1X8ZA

Crystal structure of a pectin methylesterase inhibitor from arabidopsis thaliana
Total Genus 67

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
67
sequence length
151
structure length
151
Chain Sequence
MDSSEMSTICDKTLNPSFCLKFLNTKFASPNLQALAKTTLDSTQARATQTLKKLQSIIDGGVDPRSKLAYRSCVDEYESAIGNLEEAFEHLASGDGMGMNMKVSAALDGADTCLDDVKRLRSVDSSVVNNSKTIKNLCGIALVISNMLPRN
2040608010012014014012010080604020
0102030405060Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (1-9)EMPTYO1 (8-17)TIV1 (11-14)AH2 (14-24)AH3 (30-58)AH4 (62-91)AH6 (123-145)TVIII1 (118-121)O2 (71-111)AH5 (94-117)Updating...
connected with : NaN
molecule tags Protein binding
source organism Arabidopsis thaliana
publication title Structural insights into the target specificity of plant invertase and pectin methylesterase inhibitory proteins
pubmed doi rcsb
molecule keywords invertase/pectin methylesterase inhibitor family protein
total genus 67
structure length 151
sequence length 151
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2004-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04043 PMEI Plant invertase/pectin methylesterase inhibitor
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.40 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Invertase/pectin methylesterase inhibitor family protein 1x8zA00
2CJ4A 1XG2B 1RJ4A 1RJ1A 2CJ8A 1X91A 1X8ZA 2CJ5A 2CJ7A 2XQRB 1X90A 2CJ6A
chains in the Genus database with same CATH superfamily
2OR0A 2XS8A 4O5MA 3CRLA 2R0NA 2ZDXA 2AO2A 3SCEA 3C46A 2IX5A 1Y8PA 5M4PA 3LG1A 2CJ6A 3HWCA 4MP7A 2JBSA 2RFQA 1XG2B 3NF4A 2C12A 2J7AA 3OWAA 4Q4UA 2OEXA 2ZDYA 1OAHA 1BUCA 4MPEA 1PK0A 2UXWA 4HKRA 3RKHA 3TZ4A 2BU7A 4KCFA 3C3LA 3PFDA 3X0YA 3D9GA 4W9UA 5BRKA 3X29A 4FF2A 4J1VA 4FF3A 2ZAFA 3MDDA 2YYKA 2E80A 4ZXVA 2VIGA 1XFVA 1GKZA 3UU9A 2YYIA 2CJ8A 1FS7A 3LGQA 2HJNA 2OEVA 2IX6A 2Z1QA 5K3IA 3D9DA 4V26A 1IS2A 1XFWA 1RJ1A 2E0AA 3MMOA 3BNJA 2BU8A 2EBAA 2YYLA 4JIOA 4IRNA 4NXLA 4OO2A 2Q8IA 1SIRA 2CJ4A 3L1TA 1FS8A 1T9GA 1XFYA 3D6BA 2RDZA 3B96A 4L38A 3N0RA 2R05A 3CE2A 4KTOA 3TZ0A 2XQRB 3TTBA 4DZYA 3Q22A 4G5EA 5M4NA 2Q8HA 3D1IA 1GU6A 3R7KA 4ZYJA 1RJ4A 5B6BA 3OIBA 4M9AA 4FF1A 3KMLA 2OJQA 3VKHA 1IVHA 3MXLA 3MDEA 4KSAA 2CJ7A 4N5FA 2VF1A 5K3GA 2DVLA 3D2RA 4XVXA 4F0XA 3VADA 2RF7A 1X91A 2Q8GA 2BU6A 1XFUA 2R03A 1GJVA 1PI1A 3AFFA 1K8TA 4Q0TA 2F6LA 4QICA 2C0UA 4U83A 2EBHX 2JIFA 3TZ2A 5K3HA 4MP2A 4FF4A 3MPIA 2DDHA 3BNFA 5B5WA 3GM6A 5GJVE 5M4MA 3GNCA 2R0MA 3S7WA 4E00A 1K90A 1K93A 2PO4A 4LQQB 5GJWE 1EGCA 2R02A 4Q5BA 5J71A 4L3YA 3BNGA 1UKWA 2ZO5A 4MPNA 4E01A 4G97A 1X8ZA 4H7QA 4KSFA 1RP3A 2FP2A 1X90A 2EBFX 3MPJA 5J6AA 2REHA 1XFXA 4L3XA 4JIZA 4Q1OA 2YYGA 2BU5A 2OT4A 3M9VA 1EGEA 3X0XA 2FONA 4L3ZA 5M4KA 3BNHA 2E81A 2JBRA 2BU2A 1SIQA 2D29A 3EONA 4Q5CA 4DOYA 2A1TA 2YYJA 2CJ5A 2XS1A 1RX0A 2PG0A 4X28C 5BRMA 1GKXA 4P13A 2Q8FA 1S26A 2LFWA 2FP1A 4MPCA 4E02A 2VR0A 3F29A 1WS9A 3SF6A 1Y8NA 1SC5A 1FS9A 2AZEA 2CX9A 3MKHA 4Q17A 3SXQA 2QR4A 3Q23A 3P4TA 3II9A 5B5VA 5K3JA 3D9EA 4IV6A 4KS9A 4L1FA 1XFZA 3TZ5A 2JBTA 2ZKJA 4H85A 4FZ4A 1W07A 2PNRA 4RM7A 3AFEA 4H81A 4HKSA 1JQIA 4V25A 4WJYA 3TORA 3UBRA 3C2PA 4AKGA 3VKGA 4X28A 1LVCA 1UDYA 3Q0AA 2YYMA 2BTZA 3D9FA 2EC5A 1JM6A 4P79A 3FCJA 1QDBA 3GQTA 3SWOA 1R3BA 1Y0VA 2YGWA 4AKHA 2WBIA 1R2JA 1SK6A 4HR3A 4AI6A 3EOMA 3FO3A 3Q24A 4JEKA 3CRKA 4AKIA 1EGDA 1U8VA 1Y8OA 3OWMA 2GBBA 4LQSB
chains in the Genus database with same CATH topology
2CJ4A 1XG2B 1RJ4A 1RJ1A 2CJ8A 1X91A 1X8ZA 2CJ5A 2CJ7A 2XQRB 1X90A 2CJ6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2CJ4 A;  1XG2 B;  1RJ4 A;  1RJ1 A;  2CJ8 A;  1X91 A;  1X8Z A;  2CJ5 A;  2CJ7 A;  2XQR B;  1X90 A;  2CJ6 A; 
#chains in the Genus database with same CATH topology
 2OR0 A;  2XS8 A;  4O5M A;  3CRL A;  2R0N A;  2ZDX A;  2AO2 A;  3SCE A;  3C46 A;  2IX5 A;  1Y8P A;  5M4P A;  3LG1 A;  2CJ6 A;  3HWC A;  4MP7 A;  2JBS A;  2RFQ A;  1XG2 B;  3NF4 A;  2C12 A;  2J7A A;  3OWA A;  4Q4U A;  2OEX A;  2ZDY A;  1OAH A;  1BUC A;  4MPE A;  1PK0 A;  2UXW A;  4HKR A;  3RKH A;  3TZ4 A;  2BU7 A;  4KCF A;  3C3L A;  3PFD A;  3X0Y A;  3D9G A;  4W9U A;  5BRK A;  3X29 A;  4FF2 A;  4J1V A;  4FF3 A;  2ZAF A;  3MDD A;  2YYK A;  2E80 A;  4ZXV A;  2VIG A;  1XFV A;  1GKZ A;  3UU9 A;  2YYI A;  2CJ8 A;  1FS7 A;  3LGQ A;  2HJN A;  2OEV A;  2IX6 A;  2Z1Q A;  5K3I A;  3D9D A;  4V26 A;  1IS2 A;  1XFW A;  1RJ1 A;  2E0A A;  3MMO A;  3BNJ A;  2BU8 A;  2EBA A;  2YYL A;  4JIO A;  4IRN A;  4NXL A;  4OO2 A;  2Q8I A;  1SIR A;  2CJ4 A;  3L1T A;  1FS8 A;  1T9G A;  1XFY A;  3D6B A;  2RDZ A;  3B96 A;  4L38 A;  3N0R A;  2R05 A;  3CE2 A;  4KTO A;  3TZ0 A;  2XQR B;  3TTB A;  4DZY A;  3Q22 A;  4G5E A;  5M4N A;  2Q8H A;  3D1I A;  1GU6 A;  3R7K A;  4ZYJ A;  1RJ4 A;  5B6B A;  3OIB A;  4M9A A;  4FF1 A;  3KML A;  2OJQ A;  3VKH A;  1IVH A;  3MXL A;  3MDE A;  4KSA A;  2CJ7 A;  4N5F A;  2VF1 A;  5K3G A;  2DVL A;  3D2R A;  4XVX A;  4F0X A;  3VAD A;  2RF7 A;  1X91 A;  2Q8G A;  2BU6 A;  1XFU A;  2R03 A;  1GJV A;  1PI1 A;  3AFF A;  1K8T A;  4Q0T A;  2F6L A;  4QIC A;  2C0U A;  4U83 A;  2EBH X;  2JIF A;  3TZ2 A;  5K3H A;  4MP2 A;  4FF4 A;  3MPI A;  2DDH A;  3BNF A;  5B5W A;  3GM6 A;  5GJV E;  5M4M A;  3GNC A;  2R0M A;  3S7W A;  4E00 A;  1K90 A;  1K93 A;  2PO4 A;  4LQQ B;  5GJW E;  1EGC A;  2R02 A;  4Q5B A;  5J71 A;  4L3Y A;  3BNG A;  1UKW A;  2ZO5 A;  4MPN A;  4E01 A;  4G97 A;  1X8Z A;  4H7Q A;  4KSF A;  1RP3 A;  2FP2 A;  1X90 A;  2EBF X;  3MPJ A;  5J6A A;  2REH A;  1XFX A;  4L3X A;  4JIZ A;  4Q1O A;  2YYG A;  2BU5 A;  2OT4 A;  3M9V A;  1EGE A;  3X0X A;  2FON A;  4L3Z A;  5M4K A;  3BNH A;  2E81 A;  2JBR A;  2BU2 A;  1SIQ A;  2D29 A;  3EON A;  4Q5C A;  4DOY A;  2A1T A;  2YYJ A;  2CJ5 A;  2XS1 A;  1RX0 A;  2PG0 A;  4X28 C;  5BRM A;  1GKX A;  4P13 A;  2Q8F A;  1S26 A;  2LFW A;  2FP1 A;  4MPC A;  4E02 A;  2VR0 A;  3F29 A;  1WS9 A;  3SF6 A;  1Y8N A;  1SC5 A;  1FS9 A;  2AZE A;  2CX9 A;  3MKH A;  4Q17 A;  3SXQ A;  2QR4 A;  3Q23 A;  3P4T A;  3II9 A;  5B5V A;  5K3J A;  3D9E A;  4IV6 A;  4KS9 A;  4L1F A;  1XFZ A;  3TZ5 A;  2JBT A;  2ZKJ A;  4H85 A;  4FZ4 A;  1W07 A;  2PNR A;  4RM7 A;  3AFE A;  4H81 A;  4HKS A;  1JQI A;  4V25 A;  4WJY A;  3TOR A;  3UBR A;  3C2P A;  4AKG A;  3VKG A;  4X28 A;  1LVC A;  1UDY A;  3Q0A A;  2YYM A;  2BTZ A;  3D9F A;  2EC5 A;  1JM6 A;  4P79 A;  3FCJ A;  1QDB A;  3GQT A;  3SWO A;  1R3B A;  1Y0V A;  2YGW A;  4AKH A;  2WBI A;  1R2J A;  1SK6 A;  4HR3 A;  4AI6 A;  3EOM A;  3FO3 A;  3Q24 A;  4JEK A;  3CRK A;  4AKI A;  1EGD A;  1U8V A;  1Y8O A;  3OWM A;  2GBB A;  4LQS B; 
#chains in the Genus database with same CATH homology
 2CJ4 A;  1XG2 B;  1RJ4 A;  1RJ1 A;  2CJ8 A;  1X91 A;  1X8Z A;  2CJ5 A;  2CJ7 A;  2XQR B;  1X90 A;  2CJ6 A; 
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