2HJNA

Structural and functional analysis of saccharomyces cerevisiae mob1
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
Knots found
sequence length
233
structure length
206
Chain Sequence
PVLTTNVTDFNYTPSHQKPFLDIKQIVEMTLGSEGVAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
publication title Structural and Functional Analysis of Saccharomyces cerevisiae Mob1.
pubmed doi rcsb
molecule keywords Maintenance of ploidy protein MOB1
total genus 63
structure length 206
sequence length 233
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03637 Mob1_phocein Mob1/phocein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.30 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 MOB kinase activator 2hjnA00
1R3BA 1PI1A 2HJNA 5BRKA 5B5VA 5B5WA 4JIZA 5BRMA 5B6BA 4LQQB 4J1VA 4LQSB
chains in the Genus database with same CATH superfamily
2BU8A 1R3BA 4N5FA 4OO2A 4Q5BA 4W9UA 3TZ5A 3VKHA 2EC5A 3BNGA 5B5VA 5BRMA 2E0AA 4V26A 4Q1OA 1RJ4A 2UXWA 3N0RA 1FS7A 5GJWE 4MP2A 2YYJA 5GJVE 4RM7A 2Q8FA 5BRKA 1XFUA 3OWMA 5M4MA 1WS9A 2ZDXA 1X91A 4E00A 3C3LA 3P4TA 4G97A 3TTBA 4XVXA 2BU5A 4E01A 2ZO5A 4KS9A 2R05A 3D9EA 3AFFA 4ZYJA 4F0XA 1EGCA 1XFWA 1Y8OA 2VF1A 4AKHA 1Y8NA 3GNCA 4U83A 4AI6A 2J7AA 2REHA 3GM6A 4MPNA 1XFVA 2E80A 2ZKJA 1GKZA 2BU7A 2GBBA 2PG0A 3GQTA 3SF6A 4Q0TA 2F6LA 4L1FA 5K3HA 1QDBA 3CRLA 2FP2A 2QR4A 4HKSA 2CJ8A 3MXLA 3TZ4A 3VADA 2C12A 2ZAFA 3M9VA 3HWCA 3X29A 1XFZA 2JBSA 3D9FA 3LG1A 4IRNA 4KSFA 2C0UA 1UKWA 4HKRA 3TZ2A 2A1TA 2OEVA 1IVHA 1Y8PA 2CJ7A 4JEKA 2JIFA 4E02A 5B6BA 2YGWA 4X28A 4WJYA 4L3ZA 2AZEA 4X28C 1JM6A 3KMLA 3UBRA 1R2JA 3TZ0A 4Q17A 2CJ4A 5M4PA 4FF2A 4H81A 3Q0AA 1X8ZA 1GJVA 1RX0A 4IV6A 5J6AA 2OR0A 3BNFA 4LQQB 2IX6A 1U8VA 2XS8A 1OAHA 1BUCA 2YYKA 2HJNA 5M4NA 4H85A 4NXLA 1K90A 5B5WA 1FS8A 3UU9A 3CE2A 3SWOA 2DVLA 3FCJA 4O5MA 2JBTA 4JIOA 4DZYA 2R0NA 2Q8HA 3Q22A 4MPEA 1X90A 4Q5CA 3NF4A 4MP7A 4FZ4A 2PNRA 3BNHA 1SIQA 2IX5A 3D9GA 3EONA 4L3YA 3CRKA 3MDDA 2FONA 3C2PA 4LQSB 5K3IA 4AKGA 1GU6A 2EBFX 5K3JA 1IS2A 4P79A 3AFEA 4KTOA 2Z1QA 1K93A 1GKXA 2BU6A 2CJ5A 2FP1A 2OJQA 2BTZA 2XS1A 3MKHA 3MDEA 4KCFA 3SXQA 2YYGA 5M4KA 2RFQA 2CX9A 2R03A 4L38A 1T9GA 1Y0VA 1UDYA 2Q8GA 4L3XA 3F29A 3TORA 2EBAA 4QICA 2R0MA 3OIBA 4JIZA 4ZXVA 5J71A 3OWAA 1SK6A 4HR3A 3MPJA 4MPCA 2EBHX 3II9A 1K8TA 3VKGA 1PK0A 1RJ1A 2RDZA 4H7QA 1XG2B 2R02A 2LFWA 1SC5A 2OT4A 3B96A 1W07A 3L1TA 4DOYA 3EOMA 4FF4A 5K3GA 3Q23A 4G5EA 3D6BA 4M9AA 1EGEA 1PI1A 2E81A 1JQIA 1XFYA 2YYIA 3PFDA 3D1IA 3S7WA 2AO2A 3C46A 2ZDYA 2BU2A 1EGDA 4KSAA 4Q4UA 4V25A 2YYMA 3R7KA 4FF1A 3D2RA 3BNJA 3MPIA 3MMOA 3X0XA 1RP3A 1LVCA 2JBRA 3D9DA 3RKHA 4FF3A 4AKIA 3LGQA 4P13A 3X0YA 3FO3A 3Q24A 2DDHA 2RF7A 2WBIA 2VR0A 2D29A 2OEXA 3SCEA 2XQRB 2Q8IA 1S26A 2CJ6A 2VIGA 2PO4A 1FS9A 1SIRA 4J1VA 2YYLA 1XFXA
chains in the Genus database with same CATH topology
1R3BA 1PI1A 2HJNA 5BRKA 5B5VA 5B5WA 4JIZA 5BRMA 5B6BA 4LQQB 4J1VA 4LQSB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R3B A;  1PI1 A;  2HJN A;  5BRK A;  5B5V A;  5B5W A;  4JIZ A;  5BRM A;  5B6B A;  4LQQ B;  4J1V A;  4LQS B; 
#chains in the Genus database with same CATH topology
 2BU8 A;  1R3B A;  4N5F A;  4OO2 A;  4Q5B A;  4W9U A;  3TZ5 A;  3VKH A;  2EC5 A;  3BNG A;  5B5V A;  5BRM A;  2E0A A;  4V26 A;  4Q1O A;  1RJ4 A;  2UXW A;  3N0R A;  1FS7 A;  5GJW E;  4MP2 A;  2YYJ A;  5GJV E;  4RM7 A;  2Q8F A;  5BRK A;  1XFU A;  3OWM A;  5M4M A;  1WS9 A;  2ZDX A;  1X91 A;  4E00 A;  3C3L A;  3P4T A;  4G97 A;  3TTB A;  4XVX A;  2BU5 A;  4E01 A;  2ZO5 A;  4KS9 A;  2R05 A;  3D9E A;  3AFF A;  4ZYJ A;  4F0X A;  1EGC A;  1XFW A;  1Y8O A;  2VF1 A;  4AKH A;  1Y8N A;  3GNC A;  4U83 A;  4AI6 A;  2J7A A;  2REH A;  3GM6 A;  4MPN A;  1XFV A;  2E80 A;  2ZKJ A;  1GKZ A;  2BU7 A;  2GBB A;  2PG0 A;  3GQT A;  3SF6 A;  4Q0T A;  2F6L A;  4L1F A;  5K3H A;  1QDB A;  3CRL A;  2FP2 A;  2QR4 A;  4HKS A;  2CJ8 A;  3MXL A;  3TZ4 A;  3VAD A;  2C12 A;  2ZAF A;  3M9V A;  3HWC A;  3X29 A;  1XFZ A;  2JBS A;  3D9F A;  3LG1 A;  4IRN A;  4KSF A;  2C0U A;  1UKW A;  4HKR A;  3TZ2 A;  2A1T A;  2OEV A;  1IVH A;  1Y8P A;  2CJ7 A;  4JEK A;  2JIF A;  4E02 A;  5B6B A;  2YGW A;  4X28 A;  4WJY A;  4L3Z A;  2AZE A;  4X28 C;  1JM6 A;  3KML A;  3UBR A;  1R2J A;  3TZ0 A;  4Q17 A;  2CJ4 A;  5M4P A;  4FF2 A;  4H81 A;  3Q0A A;  1X8Z A;  1GJV A;  1RX0 A;  4IV6 A;  5J6A A;  2OR0 A;  3BNF A;  4LQQ B;  2IX6 A;  1U8V A;  2XS8 A;  1OAH A;  1BUC A;  2YYK A;  2HJN A;  5M4N A;  4H85 A;  4NXL A;  1K90 A;  5B5W A;  1FS8 A;  3UU9 A;  3CE2 A;  3SWO A;  2DVL A;  3FCJ A;  4O5M A;  2JBT A;  4JIO A;  4DZY A;  2R0N A;  2Q8H A;  3Q22 A;  4MPE A;  1X90 A;  4Q5C A;  3NF4 A;  4MP7 A;  4FZ4 A;  2PNR A;  3BNH A;  1SIQ A;  2IX5 A;  3D9G A;  3EON A;  4L3Y A;  3CRK A;  3MDD A;  2FON A;  3C2P A;  4LQS B;  5K3I A;  4AKG A;  1GU6 A;  2EBF X;  5K3J A;  1IS2 A;  4P79 A;  3AFE A;  4KTO A;  2Z1Q A;  1K93 A;  1GKX A;  2BU6 A;  2CJ5 A;  2FP1 A;  2OJQ A;  2BTZ A;  2XS1 A;  3MKH A;  3MDE A;  4KCF A;  3SXQ A;  2YYG A;  5M4K A;  2RFQ A;  2CX9 A;  2R03 A;  4L38 A;  1T9G A;  1Y0V A;  1UDY A;  2Q8G A;  4L3X A;  3F29 A;  3TOR A;  2EBA A;  4QIC A;  2R0M A;  3OIB A;  4JIZ A;  4ZXV A;  5J71 A;  3OWA A;  1SK6 A;  4HR3 A;  3MPJ A;  4MPC A;  2EBH X;  3II9 A;  1K8T A;  3VKG A;  1PK0 A;  1RJ1 A;  2RDZ A;  4H7Q A;  1XG2 B;  2R02 A;  2LFW A;  1SC5 A;  2OT4 A;  3B96 A;  1W07 A;  3L1T A;  4DOY A;  3EOM A;  4FF4 A;  5K3G A;  3Q23 A;  4G5E A;  3D6B A;  4M9A A;  1EGE A;  1PI1 A;  2E81 A;  1JQI A;  1XFY A;  2YYI A;  3PFD A;  3D1I A;  3S7W A;  2AO2 A;  3C46 A;  2ZDY A;  2BU2 A;  1EGD A;  4KSA A;  4Q4U A;  4V25 A;  2YYM A;  3R7K A;  4FF1 A;  3D2R A;  3BNJ A;  3MPI A;  3MMO A;  3X0X A;  1RP3 A;  1LVC A;  2JBR A;  3D9D A;  3RKH A;  4FF3 A;  4AKI A;  3LGQ A;  4P13 A;  3X0Y A;  3FO3 A;  3Q24 A;  2DDH A;  2RF7 A;  2WBI A;  2VR0 A;  2D29 A;  2OEX A;  3SCE A;  2XQR B;  2Q8I A;  1S26 A;  2CJ6 A;  2VIG A;  2PO4 A;  1FS9 A;  1SIR A;  4J1V A;  2YYL A;  1XFX A; 
#chains in the Genus database with same CATH homology
 1R3B A;  1PI1 A;  2HJN A;  5BRK A;  5B5V A;  5B5W A;  4JIZ A;  5BRM A;  5B6B A;  4LQQ B;  4J1V A;  4LQS B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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