The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
172
|
structure length |
166
|
Chain Sequence |
LRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Seed Sequence-Matched Controls Reveal Limitations of Small Interfering RNA Knockdown in Functional and Structural Studies of Hepatitis C Virus NS5A-MOBKL1B Interaction.
pubmed doi rcsb |
| molecule tags |
Peptide binding protein/viral protein
|
| source organism |
Homo sapiens
|
| molecule keywords |
MOB kinase activator 1A
|
| total genus |
58
|
| structure length |
166
|
| sequence length |
172
|
| chains with identical sequence |
C
|
| ec nomenclature | |
| pdb deposition date | 2013-02-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03637 | Mob1_phocein | Mob1/phocein family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | MOB kinase activator |
#chains in the Genus database with same CATH superfamily 4LQS B; 4LQQ B; 5BRK A; 4J1V A; 5B5V A; 5BRM A; 5B5W A; 4JIZ A; 1R3B A; 5B6B A; 2HJN A; 1PI1 A; #chains in the Genus database with same CATH topology 1JQI A; 2FP1 A; 3BNJ A; 4XVX A; 3BNG A; 1XFZ A; 2BU2 A; 3L1T A; 3SCE A; 1XFW A; 2QR4 A; 3UBR A; 2E80 A; 4HKS A; 3B96 A; 2J7A A; 4JEK A; 4OO2 A; 3X0Y A; 4O5M A; 4L38 A; 1EGE A; 4FZ4 A; 4LQQ B; 5J6A A; 2Q8H A; 5BRK A; 4Q5B A; 4X28 A; 2PNR A; 5K3H A; 3X0X A; 3Q24 A; 2CJ6 A; 1Y8N A; 2YYJ A; 3TZ5 A; 3D9D A; 4Q17 A; 3TTB A; 2Z1Q A; 2CX9 A; 1EGD A; 3GQT A; 1T9G A; 4KTO A; 1SIQ A; 3MMO A; 3TZ4 A; 2C12 A; 4MPC A; 5B6B A; 3TOR A; 1K93 A; 1GKX A; 2ZKJ A; 4G97 A; 1XFU A; 4X28 C; 3Q22 A; 2YYI A; 2YYK A; 3N0R A; 2D29 A; 3CRL A; 4L1F A; 1GU6 A; 5GJW E; 2E81 A; 5K3J A; 1RJ4 A; 2DDH A; 2CJ8 A; 2ZDY A; 3FO3 A; 2PO4 A; 2EBA A; 2PG0 A; 4RM7 A; 3SF6 A; 2BU6 A; 2XS1 A; 3CE2 A; 2OJQ A; 4ZXV A; 4KSA A; 3D9E A; 2RDZ A; 2FP2 A; 1WS9 A; 2EC5 A; 2OEV A; 2XQR B; 1X90 A; 2YGW A; 4FF4 A; 2A1T A; 1RJ1 A; 3AFF A; 3AFE A; 4MP7 A; 1SC5 A; 1IS2 A; 4L3Z A; 2AO2 A; 2XS8 A; 3GM6 A; 4MPE A; 1S26 A; 2EBF X; 2LFW A; 2ZAF A; 4F0X A; 1PI1 A; 2RF7 A; 2BU5 A; 1Y8O A; 2JIF A; 4LQS B; 1QDB A; 2VF1 A; 5B5V A; 1FS9 A; 3R7K A; 3MPJ A; 2CJ4 A; 2FON A; 2Q8F A; 3VKH A; 2JBT A; 2UXW A; 3D9F A; 1XG2 B; 2IX5 A; 3C2P A; 3Q23 A; 2YYL A; 1UKW A; 4MPN A; 4DOY A; 3OWA A; 3BNF A; 5M4P A; 4AKG A; 4Q4U A; 3KML A; 4FF3 A; 2RFQ A; 4E00 A; 3II9 A; 4IV6 A; 4DZY A; 4M9A A; 1FS8 A; 2EBH X; 2OEX A; 3M9V A; 1LVC A; 5GJV E; 4Q0T A; 1IVH A; 3VAD A; 3X29 A; 1BUC A; 5BRM A; 2JBS A; 1R3B A; 3SXQ A; 4V25 A; 3GNC A; 1XFV A; 4WJY A; 3C3L A; 2R02 A; 3MPI A; 2BTZ A; 5K3I A; 4G5E A; 4N5F A; 5M4N A; 4E02 A; 3OWM A; 4QIC A; 2BU7 A; 4HR3 A; 2HJN A; 1EGC A; 4U83 A; 4KSF A; 3F29 A; 4AKI A; 2R0N A; 3MDE A; 3NF4 A; 3PFD A; 1SK6 A; 3OIB A; 2F6L A; 4H81 A; 4H85 A; 5M4M A; 3C46 A; 4JIO A; 1Y8P A; 2C0U A; 2IX6 A; 2R05 A; 3LG1 A; 5M4K A; 4AI6 A; 2YYG A; 2CJ5 A; 2GBB A; 4Q1O A; 2REH A; 3EON A; 4HKR A; 1XFY A; 1JM6 A; 3FCJ A; 1RP3 A; 4KS9 A; 4L3Y A; 1RX0 A; 3MKH A; 2Q8G A; 1XFX A; 2VR0 A; 3D2R A; 1GJV A; 1Y0V A; 1K90 A; 2E0A A; 4W9U A; 2ZO5 A; 4FF2 A; 1PK0 A; 4H7Q A; 4AKH A; 5J71 A; 2BU8 A; 2YYM A; 3BNH A; 3HWC A; 5K3G A; 1U8V A; 2VIG A; 4J1V A; 3MDD A; 3SWO A; 3D1I A; 4ZYJ A; 4L3X A; 1R2J A; 2AZE A; 4KCF A; 2DVL A; 1SIR A; 3S7W A; 3RKH A; 2JBR A; 4Q5C A; 4V26 A; 4IRN A; 1FS7 A; 1UDY A; 1X91 A; 1OAH A; 2R0M A; 3CRK A; 3LGQ A; 3MXL A; 4JIZ A; 2OT4 A; 1X8Z A; 1K8T A; 5B5W A; 3VKG A; 3D9G A; 3D6B A; 2Q8I A; 1W07 A; 4MP2 A; 4P13 A; 4E01 A; 2ZDX A; 4P79 A; 3UU9 A; 3TZ0 A; 3Q0A A; 2R03 A; 4NXL A; 3EOM A; 3TZ2 A; 1GKZ A; 2CJ7 A; 2OR0 A; 4FF1 A; 2WBI A; 3P4T A; #chains in the Genus database with same CATH homology 4LQS B; 4LQQ B; 5BRK A; 4J1V A; 5B5V A; 5BRM A; 5B5W A; 4JIZ A; 1R3B A; 5B6B A; 2HJN A; 1PI1 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
