2LFWA

Nmr structure of the phyrsl-nepr complex from sphingomonas sp. fr1
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
157
structure length
157
Chain Sequence
MSLGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDVDPRLGLYRMFQGIWASANADGEAQTSQSDAEGTEAVARARLARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for sigma factor mimicry in the general stress response of Alphaproteobacteria.
pubmed doi rcsb
molecule tags Signaling protein
source organism Sphingomonas sp. fr1
molecule keywords PhyR sigma-like domain
total genus 44
structure length 157
sequence length 157
ec nomenclature
pdb deposition date 2011-07-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.160 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 2lfwA01
2LFWA 3N0RA 4G97A 1RP3A 4QICA 1SC5A
chains in the Genus database with same CATH superfamily
4L3ZA 1X91A 2BU7A 3MMOA 2AO2A 1UDYA 3LGQA 1GKXA 4G97A 4MPCA 5GJVE 1GJVA 4AKGA 4IV6A 2AZEA 4QICA 3VKGA 4LQSB 4H85A 3GNCA 3SXQA 2OEXA 1PK0A 2DVLA 5M4NA 1U8VA 3UU9A 1T9GA 3S7WA 3B96A 1S26A 5B6BA 3P4TA 3SWOA 1X8ZA 4HR3A 2R05A 2XQRB 4Q5CA 3D1IA 4Q17A 2OT4A 2JBRA 4L1FA 3X0XA 2Q8HA 3X0YA 1K93A 4H7QA 2RDZA 2VIGA 4ZYJA 1R3BA 3C46A 2YYIA 4P13A 4HKRA 1WS9A 2LFWA 3D9EA 2YYGA 3SCEA 3MDDA 5K3JA 4E02A 5BRKA 2VR0A 3LG1A 1K90A 3D9FA 3NF4A 4IRNA 3TZ4A 3Q0AA 2IX5A 2CJ5A 4Q1OA 1W07A 1EGEA 2EBAA 1OAHA 1XFYA 2R0MA 4JIOA 1XFXA 4XVXA 5M4KA 3KMLA 4X28C 5GJWE 2RF7A 2E0AA 4ZXVA 3MXLA 4KTOA 2YYJA 4JEKA 4AKIA 4L38A 3BNHA 4KCFA 2OJQA 4L3YA 1Y0VA 2EBHX 2CX9A 2A1TA 1GU6A 1XFWA 5K3GA 3BNJA 4F0XA 5K3IA 3M9VA 4FZ4A 2GBBA 2CJ4A 2CJ8A 2PNRA 2VF1A 2BTZA 1SC5A 4HKSA 2ZDXA 1JQIA 1XFUA 3D9GA 1JM6A 2BU6A 2ZKJA 1SIQA 3AFEA 2Q8GA 2E80A 1RJ1A 3MPIA 3FCJA 4MPEA 4OO2A 4W9UA 3OWMA 2CJ7A 2HJNA 3UBRA 2PO4A 1K8TA 1X90A 4DOYA 2D29A 2DDHA 4M9AA 1Y8PA 2J7AA 3TZ5A 4Q4UA 2F6LA 3BNFA 1RJ4A 4MP7A 5K3HA 5M4MA 2XS8A 3Q23A 4FF1A 2REHA 1PI1A 2EBFX 4V25A 2OR0A 2BU2A 1RX0A 3PFDA 3TORA 2IX6A 1BUCA 2XS1A 4DZYA 3OWAA 2C0UA 1XFVA 4MPNA 2YYKA 3AFFA 4Q0TA 1XFZA 2R0NA 3VKHA 3VADA 1Y8OA 3C2PA 2YGWA 4AI6A 1IVHA 1SK6A 1EGDA 4LQQB 4RM7A 4AKHA 3Q22A 4P79A 2QR4A 5B5VA 2OEVA 3OIBA 1IS2A 1FS7A 2E81A 3D6BA 2BU8A 2Q8IA 1EGCA 1RP3A 4J1VA 4FF4A 4H81A 2RFQA 4Q5BA 1XG2B 2PG0A 3GQTA 4KSFA 3TTBA 4JIZA 1UKWA 2FONA 4E00A 1QDBA 1FS9A 5M4PA 1Y8NA 3C3LA 2JBSA 3EOMA 2Q8FA 3R7KA 4O5MA 4E01A 3MKHA 4L3XA 3CE2A 4V26A 4KS9A 4NXLA 2Z1QA 3HWCA 4WJYA 1FS8A 1LVCA 2FP1A 4FF2A 2UXWA 3F29A 2ZAFA 4X28A 4U83A 2JBTA 4N5FA 3CRLA 3D2RA 2JIFA 3CRKA 5J6AA 4G5EA 3EONA 2ZO5A 2FP2A 3II9A 3N0RA 3TZ0A 2ZDYA 3RKHA 1SIRA 2YYMA 2C12A 3MPJA 2CJ6A 2YYLA 4KSAA 4MP2A 5J71A 2BU5A 3GM6A 2R02A 3L1TA 4FF3A 3SF6A 3TZ2A 2EC5A 3MDEA 3Q24A 3X29A 5BRMA 2R03A 3BNGA 5B5WA 2WBIA 3FO3A 3D9DA 1GKZA 1R2JA
chains in the Genus database with same CATH topology
4FF4A 3C3LA 2AO2A 2PO4A 1K8TA 4G97A 1XFYA 5GJVE 4AKGA 1XFXA 2AZEA 3CE2A 3KMLA 4QICA 4FF2A 2F6LA 4KS9A 5GJWE 3Q23A 4FF1A 1LVCA 3VKGA 2FP1A 2EBFX 1PK0A 4AKIA 1Y0VA 2EBHX 1XFVA 1S26A 3VKHA 1XFZA 1XFWA 2FP2A 4F0XA 3N0RA 4FZ4A 2GBBA 2VF1A 3C2PA 2YGWA 4AI6A 4FF3A 4KSAA 1SK6A 4AKHA 1K93A 1SC5A 3Q22A 4HKSA 4P79A 2QR4A 2EC5A 3Q24A 3C46A 4HKRA 2LFWA 3X29A 1XFUA 1RP3A 4KSFA 1K90A 3Q0AA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LFW A;  3N0R A;  4G97 A;  1RP3 A;  4QIC A;  1SC5 A; 
#chains in the Genus database with same CATH topology
 4L3Z A;  1X91 A;  2BU7 A;  3MMO A;  2AO2 A;  1UDY A;  3LGQ A;  1GKX A;  4G97 A;  4MPC A;  5GJV E;  1GJV A;  4AKG A;  4IV6 A;  2AZE A;  4QIC A;  3VKG A;  4LQS B;  4H85 A;  3GNC A;  3SXQ A;  2OEX A;  1PK0 A;  2DVL A;  5M4N A;  1U8V A;  3UU9 A;  1T9G A;  3S7W A;  3B96 A;  1S26 A;  5B6B A;  3P4T A;  3SWO A;  1X8Z A;  4HR3 A;  2R05 A;  2XQR B;  4Q5C A;  3D1I A;  4Q17 A;  2OT4 A;  2JBR A;  4L1F A;  3X0X A;  2Q8H A;  3X0Y A;  1K93 A;  4H7Q A;  2RDZ A;  2VIG A;  4ZYJ A;  1R3B A;  3C46 A;  2YYI A;  4P13 A;  4HKR A;  1WS9 A;  2LFW A;  3D9E A;  2YYG A;  3SCE A;  3MDD A;  5K3J A;  4E02 A;  5BRK A;  2VR0 A;  3LG1 A;  1K90 A;  3D9F A;  3NF4 A;  4IRN A;  3TZ4 A;  3Q0A A;  2IX5 A;  2CJ5 A;  4Q1O A;  1W07 A;  1EGE A;  2EBA A;  1OAH A;  1XFY A;  2R0M A;  4JIO A;  1XFX A;  4XVX A;  5M4K A;  3KML A;  4X28 C;  5GJW E;  2RF7 A;  2E0A A;  4ZXV A;  3MXL A;  4KTO A;  2YYJ A;  4JEK A;  4AKI A;  4L38 A;  3BNH A;  4KCF A;  2OJQ A;  4L3Y A;  1Y0V A;  2EBH X;  2CX9 A;  2A1T A;  1GU6 A;  1XFW A;  5K3G A;  3BNJ A;  4F0X A;  5K3I A;  3M9V A;  4FZ4 A;  2GBB A;  2CJ4 A;  2CJ8 A;  2PNR A;  2VF1 A;  2BTZ A;  1SC5 A;  4HKS A;  2ZDX A;  1JQI A;  1XFU A;  3D9G A;  1JM6 A;  2BU6 A;  2ZKJ A;  1SIQ A;  3AFE A;  2Q8G A;  2E80 A;  1RJ1 A;  3MPI A;  3FCJ A;  4MPE A;  4OO2 A;  4W9U A;  3OWM A;  2CJ7 A;  2HJN A;  3UBR A;  2PO4 A;  1K8T A;  1X90 A;  4DOY A;  2D29 A;  2DDH A;  4M9A A;  1Y8P A;  2J7A A;  3TZ5 A;  4Q4U A;  2F6L A;  3BNF A;  1RJ4 A;  4MP7 A;  5K3H A;  5M4M A;  2XS8 A;  3Q23 A;  4FF1 A;  2REH A;  1PI1 A;  2EBF X;  4V25 A;  2OR0 A;  2BU2 A;  1RX0 A;  3PFD A;  3TOR A;  2IX6 A;  1BUC A;  2XS1 A;  4DZY A;  3OWA A;  2C0U A;  1XFV A;  4MPN A;  2YYK A;  3AFF A;  4Q0T A;  1XFZ A;  2R0N A;  3VKH A;  3VAD A;  1Y8O A;  3C2P A;  2YGW A;  4AI6 A;  1IVH A;  1SK6 A;  1EGD A;  4LQQ B;  4RM7 A;  4AKH A;  3Q22 A;  4P79 A;  2QR4 A;  5B5V A;  2OEV A;  3OIB A;  1IS2 A;  1FS7 A;  2E81 A;  3D6B A;  2BU8 A;  2Q8I A;  1EGC A;  1RP3 A;  4J1V A;  4FF4 A;  4H81 A;  2RFQ A;  4Q5B A;  1XG2 B;  2PG0 A;  3GQT A;  4KSF A;  3TTB A;  4JIZ A;  1UKW A;  2FON A;  4E00 A;  1QDB A;  1FS9 A;  5M4P A;  1Y8N A;  3C3L A;  2JBS A;  3EOM A;  2Q8F A;  3R7K A;  4O5M A;  4E01 A;  3MKH A;  4L3X A;  3CE2 A;  4V26 A;  4KS9 A;  4NXL A;  2Z1Q A;  3HWC A;  4WJY A;  1FS8 A;  1LVC A;  2FP1 A;  4FF2 A;  2UXW A;  3F29 A;  2ZAF A;  4X28 A;  4U83 A;  2JBT A;  4N5F A;  3CRL A;  3D2R A;  2JIF A;  3CRK A;  5J6A A;  4G5E A;  3EON A;  2ZO5 A;  2FP2 A;  3II9 A;  3N0R A;  3TZ0 A;  2ZDY A;  3RKH A;  1SIR A;  2YYM A;  2C12 A;  3MPJ A;  2CJ6 A;  2YYL A;  4KSA A;  4MP2 A;  5J71 A;  2BU5 A;  3GM6 A;  2R02 A;  3L1T A;  4FF3 A;  3SF6 A;  3TZ2 A;  2EC5 A;  3MDE A;  3Q24 A;  3X29 A;  5BRM A;  2R03 A;  3BNG A;  5B5W A;  2WBI A;  3FO3 A;  3D9D A;  1GKZ A;  1R2J A; 
#chains in the Genus database with same CATH homology
 4FF4 A;  3C3L A;  2AO2 A;  2PO4 A;  1K8T A;  4G97 A;  1XFY A;  5GJV E;  4AKG A;  1XFX A;  2AZE A;  3CE2 A;  3KML A;  4QIC A;  4FF2 A;  2F6L A;  4KS9 A;  5GJW E;  3Q23 A;  4FF1 A;  1LVC A;  3VKG A;  2FP1 A;  2EBF X;  1PK0 A;  4AKI A;  1Y0V A;  2EBH X;  1XFV A;  1S26 A;  3VKH A;  1XFZ A;  1XFW A;  2FP2 A;  4F0X A;  3N0R A;  4FZ4 A;  2GBB A;  2VF1 A;  3C2P A;  2YGW A;  4AI6 A;  4FF3 A;  4KSA A;  1SK6 A;  4AKH A;  1K93 A;  1SC5 A;  3Q22 A;  4HKS A;  4P79 A;  2QR4 A;  2EC5 A;  3Q24 A;  3C46 A;  4HKR A;  2LFW A;  3X29 A;  1XFU A;  1RP3 A;  4KSF A;  1K90 A;  3Q0A A; 
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