1XG2 | Genus

Total Genus 66

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	66
sequence length	151
structure length	151
Chain Sequence	FENHLISEICPKTRNPSLCLQALESDPRSASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQATDPKLKGRYETCSENYADAIDSLGQAKQFLTSGDYNSLNIYASAAFDGAGTCEDSFEGPPNIPTQLHQADLKLEDLCDIVLVISNLLP

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__783143498716672__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__783143498716672__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1XG2/B/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__783143498716672__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"783143498716672","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1XG2/B/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__783143498716672__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Actinidia chinensis
publication title	Structural Basis for the Interaction between Pectin Methylesterase and a Specific Inhibitor Protein pubmed doi rcsb
molecule keywords	Pectinesterase 1
total genus	66
structure length	151
sequence length	151
ec nomenclature
pdb deposition date	2004-09-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF04043	PMEI	Plant invertase/pectin methylesterase inhibitor

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.140.40	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	Invertase/pectin methylesterase inhibitor family protein	1xg2B00

2CJ5A 2XQRB 2CJ7A 1RJ4A 2CJ4A 1X90A 1RJ1A 1X91A 1X8ZA 2CJ6A 1XG2B 2CJ8A
chains in the Genus database with same CATH superfamily

1XFVA 3X29A 5J71A 3MMOA 5K3JA 2XS1A 2YYIA 1SIRA 3II9A 4HKSA 1K90A 4MP2A 4QICA 4AKIA 1OAHA 2OT4A 2A1TA 2BTZA 3KMLA 4M9AA 1IS2A 2ZDYA 3HWCA 2CJ4A 4XVXA 4HKRA 4L1FA 2Q8HA 1XFZA 2EC5A 5M4KA 3CE2A 1JM6A 2BU5A 1LVCA 1S26A 2YYLA 3B96A 3TZ4A 1GKZA 4JIZA 3Q24A 2CJ5A 3S7WA 4RM7A 1FS8A 2ZKJA 1X90A 3UBRA 1X91A 2Q8GA 2Q8FA 3D9GA 1XFXA 3SCEA 3NF4A 4L3ZA 4Q5BA 2XQRB 3MKHA 4FF1A 4AI6A 2BU6A 2BU8A 4H85A 3M9VA 4JIOA 2ZDXA 3R7KA 4FF3A 2F6LA 4L3XA 2VIGA 3F29A 3RKHA 2E0AA 2JIFA 3SWOA 4MPEA 2OR0A 2R0MA 2Q8IA 3BNHA 2E80A 5K3GA 2J7AA 2CX9A 3BNGA 4L3YA 5B6BA 2DVLA 4X28A 4LQQB 4E00A 2UXWA 2RFQA 4E01A 5K3HA 3GQTA 1R3BA 1Y8PA 2OJQA 2AO2A 1Y8NA 3N0RA 5M4NA 3MPIA 2C0UA 3EOMA 4MP7A 3TZ0A 3X0XA 3AFEA 4JEKA 3FO3A 2GBBA 4KSFA 5BRMA 2R02A 2R05A 3PFDA 1Y8OA 2EBHX 1EGDA 2YYJA 3D9FA 4IRNA 1R2JA 4L38A 1K93A 4V25A 1RJ4A 1K8TA 1BUCA 2RF7A 3BNJA 2R0NA 1IVHA 2QR4A 1XFUA 3MPJA 4J1VA 4H7QA 5B5WA 5J6AA 1XFWA 1WS9A 2CJ6A 1XFYA 3GM6A 4P79A 2IX6A 4ZXVA 2JBTA 1PK0A 2Z1QA 1GJVA 2AZEA 2BU2A 2DDHA 3EONA 4ZYJA 4AKHA 4FF4A 4F0XA 2OEVA 2LFWA 4HR3A 4Q4UA 4Q0TA 3L1TA 2EBFX 1RJ1A 4KCFA 3SF6A 1QDBA 4MPNA 4DZYA 1U8VA 3P4TA 1T9GA 1RP3A 1SK6A 1EGEA 3MDEA 4Q17A 1SC5A 4W9UA 3D1IA 2XS8A 2FP2A 3OWMA 3BNFA 4H81A 1RX0A 2VR0A 2YYMA 3OWAA 2JBRA 4FF2A 3SXQA 2JBSA 4IV6A 5BRKA 3D6BA 2IX5A 2PO4A 1W07A 4AKGA 3D9DA 4MPCA 2YYKA 4LQSB 3TZ5A 2FP1A 2EBAA 3CRKA 2CJ8A 1UKWA 2PNRA 3GNCA 5K3IA 3Q23A 1UDYA 4U83A 1FS7A 2CJ7A 4P13A 3TZ2A 4V26A 4N5FA 2YGWA 5GJWE 1SIQA 2ZAFA 1FS9A 2VF1A 5M4PA 3AFFA 5M4MA 2ZO5A 1PI1A 3D2RA 3OIBA 3C46A 3LGQA 3MXLA 3FCJA 4KSAA 2YYGA 5B5VA 1GKXA 2E81A 2BU7A 3LG1A 3TORA 2R03A 4OO2A 3VKGA 1JQIA 3D9EA 3X0YA 4DOYA 3VADA 2C12A 3UU9A 3VKHA 3C2PA 4KS9A 4Q5CA 3Q22A 3C3LA 1X8ZA 2PG0A 4KTOA 4WJYA 1GU6A 4Q1OA 3Q0AA 4X28C 4NXLA 2HJNA 4G97A 5GJVE 3CRLA 3TTBA 2WBIA 2REHA 2FONA 1EGCA 4E02A 4FZ4A 2OEXA 4G5EA 2D29A 4O5MA 3MDDA 1Y0VA 1XG2B 2RDZA
chains in the Genus database with same CATH topology

2CJ5A 2XQRB 2CJ7A 1RJ4A 2CJ4A 1X90A 1RJ1A 1X91A 1X8ZA 2CJ6A 1XG2B 2CJ8A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2CJ5 A;  2XQR B;  2CJ7 A;  1RJ4 A;  2CJ4 A;  1X90 A;  1RJ1 A;  1X91 A;  1X8Z A;  2CJ6 A;  1XG2 B;  2CJ8 A; 
#chains in the Genus database with same CATH topology
 1XFV A;  3X29 A;  5J71 A;  3MMO A;  5K3J A;  2XS1 A;  2YYI A;  1SIR A;  3II9 A;  4HKS A;  1K90 A;  4MP2 A;  4QIC A;  4AKI A;  1OAH A;  2OT4 A;  2A1T A;  2BTZ A;  3KML A;  4M9A A;  1IS2 A;  2ZDY A;  3HWC A;  2CJ4 A;  4XVX A;  4HKR A;  4L1F A;  2Q8H A;  1XFZ A;  2EC5 A;  5M4K A;  3CE2 A;  1JM6 A;  2BU5 A;  1LVC A;  1S26 A;  2YYL A;  3B96 A;  3TZ4 A;  1GKZ A;  4JIZ A;  3Q24 A;  2CJ5 A;  3S7W A;  4RM7 A;  1FS8 A;  2ZKJ A;  1X90 A;  3UBR A;  1X91 A;  2Q8G A;  2Q8F A;  3D9G A;  1XFX A;  3SCE A;  3NF4 A;  4L3Z A;  4Q5B A;  2XQR B;  3MKH A;  4FF1 A;  4AI6 A;  2BU6 A;  2BU8 A;  4H85 A;  3M9V A;  4JIO A;  2ZDX A;  3R7K A;  4FF3 A;  2F6L A;  4L3X A;  2VIG A;  3F29 A;  3RKH A;  2E0A A;  2JIF A;  3SWO A;  4MPE A;  2OR0 A;  2R0M A;  2Q8I A;  3BNH A;  2E80 A;  5K3G A;  2J7A A;  2CX9 A;  3BNG A;  4L3Y A;  5B6B A;  2DVL A;  4X28 A;  4LQQ B;  4E00 A;  2UXW A;  2RFQ A;  4E01 A;  5K3H A;  3GQT A;  1R3B A;  1Y8P A;  2OJQ A;  2AO2 A;  1Y8N A;  3N0R A;  5M4N A;  3MPI A;  2C0U A;  3EOM A;  4MP7 A;  3TZ0 A;  3X0X A;  3AFE A;  4JEK A;  3FO3 A;  2GBB A;  4KSF A;  5BRM A;  2R02 A;  2R05 A;  3PFD A;  1Y8O A;  2EBH X;  1EGD A;  2YYJ A;  3D9F A;  4IRN A;  1R2J A;  4L38 A;  1K93 A;  4V25 A;  1RJ4 A;  1K8T A;  1BUC A;  2RF7 A;  3BNJ A;  2R0N A;  1IVH A;  2QR4 A;  1XFU A;  3MPJ A;  4J1V A;  4H7Q A;  5B5W A;  5J6A A;  1XFW A;  1WS9 A;  2CJ6 A;  1XFY A;  3GM6 A;  4P79 A;  2IX6 A;  4ZXV A;  2JBT A;  1PK0 A;  2Z1Q A;  1GJV A;  2AZE A;  2BU2 A;  2DDH A;  3EON A;  4ZYJ A;  4AKH A;  4FF4 A;  4F0X A;  2OEV A;  2LFW A;  4HR3 A;  4Q4U A;  4Q0T A;  3L1T A;  2EBF X;  1RJ1 A;  4KCF A;  3SF6 A;  1QDB A;  4MPN A;  4DZY A;  1U8V A;  3P4T A;  1T9G A;  1RP3 A;  1SK6 A;  1EGE A;  3MDE A;  4Q17 A;  1SC5 A;  4W9U A;  3D1I A;  2XS8 A;  2FP2 A;  3OWM A;  3BNF A;  4H81 A;  1RX0 A;  2VR0 A;  2YYM A;  3OWA A;  2JBR A;  4FF2 A;  3SXQ A;  2JBS A;  4IV6 A;  5BRK A;  3D6B A;  2IX5 A;  2PO4 A;  1W07 A;  4AKG A;  3D9D A;  4MPC A;  2YYK A;  4LQS B;  3TZ5 A;  2FP1 A;  2EBA A;  3CRK A;  2CJ8 A;  1UKW A;  2PNR A;  3GNC A;  5K3I A;  3Q23 A;  1UDY A;  4U83 A;  1FS7 A;  2CJ7 A;  4P13 A;  3TZ2 A;  4V26 A;  4N5F A;  2YGW A;  5GJW E;  1SIQ A;  2ZAF A;  1FS9 A;  2VF1 A;  5M4P A;  3AFF A;  5M4M A;  2ZO5 A;  1PI1 A;  3D2R A;  3OIB A;  3C46 A;  3LGQ A;  3MXL A;  3FCJ A;  4KSA A;  2YYG A;  5B5V A;  1GKX A;  2E81 A;  2BU7 A;  3LG1 A;  3TOR A;  2R03 A;  4OO2 A;  3VKG A;  1JQI A;  3D9E A;  3X0Y A;  4DOY A;  3VAD A;  2C12 A;  3UU9 A;  3VKH A;  3C2P A;  4KS9 A;  4Q5C A;  3Q22 A;  3C3L A;  1X8Z A;  2PG0 A;  4KTO A;  4WJY A;  1GU6 A;  4Q1O A;  3Q0A A;  4X28 C;  4NXL A;  2HJN A;  4G97 A;  5GJV E;  3CRL A;  3TTB A;  2WBI A;  2REH A;  2FON A;  1EGC A;  4E02 A;  4FZ4 A;  2OEX A;  4G5E A;  2D29 A;  4O5M A;  3MDD A;  1Y0V A;  1XG2 B;  2RDZ A; 
#chains in the Genus database with same CATH homology
 2CJ5 A;  2XQR B;  2CJ7 A;  1RJ4 A;  2CJ4 A;  1X90 A;  1RJ1 A;  1X91 A;  1X8Z A;  2CJ6 A;  1XG2 B;  2CJ8 A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1XG2B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations