The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
157
|
structure length |
157
|
Chain Sequence |
MSLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDVDPRLGLYRMFQGIWASANADGEAQTSQSDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHHH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria.
pubmed doi rcsb |
| molecule tags |
Signaling protein
|
| source organism |
Sphingomonas sp. fr1
|
| molecule keywords |
PhyR sigma-like domain
|
| total genus |
44
|
| structure length |
157
|
| sequence length |
157
|
| ec nomenclature | |
| pdb deposition date | 2011-07-18 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 |
#chains in the Genus database with same CATH superfamily 4G97 A; 2LFW A; 1RP3 A; 4QIC A; 1SC5 A; 3N0R A; #chains in the Genus database with same CATH topology 3HWC A; 4E00 A; 1IVH A; 2OEX A; 2R0N A; 1EGC A; 1GKZ A; 3D2R A; 3N0R A; 5K3H A; 3EOM A; 2GBB A; 2EC5 A; 2J7A A; 4KSF A; 1RJ4 A; 2YYK A; 3BNF A; 4N5F A; 1RP3 A; 4OO2 A; 4E02 A; 3C3L A; 4HKS A; 4KS9 A; 2BU7 A; 4P79 A; 3UU9 A; 2CJ8 A; 3TZ4 A; 3MXL A; 5BRK A; 1K8T A; 4IRN A; 4F0X A; 2C0U A; 4KCF A; 5M4P A; 3BNG A; 1EGD A; 2EBA A; 2OR0 A; 1Y8N A; 3TZ0 A; 1K90 A; 2PNR A; 3CRL A; 3AFF A; 1XG2 B; 2JIF A; 4FF1 A; 1XFU A; 2Q8H A; 4AKH A; 1EGE A; 3D6B A; 1IS2 A; 2F6L A; 2EBH X; 2YYL A; 3D9E A; 3MPJ A; 4H81 A; 5GJV E; 2PO4 A; 2YYJ A; 3BNJ A; 4MP7 A; 3OIB A; 4H7Q A; 2ZDY A; 2BU5 A; 1X90 A; 2AZE A; 4O5M A; 3D9F A; 2E0A A; 4V25 A; 1SC5 A; 2E81 A; 2Q8I A; 2FP2 A; 3B96 A; 3Q23 A; 3C46 A; 3EON A; 2R0M A; 5M4M A; 3VKH A; 1GU6 A; 2OEV A; 3SCE A; 4E01 A; 4QIC A; 2FON A; 2QR4 A; 2VR0 A; 4L1F A; 3Q22 A; 2Q8G A; 4W9U A; 2JBT A; 4G5E A; 3D9D A; 2OT4 A; 5J71 A; 1U8V A; 5B6B A; 2DVL A; 2RDZ A; 5J6A A; 3GQT A; 2C12 A; 2A1T A; 4L3Z A; 4AI6 A; 4HR3 A; 1UKW A; 1XFY A; 2ZDX A; 5K3I A; 4DOY A; 2CJ4 A; 1X8Z A; 4LQS B; 1XFX A; 3CE2 A; 1SK6 A; 1PK0 A; 3FO3 A; 2VF1 A; 2XQR B; 2PG0 A; 3L1T A; 5M4K A; 4FF2 A; 4FZ4 A; 3S7W A; 3CRK A; 5GJW E; 2HJN A; 2YYI A; 4Q0T A; 4Q5C A; 3FCJ A; 1K93 A; 2R02 A; 2ZKJ A; 3D9G A; 4HKR A; 4L3X A; 2BU8 A; 4IV6 A; 4L3Y A; 4M9A A; 2ZAF A; 3SXQ A; 3Q24 A; 2DDH A; 2JBS A; 3TZ5 A; 1XFW A; 2AO2 A; 4KTO A; 4JIO A; 1LVC A; 1RX0 A; 2XS8 A; 2RFQ A; 3MDE A; 4P13 A; 2E80 A; 3GM6 A; 3SF6 A; 4U83 A; 2CJ5 A; 4G97 A; 2R03 A; 3LG1 A; 4J1V A; 3D1I A; 4X28 A; 1RJ1 A; 3C2P A; 4MPE A; 1R3B A; 4L38 A; 3F29 A; 1SIR A; 1W07 A; 1XFV A; 2D29 A; 2RF7 A; 4KSA A; 1QDB A; 4X28 C; 4FF4 A; 1OAH A; 3X0Y A; 1JM6 A; 1T9G A; 3MKH A; 3P4T A; 2Q8F A; 2VIG A; 3X29 A; 3X0X A; 1PI1 A; 1X91 A; 2CJ7 A; 1JQI A; 1FS8 A; 3TOR A; 2YGW A; 4LQQ B; 2FP1 A; 4AKG A; 4Q5B A; 4DZY A; 1FS9 A; 3VKG A; 3II9 A; 3MPI A; 4NXL A; 2YYG A; 2IX6 A; 3PFD A; 3R7K A; 4Q4U A; 3GNC A; 5B5W A; 3NF4 A; 4JIZ A; 2Z1Q A; 2YYM A; 2IX5 A; 2JBR A; 2LFW A; 2ZO5 A; 1FS7 A; 4ZYJ A; 3BNH A; 5K3J A; 3MMO A; 1Y0V A; 1GKX A; 2BU2 A; 2BU6 A; 4MP2 A; 1SIQ A; 4WJY A; 4AKI A; 4XVX A; 1XFZ A; 3LGQ A; 3RKH A; 3SWO A; 2REH A; 2EBF X; 2R05 A; 1Y8P A; 4Q1O A; 3AFE A; 2OJQ A; 3VAD A; 3Q0A A; 4RM7 A; 2UXW A; 5K3G A; 1S26 A; 5B5V A; 5BRM A; 1R2J A; 4MPN A; 2CJ6 A; 3KML A; 4ZXV A; 3MDD A; 1BUC A; 1Y8O A; 4MPC A; 3OWM A; 4V26 A; 5M4N A; 4FF3 A; 1GJV A; 3TTB A; 2BTZ A; 3OWA A; 1UDY A; 2CX9 A; 2WBI A; 4H85 A; 2XS1 A; 3M9V A; 4JEK A; 1WS9 A; 3UBR A; 3TZ2 A; 4Q17 A; #chains in the Genus database with same CATH homology 1K93 A; 2AZE A; 4HKR A; 3VKG A; 1SC5 A; 3Q24 A; 1XFW A; 2AO2 A; 2FP2 A; 3N0R A; 3Q23 A; 3C46 A; 1LVC A; 3VKH A; 2GBB A; 2EC5 A; 4KSF A; 3C3L A; 2LFW A; 4G97 A; 1RP3 A; 4QIC A; 4AKI A; 4AI6 A; 1Y0V A; 2QR4 A; 4HKS A; 4KS9 A; 3Q22 A; 4P79 A; 1XFZ A; 3C2P A; 1K8T A; 2EBF X; 4F0X A; 3Q0A A; 1XFV A; 1S26 A; 4KSA A; 4FF4 A; 1XFY A; 1K90 A; 3KML A; 4FF3 A; 4FF1 A; 1XFU A; 4AKH A; 3X29 A; 1XFX A; 2F6L A; 2EBH X; 3CE2 A; 1SK6 A; 5GJV E; 1PK0 A; 2PO4 A; 2VF1 A; 2YGW A; 4AKG A; 2FP1 A; 4FF2 A; 4FZ4 A; 5GJW E;
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