2HJNA

Structural and functional analysis of saccharomyces cerevisiae mob1
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
Knots found
sequence length
233
structure length
206
Chain Sequence
PVLTTNVTDFNYTPSHQKPFLDIKQIVEMTLGSEGVAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
publication title Structural and Functional Analysis of Saccharomyces cerevisiae Mob1.
pubmed doi rcsb
molecule keywords Maintenance of ploidy protein MOB1
total genus 63
structure length 206
sequence length 233
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2006-06-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03637 Mob1_phocein Mob1/phocein family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.30 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 MOB kinase activator 2hjnA00
4LQQB 2HJNA 5B6BA 5BRKA 4JIZA 1R3BA 5B5VA 4LQSB 5BRMA 5B5WA 4J1VA 1PI1A
chains in the Genus database with same CATH superfamily
4WJYA 4KSFA 1GJVA 2UXWA 4G97A 4KSAA 1GU6A 4JIOA 1RJ4A 2RDZA 3RKHA 4ZYJA 1X91A 4N5FA 1R2JA 4J1VA 3C3LA 5J71A 3C2PA 1X8ZA 2RF7A 2BU7A 3OWAA 4Q4UA 2E81A 3EONA 4P13A 1GKZA 3TZ2A 4DOYA 1K90A 3C46A 2ZAFA 2EBFX 3KMLA 1K8TA 2XS8A 3VADA 5GJVE 3D2RA 2OT4A 2QR4A 2OEVA 1EGEA 2ZO5A 2Q8GA 1X90A 1UDYA 3D6BA 2BU8A 3CRKA 3L1TA 3OIBA 4KTOA 4L3XA 4Q5CA 2ZDXA 3SXQA 3X0YA 2E80A 4RM7A 4FF2A 2ZDYA 3FO3A 4Q5BA 4Q0TA 3VKHA 4FF4A 3LGQA 2IX6A 3CRLA 4E00A 4O5MA 2EBHX 2FONA 2R05A 5K3JA 1IS2A 1SIQA 5BRKA 2PG0A 3UBRA 4AKIA 4L3YA 3B96A 4QICA 4Q1OA 1XFWA 4MP7A 1RJ1A 4E01A 3R7KA 3Q24A 4AI6A 2JBSA 2CJ6A 2Z1QA 2GBBA 3II9A 2R0NA 2D29A 5K3IA 5M4KA 2BU6A 4LQSB 1FS7A 2VF1A 3CE2A 3D9FA 3GM6A 4L38A 4E02A 2CJ8A 4L1FA 2BU5A 1K93A 1SIRA 2CJ7A 5M4MA 1XG2B 2JBRA 2DVLA 1XFVA 1XFUA 2XS1A 2YYGA 1R3BA 4V25A 4HR3A 4JEKA 3D9EA 4W9UA 1UKWA 2R02A 4X28A 5GJWE 2C0UA 2OEXA 3TZ0A 5B5WA 3VKGA 3MKHA 4V26A 1U8VA 3S7WA 4AKHA 2YYLA 3F29A 1FS9A 1PK0A 4MPCA 4HKRA 4F0XA 1RX0A 1FS8A 2PO4A 4MPNA 2VIGA 2VR0A 2REHA 3EOMA 3TORA 4FF1A 5J6AA 2WBIA 3N0RA 3UU9A 2BTZA 3MDDA 1Y0VA 3M9VA 4XVXA 1JQIA 1Y8OA 4P79A 1WS9A 4LQQB 2PNRA 3Q23A 3X0XA 3D9DA 2AZEA 2CX9A 2RFQA 2Q8FA 2YYJA 1JM6A 3BNFA 4MP2A 3MPJA 2YGWA 1Y8NA 1RP3A 4IRNA 2A1TA 2OJQA 2R03A 3X29A 4FF3A 3LG1A 2ZKJA 3MPIA 4X28C 4H81A 4KCFA 2IX5A 2F6LA 2EBAA 1GKXA 1SC5A 4L3ZA 4KS9A 1XFZA 2BU2A 4H85A 3SF6A 4G5EA 3SWOA 5BRMA 3FCJA 5M4PA 2YYIA 3D1IA 2E0AA 3GQTA 3TZ5A 1W07A 4MPEA 3TTBA 3TZ4A 4ZXVA 2EC5A 3BNGA 3AFFA 2J7AA 5K3GA 3OWMA 4AKGA 1SK6A 3BNJA 3Q0AA 3MMOA 3NF4A 1S26A 1IVHA 1Y8PA 2FP1A 1EGDA 5B5VA 3SCEA 5K3HA 1T9GA 1XFYA 1XFXA 2OR0A 2C12A 1BUCA 1EGCA 2CJ5A 4JIZA 2Q8HA 3AFEA 2JIFA 3GNCA 2DDHA 3BNHA 2HJNA 4IV6A 4OO2A 5B6BA 2YYKA 1LVCA 3P4TA 2LFWA 4Q17A 3D9GA 4H7QA 1QDBA 4DZYA 2XQRB 4U83A 4M9AA 2R0MA 2YYMA 3MDEA 2Q8IA 4FZ4A 5M4NA 2JBTA 2AO2A 2FP2A 3HWCA 3Q22A 3PFDA 1OAHA 4HKSA 4NXLA 1PI1A 3MXLA 2CJ4A
chains in the Genus database with same CATH topology
4LQQB 2HJNA 5B6BA 5BRKA 4JIZA 1R3BA 5B5VA 4LQSB 5BRMA 5B5WA 4J1VA 1PI1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LQQ B;  2HJN A;  5B6B A;  5BRK A;  4JIZ A;  1R3B A;  5B5V A;  4LQS B;  5BRM A;  5B5W A;  4J1V A;  1PI1 A; 
#chains in the Genus database with same CATH topology
 4WJY A;  4KSF A;  1GJV A;  2UXW A;  4G97 A;  4KSA A;  1GU6 A;  4JIO A;  1RJ4 A;  2RDZ A;  3RKH A;  4ZYJ A;  1X91 A;  4N5F A;  1R2J A;  4J1V A;  3C3L A;  5J71 A;  3C2P A;  1X8Z A;  2RF7 A;  2BU7 A;  3OWA A;  4Q4U A;  2E81 A;  3EON A;  4P13 A;  1GKZ A;  3TZ2 A;  4DOY A;  1K90 A;  3C46 A;  2ZAF A;  2EBF X;  3KML A;  1K8T A;  2XS8 A;  3VAD A;  5GJV E;  3D2R A;  2OT4 A;  2QR4 A;  2OEV A;  1EGE A;  2ZO5 A;  2Q8G A;  1X90 A;  1UDY A;  3D6B A;  2BU8 A;  3CRK A;  3L1T A;  3OIB A;  4KTO A;  4L3X A;  4Q5C A;  2ZDX A;  3SXQ A;  3X0Y A;  2E80 A;  4RM7 A;  4FF2 A;  2ZDY A;  3FO3 A;  4Q5B A;  4Q0T A;  3VKH A;  4FF4 A;  3LGQ A;  2IX6 A;  3CRL A;  4E00 A;  4O5M A;  2EBH X;  2FON A;  2R05 A;  5K3J A;  1IS2 A;  1SIQ A;  5BRK A;  2PG0 A;  3UBR A;  4AKI A;  4L3Y A;  3B96 A;  4QIC A;  4Q1O A;  1XFW A;  4MP7 A;  1RJ1 A;  4E01 A;  3R7K A;  3Q24 A;  4AI6 A;  2JBS A;  2CJ6 A;  2Z1Q A;  2GBB A;  3II9 A;  2R0N A;  2D29 A;  5K3I A;  5M4K A;  2BU6 A;  4LQS B;  1FS7 A;  2VF1 A;  3CE2 A;  3D9F A;  3GM6 A;  4L38 A;  4E02 A;  2CJ8 A;  4L1F A;  2BU5 A;  1K93 A;  1SIR A;  2CJ7 A;  5M4M A;  1XG2 B;  2JBR A;  2DVL A;  1XFV A;  1XFU A;  2XS1 A;  2YYG A;  1R3B A;  4V25 A;  4HR3 A;  4JEK A;  3D9E A;  4W9U A;  1UKW A;  2R02 A;  4X28 A;  5GJW E;  2C0U A;  2OEX A;  3TZ0 A;  5B5W A;  3VKG A;  3MKH A;  4V26 A;  1U8V A;  3S7W A;  4AKH A;  2YYL A;  3F29 A;  1FS9 A;  1PK0 A;  4MPC A;  4HKR A;  4F0X A;  1RX0 A;  1FS8 A;  2PO4 A;  4MPN A;  2VIG A;  2VR0 A;  2REH A;  3EOM A;  3TOR A;  4FF1 A;  5J6A A;  2WBI A;  3N0R A;  3UU9 A;  2BTZ A;  3MDD A;  1Y0V A;  3M9V A;  4XVX A;  1JQI A;  1Y8O A;  4P79 A;  1WS9 A;  4LQQ B;  2PNR A;  3Q23 A;  3X0X A;  3D9D A;  2AZE A;  2CX9 A;  2RFQ A;  2Q8F A;  2YYJ A;  1JM6 A;  3BNF A;  4MP2 A;  3MPJ A;  2YGW A;  1Y8N A;  1RP3 A;  4IRN A;  2A1T A;  2OJQ A;  2R03 A;  3X29 A;  4FF3 A;  3LG1 A;  2ZKJ A;  3MPI A;  4X28 C;  4H81 A;  4KCF A;  2IX5 A;  2F6L A;  2EBA A;  1GKX A;  1SC5 A;  4L3Z A;  4KS9 A;  1XFZ A;  2BU2 A;  4H85 A;  3SF6 A;  4G5E A;  3SWO A;  5BRM A;  3FCJ A;  5M4P A;  2YYI A;  3D1I A;  2E0A A;  3GQT A;  3TZ5 A;  1W07 A;  4MPE A;  3TTB A;  3TZ4 A;  4ZXV A;  2EC5 A;  3BNG A;  3AFF A;  2J7A A;  5K3G A;  3OWM A;  4AKG A;  1SK6 A;  3BNJ A;  3Q0A A;  3MMO A;  3NF4 A;  1S26 A;  1IVH A;  1Y8P A;  2FP1 A;  1EGD A;  5B5V A;  3SCE A;  5K3H A;  1T9G A;  1XFY A;  1XFX A;  2OR0 A;  2C12 A;  1BUC A;  1EGC A;  2CJ5 A;  4JIZ A;  2Q8H A;  3AFE A;  2JIF A;  3GNC A;  2DDH A;  3BNH A;  2HJN A;  4IV6 A;  4OO2 A;  5B6B A;  2YYK A;  1LVC A;  3P4T A;  2LFW A;  4Q17 A;  3D9G A;  4H7Q A;  1QDB A;  4DZY A;  2XQR B;  4U83 A;  4M9A A;  2R0M A;  2YYM A;  3MDE A;  2Q8I A;  4FZ4 A;  5M4N A;  2JBT A;  2AO2 A;  2FP2 A;  3HWC A;  3Q22 A;  3PFD A;  1OAH A;  4HKS A;  4NXL A;  1PI1 A;  3MXL A;  2CJ4 A; 
#chains in the Genus database with same CATH homology
 4LQQ B;  2HJN A;  5B6B A;  5BRK A;  4JIZ A;  1R3B A;  5B5V A;  4LQS B;  5BRM A;  5B5W A;  4J1V A;  1PI1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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