3KMLA

Circular permutant of the tobacco mosaic virus
Total Genus 42
204060801001201400510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
141
structure length
141
Chain Sequence
TRRVDDATVAIRCAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAGEGSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (17-36)TI3 (119-122)S1 (40-41)TII1 (37-40)TIV1 (58-61)S2 (53-55)AH2 (43-50)EMPTYTIV2 (66-69)AH4 (100-113)S3 (63-65)3H1 (69-75)S4 (79-80)AH3 (82-93)TI2 (96-99)TI4 (125-128)S5 (130-132)AH5 (137-149)TI5 (132-135)O1 (55-57)TI1 (14-17)Updating...
connected with : NaN
molecule tags Viral protein
source organism Tobacco mosaic virus
publication title Nanoscale protein assemblies from a circular permutant of the tobacco mosaic virus.
pubmed doi rcsb
molecule keywords Coat protein
total genus 42
structure length 141
sequence length 141
chains with identical sequence B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q
ec nomenclature
pdb deposition date 2009-11-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.140.190 Mainly Alpha Up-down Bundle Butyryl-CoA Dehydrogenase, subunit A; domain 3 Butyryl-CoA Dehydrogenase, subunit A; domain 3 3kmlA00
3KMLA
chains in the Genus database with same CATH superfamily
2E0AA 1X90A 2QR4A 2AO2A 2ZDYA 3BNHA 4KS9A 3SCEA 4ZYJA 2CJ6A 4L3YA 4Q0TA 2LFWA 1SK6A 4HKRA 3MKHA 4ZXVA 3EOMA 5K3IA 2CJ4A 1S26A 1XFZA 1Y8OA 4V25A 1GKXA 1XFXA 3D9FA 3C3LA 3SF6A 2R05A 4FF1A 4LQSB 2RF7A 3VKGA 1SC5A 3FCJA 2IX6A 4IRNA 1RJ1A 1WS9A 3AFEA 3VADA 1K8TA 3X0XA 5BRKA 1XFWA 1FS7A 1XG2B 1EGCA 4Q17A 4LQQB 5GJWE 2ZDXA 4L3ZA 1R3BA 2R0MA 3GQTA 2IX5A 2ZO5A 1JQIA 2EBAA 1JM6A 4L38A 4QICA 1FS9A 3AFFA 3NF4A 4G97A 3CE2A 3BNFA 4MPCA 3MPIA 1XFUA 3KMLA 3D6BA 4V26A 1BUCA 3BNJA 3UBRA 5M4MA 4FZ4A 1FS8A 2F6LA 2CJ8A 2Q8FA 3HWCA 4E00A 3SWOA 4WJYA 3S7WA 1OAHA 5B5WA 2YYKA 2YYLA 3TZ5A 2E80A 3Q22A 4F0XA 1X8ZA 2BU7A 2Z1QA 4JIZA 1UDYA 1PK0A 2FP2A 2RDZA 3C46A 4AI6A 3N0RA 3BNGA 2EBHX 5M4NA 1IVHA 5K3JA 3OWMA 2Q8IA 1QDBA 2XS8A 4FF2A 1EGDA 3CRKA 4H81A 4DOYA 1GJVA 4H7QA 2ZAFA 2FP1A 2CX9A 4N5FA 3II9A 4IV6A 3LG1A 1RX0A 2DDHA 3TZ0A 1T9GA 1W07A 4X28A 2J7AA 3PFDA 5B6BA 2JBRA 2HJNA 1XFVA 2R03A 4FF4A 1PI1A 3MDDA 1R2JA 3UU9A 3MDEA 1U8VA 4MPNA 4P79A 2CJ5A 1LVCA 2DVLA 2RFQA 2REHA 1RP3A 4U83A 1Y0VA 2BU5A 2JIFA 2YYIA 4MP2A 4L1FA 3VKHA 4XVXA 4RM7A 1XFYA 1IS2A 2CJ7A 2OJQA 3X0YA 2JBTA 4J1VA 4W9UA 1SIRA 4KCFA 4Q5CA 2VIGA 3D2RA 2Q8GA 4JIOA 3Q0AA 3X29A 3Q24A 2OEXA 3SXQA 4X28C 4E01A 3M9VA 4MP7A 2YYJA 2AZEA 3D9DA 3MXLA 2UXWA 5M4KA 2PNRA 2VF1A 3D9EA 3CRLA 5BRMA 3TTBA 3D1IA 4P13A 3TZ2A 4AKHA 2R0NA 2Q8HA 2BTZA 4JEKA 4KSFA 3B96A 2E81A 4NXLA 1X91A 4Q4UA 3GNCA 2OR0A 1SIQA 4L3XA 4E02A 4G5EA 2C0UA 2EC5A 4M9AA 1GKZA 2OT4A 2XS1A 3R7KA 4KSAA 3RKHA 1UKWA 1K90A 2EBFX 4AKIA 1Y8NA 4OO2A 2A1TA 2YGWA 3EONA 4KTOA 2YYGA 5GJVE 1GU6A 2WBIA 3GM6A 1EGEA 4Q5BA 3TZ4A 3C2PA 4Q1OA 2JBSA 2YYMA 2GBBA 3TORA 5J71A 3MMOA 4AKGA 3P4TA 3MPJA 2D29A 3OWAA 1Y8PA 2BU6A 4HR3A 4DZYA 5B5VA 5J6AA 1RJ4A 2FONA 3L1TA 3D9GA 1K93A 2BU8A 2OEVA 3FO3A 4H85A 5M4PA 4FF3A 4MPEA 3Q23A 4HKSA 2PO4A 5K3GA 2VR0A 2R02A 2XQRB 3F29A 3OIBA 2C12A 4O5MA 2BU2A 3LGQA 5K3HA 2PG0A 2ZKJA
chains in the Genus database with same CATH topology
2QR4A 4KS9A 2AO2A 4P79A 1LVCA 2EC5A 2F6LA 1RP3A 4FZ4A 1Y0VA 4KSAA 2EBFX 1K90A 1SK6A 2LFWA 4HKRA 3Q22A 4F0XA 3VKHA 4AKIA 1XFYA 1S26A 1XFZA 2YGWA 1PK0A 2FP2A 5GJVE 3C46A 1XFXA 4AI6A 3N0RA 3C3LA 3C2PA 3KMLA 2EBHX 4FF1A 3Q0AA 3X29A 2GBBA 3Q24A 4FF2A 4AKGA 3VKGA 1SC5A 2FP1A 2AZEA 1K8TA 1XFWA 1K93A 2VF1A 4FF3A 5GJWE 3Q23A 4HKSA 2PO4A 4QICA 4AKHA 4G97A 3CE2A 4KSFA 4FF4A 1XFVA 1XFUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KML A; 
#chains in the Genus database with same CATH topology
 2E0A A;  1X90 A;  2QR4 A;  2AO2 A;  2ZDY A;  3BNH A;  4KS9 A;  3SCE A;  4ZYJ A;  2CJ6 A;  4L3Y A;  4Q0T A;  2LFW A;  1SK6 A;  4HKR A;  3MKH A;  4ZXV A;  3EOM A;  5K3I A;  2CJ4 A;  1S26 A;  1XFZ A;  1Y8O A;  4V25 A;  1GKX A;  1XFX A;  3D9F A;  3C3L A;  3SF6 A;  2R05 A;  4FF1 A;  4LQS B;  2RF7 A;  3VKG A;  1SC5 A;  3FCJ A;  2IX6 A;  4IRN A;  1RJ1 A;  1WS9 A;  3AFE A;  3VAD A;  1K8T A;  3X0X A;  5BRK A;  1XFW A;  1FS7 A;  1XG2 B;  1EGC A;  4Q17 A;  4LQQ B;  5GJW E;  2ZDX A;  4L3Z A;  1R3B A;  2R0M A;  3GQT A;  2IX5 A;  2ZO5 A;  1JQI A;  2EBA A;  1JM6 A;  4L38 A;  4QIC A;  1FS9 A;  3AFF A;  3NF4 A;  4G97 A;  3CE2 A;  3BNF A;  4MPC A;  3MPI A;  1XFU A;  3KML A;  3D6B A;  4V26 A;  1BUC A;  3BNJ A;  3UBR A;  5M4M A;  4FZ4 A;  1FS8 A;  2F6L A;  2CJ8 A;  2Q8F A;  3HWC A;  4E00 A;  3SWO A;  4WJY A;  3S7W A;  1OAH A;  5B5W A;  2YYK A;  2YYL A;  3TZ5 A;  2E80 A;  3Q22 A;  4F0X A;  1X8Z A;  2BU7 A;  2Z1Q A;  4JIZ A;  1UDY A;  1PK0 A;  2FP2 A;  2RDZ A;  3C46 A;  4AI6 A;  3N0R A;  3BNG A;  2EBH X;  5M4N A;  1IVH A;  5K3J A;  3OWM A;  2Q8I A;  1QDB A;  2XS8 A;  4FF2 A;  1EGD A;  3CRK A;  4H81 A;  4DOY A;  1GJV A;  4H7Q A;  2ZAF A;  2FP1 A;  2CX9 A;  4N5F A;  3II9 A;  4IV6 A;  3LG1 A;  1RX0 A;  2DDH A;  3TZ0 A;  1T9G A;  1W07 A;  4X28 A;  2J7A A;  3PFD A;  5B6B A;  2JBR A;  2HJN A;  1XFV A;  2R03 A;  4FF4 A;  1PI1 A;  3MDD A;  1R2J A;  3UU9 A;  3MDE A;  1U8V A;  4MPN A;  4P79 A;  2CJ5 A;  1LVC A;  2DVL A;  2RFQ A;  2REH A;  1RP3 A;  4U83 A;  1Y0V A;  2BU5 A;  2JIF A;  2YYI A;  4MP2 A;  4L1F A;  3VKH A;  4XVX A;  4RM7 A;  1XFY A;  1IS2 A;  2CJ7 A;  2OJQ A;  3X0Y A;  2JBT A;  4J1V A;  4W9U A;  1SIR A;  4KCF A;  4Q5C A;  2VIG A;  3D2R A;  2Q8G A;  4JIO A;  3Q0A A;  3X29 A;  3Q24 A;  2OEX A;  3SXQ A;  4X28 C;  4E01 A;  3M9V A;  4MP7 A;  2YYJ A;  2AZE A;  3D9D A;  3MXL A;  2UXW A;  5M4K A;  2PNR A;  2VF1 A;  3D9E A;  3CRL A;  5BRM A;  3TTB A;  3D1I A;  4P13 A;  3TZ2 A;  4AKH A;  2R0N A;  2Q8H A;  2BTZ A;  4JEK A;  4KSF A;  3B96 A;  2E81 A;  4NXL A;  1X91 A;  4Q4U A;  3GNC A;  2OR0 A;  1SIQ A;  4L3X A;  4E02 A;  4G5E A;  2C0U A;  2EC5 A;  4M9A A;  1GKZ A;  2OT4 A;  2XS1 A;  3R7K A;  4KSA A;  3RKH A;  1UKW A;  1K90 A;  2EBF X;  4AKI A;  1Y8N A;  4OO2 A;  2A1T A;  2YGW A;  3EON A;  4KTO A;  2YYG A;  5GJV E;  1GU6 A;  2WBI A;  3GM6 A;  1EGE A;  4Q5B A;  3TZ4 A;  3C2P A;  4Q1O A;  2JBS A;  2YYM A;  2GBB A;  3TOR A;  5J71 A;  3MMO A;  4AKG A;  3P4T A;  3MPJ A;  2D29 A;  3OWA A;  1Y8P A;  2BU6 A;  4HR3 A;  4DZY A;  5B5V A;  5J6A A;  1RJ4 A;  2FON A;  3L1T A;  3D9G A;  1K93 A;  2BU8 A;  2OEV A;  3FO3 A;  4H85 A;  5M4P A;  4FF3 A;  4MPE A;  3Q23 A;  4HKS A;  2PO4 A;  5K3G A;  2VR0 A;  2R02 A;  2XQR B;  3F29 A;  3OIB A;  2C12 A;  4O5M A;  2BU2 A;  3LGQ A;  5K3H A;  2PG0 A;  2ZKJ A; 
#chains in the Genus database with same CATH homology
 2QR4 A;  4KS9 A;  2AO2 A;  4P79 A;  1LVC A;  2EC5 A;  2F6L A;  1RP3 A;  4FZ4 A;  1Y0V A;  4KSA A;  2EBF X;  1K90 A;  1SK6 A;  2LFW A;  4HKR A;  3Q22 A;  4F0X A;  3VKH A;  4AKI A;  1XFY A;  1S26 A;  1XFZ A;  2YGW A;  1PK0 A;  2FP2 A;  5GJV E;  3C46 A;  1XFX A;  4AI6 A;  3N0R A;  3C3L A;  3C2P A;  3KML A;  2EBH X;  4FF1 A;  3Q0A A;  3X29 A;  2GBB A;  3Q24 A;  4FF2 A;  4AKG A;  3VKG A;  1SC5 A;  2FP1 A;  2AZE A;  1K8T A;  1XFW A;  1K93 A;  2VF1 A;  4FF3 A;  5GJW E;  3Q23 A;  4HKS A;  2PO4 A;  4QIC A;  4AKH A;  4G97 A;  3CE2 A;  4KSF A;  4FF4 A;  1XFV A;  1XFU A; 
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similar chains in the pdb database (?% sequence similarity)

 
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