The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
66
|
sequence length |
165
|
structure length |
165
|
Chain Sequence |
GTSQLAELVDAAAERLEVADPVAAFKWRAQLPIEDSGRVEQQLAKLGEDARSQHIDPDYVTRVFDDQIRATEAIEYSRFSDWKLNPASAPPEPPDLSASRSAIDSLNNRMLSQIWSHWSLLSAPSCAAQLDRAKRDIVRSRHLDSLYQRALTTATQSYCQALPPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions.
pubmed doi rcsb |
| molecule tags |
Isomerase
|
| source organism |
Mycobacterium tuberculosis
|
| molecule keywords |
Chorismate mutase
|
| total genus |
66
|
| structure length |
165
|
| sequence length |
165
|
| chains with identical sequence |
B, C
|
| ec nomenclature |
ec
5.4.99.5: Chorismate mutase. |
| pdb deposition date | 2005-08-12 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01817 | CM_2 | Chorismate mutase type II |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 |
#chains in the Genus database with same CATH superfamily 2GBB A; 2AO2 A; 2F6L A; 2FP2 A; 2FP1 A; #chains in the Genus database with same CATH topology 3F29 A; 3Q22 A; 2EBH X; 3OIB A; 2R02 A; 4N5F A; 3D9E A; 1R3B A; 3X0X A; 2ZAF A; 1FS8 A; 4AI6 A; 2R0N A; 4AKH A; 1EGE A; 1XG2 B; 3HWC A; 4X28 C; 4MP7 A; 1U8V A; 2YYM A; 1PK0 A; 3C2P A; 4FZ4 A; 4OO2 A; 2OEX A; 2EC5 A; 2XS8 A; 3CRK A; 1XFX A; 5B6B A; 3D9D A; 3NF4 A; 3P4T A; 4H85 A; 3Q23 A; 2PO4 A; 5GJV E; 4KSA A; 1GKX A; 2Q8G A; 1Y8P A; 3MPI A; 4W9U A; 1Y8N A; 2CJ6 A; 2BU5 A; 4QIC A; 3CE2 A; 2BU7 A; 4RM7 A; 4X28 A; 4AKI A; 4ZYJ A; 4WJY A; 3N0R A; 2D29 A; 4H81 A; 3SCE A; 4FF3 A; 1XFZ A; 4L1F A; 5K3G A; 2CJ5 A; 2PG0 A; 2YYJ A; 2OEV A; 4HKS A; 3TZ0 A; 2R05 A; 1UKW A; 4LQS B; 3II9 A; 5J71 A; 1IVH A; 4JIZ A; 3FO3 A; 4Q17 A; 1X91 A; 1PI1 A; 1WS9 A; 2OT4 A; 3MXL A; 2C12 A; 4G5E A; 3C46 A; 1SC5 A; 2BU6 A; 3Q24 A; 4O5M A; 1X90 A; 1RJ1 A; 4DZY A; 3BNH A; 3VKH A; 1XFW A; 4XVX A; 4MP2 A; 4MPE A; 2CJ7 A; 1OAH A; 3PFD A; 2YGW A; 4IV6 A; 2EBA A; 4JEK A; 2RF7 A; 4MPC A; 4Q5B A; 3SWO A; 4Q4U A; 4U83 A; 2DVL A; 3EOM A; 5GJW E; 4Q0T A; 5M4N A; 3MKH A; 5BRK A; 5M4K A; 1SIR A; 3TZ5 A; 4IRN A; 1R2J A; 3UBR A; 2RFQ A; 5K3I A; 3B96 A; 3VKG A; 2ZO5 A; 2XQR B; 2VR0 A; 4P13 A; 1K90 A; 4V25 A; 3RKH A; 3D9F A; 3SF6 A; 1JQI A; 4DOY A; 4HKR A; 2JIF A; 2Q8F A; 4L3Z A; 5BRM A; 4FF1 A; 4LQQ B; 2IX5 A; 2JBR A; 2VIG A; 3TZ4 A; 2ZDY A; 4JIO A; 2WBI A; 2A1T A; 2GBB A; 1RP3 A; 3MDD A; 1K93 A; 3X29 A; 4L38 A; 3X0Y A; 2FP2 A; 1K8T A; 3MMO A; 3Q0A A; 5J6A A; 2R03 A; 3OWM A; 4E01 A; 4E00 A; 2CJ8 A; 2Z1Q A; 1SIQ A; 2Q8H A; 3D6B A; 4F0X A; 1EGC A; 2XS1 A; 2FP1 A; 3L1T A; 3TTB A; 5K3H A; 1JM6 A; 1FS9 A; 2OR0 A; 1BUC A; 3MDE A; 3S7W A; 4KTO A; 5K3J A; 2ZDX A; 3FCJ A; 3M9V A; 1GU6 A; 1EGD A; 1XFU A; 4P79 A; 3C3L A; 1S26 A; 1T9G A; 1RX0 A; 1GJV A; 1XFY A; 2YYL A; 3BNF A; 1GKZ A; 3LG1 A; 3AFF A; 2E0A A; 4NXL A; 4Q1O A; 2JBS A; 2OJQ A; 2C0U A; 4KS9 A; 1UDY A; 2VF1 A; 3CRL A; 3D2R A; 4KCF A; 4M9A A; 2AO2 A; 2FON A; 4KSF A; 3OWA A; 4FF4 A; 2BU8 A; 4V26 A; 1SK6 A; 2CJ4 A; 1LVC A; 1Y0V A; 2CX9 A; 2YYK A; 4ZXV A; 2EBF X; 3SXQ A; 2UXW A; 2J7A A; 2JBT A; 5B5V A; 3AFE A; 3R7K A; 2REH A; 3TZ2 A; 5M4P A; 1FS7 A; 1QDB A; 4MPN A; 1IS2 A; 3EON A; 4G97 A; 2IX6 A; 4H7Q A; 5B5W A; 1Y8O A; 1RJ4 A; 2HJN A; 2DDH A; 2R0M A; 2Q8I A; 1XFV A; 4FF2 A; 1X8Z A; 2ZKJ A; 3UU9 A; 4L3X A; 2LFW A; 2QR4 A; 2AZE A; 2BTZ A; 3VAD A; 2BU2 A; 4J1V A; 4Q5C A; 2E80 A; 5M4M A; 4AKG A; 3BNJ A; 3D1I A; 2F6L A; 3D9G A; 4HR3 A; 2PNR A; 2YYG A; 3GM6 A; 4E02 A; 3GQT A; 3MPJ A; 3TOR A; 2RDZ A; 2YYI A; 1W07 A; 2E81 A; 3BNG A; 4L3Y A; 3KML A; 3GNC A; 3LGQ A; #chains in the Genus database with same CATH homology 2AO2 A; 4KSF A; 1K90 A; 3Q22 A; 2EBH X; 4FF4 A; 1SK6 A; 4HKR A; 1LVC A; 1Y0V A; 2EBF X; 4AI6 A; 4AKH A; 2GBB A; 3X29 A; 1RP3 A; 4G97 A; 1K93 A; 3C46 A; 1PK0 A; 1SC5 A; 1K8T A; 2FP2 A; 4FZ4 A; 3Q0A A; 3Q24 A; 3C2P A; 2EC5 A; 3VKH A; 1XFV A; 1XFX A; 1XFW A; 4F0X A; 3Q23 A; 4FF2 A; 2FP1 A; 2PO4 A; 5GJV E; 4KSA A; 2LFW A; 2YGW A; 2QR4 A; 2AZE A; 4QIC A; 3CE2 A; 4P79 A; 1XFU A; 3C3L A; 4AKI A; 5GJW E; 1S26 A; 4AKG A; 3N0R A; 2F6L A; 4FF3 A; 1XFY A; 1XFZ A; 4KS9 A; 4HKS A; 4FF1 A; 3KML A; 2VF1 A; 3VKG A;
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