RKH A; 3M9V A; 1Y8P A; 3D9D A; 2IX5 A; 2FP2 A; 3B96 A; 3OIB A; 4KTO A; 3OWA A; 4L1F A; 4WJY A; 3MXL A; 4F0X A; 2CJ6 A; 3PFD A; 2E80 A; 3CRK A; 4FF2 A; 5BRM A; 2COL A; 3BNF A; 3GQT A; 4Q17 A; 4Q5B A; 3TOR A; 2WBI A; 1OAH A; 3TZ4 A; 3GNC A; 4E02 A; 2PNR A; 2ZDX A; 4L3Y A; 4XVX A; 1SC5 A; 3D2R A; 3MMO A; 2REH A; 1ZOT A; 3CE2 A; 4M9A A; 5M4K A; 1RJ4 A; 2HJN A; 3AFF A; 3TZ5 A; 1SIR A; 4O5M A; 1GKX A; 5GJV E; 3X0Y A; 2C12 A; 2BU2 A; 3AFE A; 4MPN A; 2EBH X; 3L1T A; 2Q8I A; 3VKG A; 3EOM A; 3MPI A; 4NXL A; 3P4T A; 1K90 A; 2JBS A; 3D9E A; 3N0R A; 4G97 A; 4OO2 A; 1K8T A; 3SXQ A; 2LFW A; 3F29 A; 2BU5 A; 2FP1 A; 3X0X A; 2Q8G A; 1XFX A; 5GJW E; 5J71 A; 5M4P A; 2BU6 A; 2CJ4 A; 3TZ2 A; 3SWO A; 2A1T A; 5B5V A; 2XS8 A; 3HWC A; 3C3L A; 2OR0 A; 3BNG A; 2VIG A; 4J1V A; 3VAD A; 1UKW A; 5M4N A; 1X90 A; 4AKI A; 1W07 A; 4E01 A; 2OJQ A; 3X29 A; 4FF3 A; 2JIF A; 1EGE A; 1FS8 A; 3KML A; 2CX9 A; 4P79 A; 4ZXV A; 1IVH A; #chains in the Genus database with same CATH homology 5GJV E; 1XFY A; 2YGW A; 1XFW A; 4FZ4 A; 4HKR A; 3C2P A; 2EBH X; 3VKG A; 1RP3 A; 4KSF A; 4QIC A; 1S26 A; 1K93 A; 1LVC A; 1K90 A; 4G97 A; 3N0R A; 2F6L A; 4AI6 A; 1K8T A; 4KS9 A; 2LFW A; 2AO2 A; 2FP1 A; 1YRT A; 4AKG A; 1XFX A; 5GJW E; 4FF4 A; 2PO4 A; 2EC5 A; 3X29 A; 1YRU A; 3VKH A; 2FP2 A; 4KSA A; 4AKI A; 4F0X A; 4FF1 A; 4FF2 A; 1XFU A; 3C3L A; 3Q23 A; 2COL A; 3C46 A; 2AZE A; 4AKH A; 2GBB A; 2VF1 A; 3Q22 A; 3Q0A A; 1PK0 A; 1Y0V A; 3Q24 A; 1SC5 A; 1XFV A; 2EBF X; 4HKS A; 1SK6 A; 1ZOT A; 2QR4 A; 1XFZ A; 3CE2 A; 4FF3 A; 3KML A; 4P79 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
