The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
63
|
Knots found |
|
sequence length |
233
|
structure length |
206
|
Chain Sequence |
PVLTTNVTDFNYTPSHQKPFLDIKQIVEMTLGSEGVAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural and Functional Analysis of Saccharomyces cerevisiae Mob1.
pubmed doi rcsb |
| molecule tags |
Cell cycle
|
| molecule keywords |
Maintenance of ploidy protein MOB1
|
| total genus |
63
|
| structure length |
206
|
| sequence length |
233
|
| other databases |
 KnotProt 2.0: S +31
|
| ec nomenclature | |
| pdb deposition date | 2006-06-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03637 | Mob1_phocein | Mob1/phocein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | MOB kinase activator |
#chains in the Genus database with same CATH superfamily 4JIZ A; 5BRK A; 5BRM A; 4J1V A; 4LQS B; 2HJN A; 4LQQ B; 5B5V A; 5B6B A; 1PI1 A; 5B5W A; 1R3B A; #chains in the Genus database with same CATH topology 4HR3 A; 3OWA A; 3C3L A; 4E01 A; 2HJN A; 2CJ4 A; 1FS9 A; 2E0A A; 1XFU A; 2GBB A; 3D6B A; 3GQT A; 4FF4 A; 4FF1 A; 4AKI A; 1W07 A; 3UBR A; 4AKH A; 2Q8F A; 3L1T A; 1SK6 A; 1XFV A; 2AZE A; 4KSA A; 4M9A A; 3TZ2 A; 2CJ7 A; 5K3J A; 2Q8G A; 4HKR A; 3Q0A A; 2YYM A; 4F0X A; 1GJV A; 4MPN A; 3X29 A; 3AFF A; 3KML A; 2E80 A; 2J7A A; 3MXL A; 1PK0 A; 3OWM A; 1XG2 B; 4L1F A; 4ZXV A; 2REH A; 2PO4 A; 3P4T A; 1BUC A; 3GNC A; 4G5E A; 2EBH X; 4V26 A; 3TZ4 A; 2XS1 A; 4ZYJ A; 3N0R A; 1FS7 A; 2ZDY A; 2OEV A; 4MP7 A; 4RM7 A; 4H85 A; 3D9F A; 2FON A; 1Y8N A; 2WBI A; 4V25 A; 2R0M A; 3S7W A; 2YYG A; 2IX6 A; 2ZO5 A; 1K93 A; 3NF4 A; 1GKX A; 1RJ1 A; 2ZKJ A; 5J6A A; 4KTO A; 4Q4U A; 4W9U A; 4DOY A; 3X0X A; 4L3Z A; 3FO3 A; 3CRK A; 2R05 A; 4HKS A; 1K8T A; 3EOM A; 2QR4 A; 2C0U A; 1SIQ A; 3UU9 A; 4L38 A; 4IRN A; 5BRK A; 4JIO A; 1XFY A; 2F6L A; 4H81 A; 5B5V A; 2YYI A; 4QIC A; 3RKH A; 1XFW A; 1X90 A; 3B96 A; 3SCE A; 1Y0V A; 4L3X A; 2D29 A; 2CX9 A; 2RDZ A; 4KS9 A; 2Z1Q A; 4AKG A; 3BNF A; 2EBA A; 2IX5 A; 2RF7 A; 2VIG A; 5J71 A; 3HWC A; 2CJ8 A; 3MPI A; 4JEK A; 3MPJ A; 1Y8O A; 1RX0 A; 2YGW A; 3Q22 A; 2OEX A; 3VAD A; 4Q17 A; 1XFX A; 2R03 A; 1EGD A; 2OR0 A; 3D9E A; 2VF1 A; 4KCF A; 2UXW A; 4X28 A; 1UDY A; 5B5W A; 4P79 A; 4FZ4 A; 3VKH A; 4MPE A; 4FF2 A; 2EC5 A; 3OIB A; 3SWO A; 5K3I A; 2JBS A; 4IV6 A; 4LQS B; 5K3G A; 3SXQ A; 3EON A; 4L3Y A; 1PI1 A; 2E81 A; 3PFD A; 1SC5 A; 4O5M A; 2DVL A; 4H7Q A; 1GU6 A; 1XFZ A; 4KSF A; 3C2P A; 1UKW A; 3R7K A; 4Q1O A; 1RJ4 A; 4LQQ B; 4E00 A; 5M4M A; 3TTB A; 3CRL A; 4N5F A; 4NXL A; 4XVX A; 2OJQ A; 3LGQ A; 2BTZ A; 1LVC A; 3TZ5 A; 2XQR B; 5M4N A; 3II9 A; 3C46 A; 3MDE A; 3MKH A; 4X28 C; 2BU7 A; 2C12 A; 2DDH A; 2RFQ A; 3D2R A; 1U8V A; 4Q5B A; 5GJW E; 2JIF A; 2R02 A; 4MPC A; 4OO2 A; 2YYL A; 4J1V A; 3D1I A; 3CE2 A; 1R2J A; 1IVH A; 3BNH A; 3D9D A; 1X91 A; 1R3B A; 1QDB A; 3M9V A; 2LFW A; 2OT4 A; 2FP1 A; 2ZAF A; 2BU6 A; 1K90 A; 2EBF X; 3BNJ A; 3D9G A; 1EGC A; 3GM6 A; 3MMO A; 5BRM A; 1X8Z A; 3Q23 A; 5GJV E; 3FCJ A; 3Q24 A; 3F29 A; 3BNG A; 4E02 A; 3SF6 A; 1IS2 A; 1RP3 A; 1GKZ A; 3MDD A; 4WJY A; 1T9G A; 2BU8 A; 2ZDX A; 2A1T A; 2JBR A; 5K3H A; 2AO2 A; 2PG0 A; 3X0Y A; 1EGE A; 2Q8I A; 4G97 A; 1JM6 A; 1JQI A; 2VR0 A; 2R0N A; 1WS9 A; 1S26 A; 4JIZ A; 4Q0T A; 2CJ6 A; 2BU2 A; 3AFE A; 2Q8H A; 4AI6 A; 3TZ0 A; 4DZY A; 4P13 A; 5M4P A; 1SIR A; 4MP2 A; 3TOR A; 2PNR A; 3LG1 A; 1FS8 A; 2BU5 A; 4U83 A; 2YYJ A; 3VKG A; 1Y8P A; 2XS8 A; 5B6B A; 4FF3 A; 5M4K A; 1OAH A; 2FP2 A; 2JBT A; 2CJ5 A; 4Q5C A; 2YYK A; #chains in the Genus database with same CATH homology 4JIZ A; 5BRK A; 5BRM A; 4J1V A; 4LQS B; 2HJN A; 4LQQ B; 5B5V A; 5B6B A; 1PI1 A; 5B5W A; 1R3B A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
