4JIZ | Genus

Total Genus 53

Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	53
sequence length	172
structure length	172
Chain Sequence	NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__171281597538694__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__171281597538694__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4JIZ/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__171281597538694__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"171281597538694","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4JIZ/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__171281597538694__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Homo sapiens
publication title	Activation of the yeast Hippo pathway by phosphorylation-dependent assembly of signaling complexes. pubmed doi rcsb
molecule keywords	MOB kinase activator 1A
total genus	53
structure length	172
sequence length	172
ec nomenclature
pdb deposition date	2013-03-07

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.140.30	Mainly Alpha	Up-down Bundle	Butyryl-CoA Dehydrogenase, subunit A; domain 3	MOB kinase activator	4jizA00

4JIZA 1R3BA 5BRMA 4J1VA 2HJNA 4LQSB 5B5VA 5B6BA 5BRKA 1PI1A 5B5WA 4LQQB
chains in the Genus database with same CATH superfamily

2BU8A 2JBRA 4Q5CA 1GJVA 4E01A 4H7QA 1SIRA 2JIFA 5M4MA 1Y8PA 2CJ4A 1K93A 3B96A 4XVXA 4MPNA 3UU9A 4AKGA 3FCJA 1SK6A 1RX0A 2FP1A 2REHA 3MPIA 4G97A 4M9AA 4P13A 1SIQA 5GJWE 1RJ1A 5M4KA 2IX6A 2BU7A 2OEVA 2BU5A 1UDYA 2CJ6A 2IX5A 5BRKA 1FS7A 1UKWA 2R05A 1RP3A 5B5VA 3F29A 4JEKA 4KTOA 2C0UA 4O5MA 5GJVE 2JBSA 3TZ2A 3Q24A 4JIOA 2EBAA 4N5FA 1LVCA 2Q8FA 2XS8A 1WS9A 4Q4UA 4Q1OA 1X8ZA 4V26A 1EGDA 2DVLA 3TZ0A 5B5WA 4HKSA 3C3LA 2QR4A 1JM6A 3N0RA 3R7KA 4HKRA 5K3IA 2OJQA 3VKHA 2Z1QA 2J7AA 4WJYA 2LFWA 4E00A 3CRLA 2FP2A 4AKIA 1XFYA 2JBTA 4ZXVA 2RFQA 1T9GA 2CX9A 3TTBA 3X29A 5M4PA 2Q8IA 4H81A 4L1FA 2A1TA 1U8VA 2F6LA 5BRMA 3LGQA 2YYKA 3BNHA 4QICA 1XFUA 4LQSB 1IS2A 3C46A 3FO3A 4H85A 4L3ZA 1OAHA 2OT4A 1BUCA 3S7WA 2ZO5A 3SWOA 3GQTA 4FF4A 2ZAFA 4Q0TA 2PO4A 3HWCA 3PFDA 3VADA 4HR3A 3VKGA 3Q23A 4DZYA 1GU6A 2E80A 1X91A 4MPEA 2RF7A 1S26A 4RM7A 4OO2A 5M4NA 2EBHX 4AKHA 2ZDXA 1FS8A 2YYJA 3OWMA 2DDHA 2D29A 3TZ4A 3BNGA 2EC5A 5B6BA 4L38A 1PI1A 3EOMA 4IRNA 4AI6A 3MXLA 2YGWA 1PK0A 3GM6A 3UBRA 3LG1A 3C2PA 4FF1A 3X0XA 1X90A 1XFVA 2ZDYA 3D9EA 3II9A 5K3GA 4DOYA 3GNCA 1K8TA 3L1TA 3NF4A 4Q17A 4U83A 1XFWA 2CJ7A 2FONA 2ZKJA 2PNRA 2Q8GA 3D2RA 5K3HA 3M9VA 5K3JA 3TZ5A 3KMLA 1K90A 4G5EA 3MKHA 2GBBA 4X28A 3Q0AA 3Q22A 3OWAA 2PG0A 2RDZA 2XS1A 4FF2A 3MPJA 2AO2A 4Q5BA 2CJ8A 1XG2B 3BNJA 4ZYJA 1JQIA 4KSAA 4KCFA 3X0YA 4E02A 1R2JA 4W9UA 3CRKA 3SCEA 1EGEA 1IVHA 1SC5A 2OR0A 4J1VA 2R02A 2WBIA 2YYLA 4F0XA 3RKHA 1XFXA 3MDEA 2BU6A 4V25A 3SF6A 3MMOA 2E0AA 1Y0VA 2CJ5A 3AFEA 2UXWA 2VIGA 3CE2A 4FF3A 2YYMA 4X28C 2R0MA 2HJNA 1QDBA 2R0NA 2Q8HA 2XQRB 1FS9A 1RJ4A 3P4TA 3D9FA 4KSFA 3EONA 3D9GA 1Y8NA 3D6BA 2OEXA 4NXLA 5J71A 2EBFX 2AZEA 2E81A 4MPCA 2R03A 1EGCA 1R3BA 1Y8OA 3D1IA 4IV6A 4JIZA 2C12A 3MDDA 3OIBA 4MP7A 2BU2A 3AFFA 3BNFA 2YYGA 4LQQB 4FZ4A 1GKZA 1W07A 1GKXA 2BTZA 3TORA 2VR0A 3SXQA 1XFZA 2VF1A 4L3YA 2YYIA 4KS9A 4L3XA 4P79A 3D9DA 5J6AA 4MP2A
chains in the Genus database with same CATH topology

4JIZA 1R3BA 5BRMA 4J1VA 2HJNA 4LQSB 5B5VA 5B6BA 5BRKA 1PI1A 5B5WA 4LQQB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4JIZ A;  1R3B A;  5BRM A;  4J1V A;  2HJN A;  4LQS B;  5B5V A;  5B6B A;  5BRK A;  1PI1 A;  5B5W A;  4LQQ B; 
#chains in the Genus database with same CATH topology
 2BU8 A;  2JBR A;  4Q5C A;  1GJV A;  4E01 A;  4H7Q A;  1SIR A;  2JIF A;  5M4M A;  1Y8P A;  2CJ4 A;  1K93 A;  3B96 A;  4XVX A;  4MPN A;  3UU9 A;  4AKG A;  3FCJ A;  1SK6 A;  1RX0 A;  2FP1 A;  2REH A;  3MPI A;  4G97 A;  4M9A A;  4P13 A;  1SIQ A;  5GJW E;  1RJ1 A;  5M4K A;  2IX6 A;  2BU7 A;  2OEV A;  2BU5 A;  1UDY A;  2CJ6 A;  2IX5 A;  5BRK A;  1FS7 A;  1UKW A;  2R05 A;  1RP3 A;  5B5V A;  3F29 A;  4JEK A;  4KTO A;  2C0U A;  4O5M A;  5GJV E;  2JBS A;  3TZ2 A;  3Q24 A;  4JIO A;  2EBA A;  4N5F A;  1LVC A;  2Q8F A;  2XS8 A;  1WS9 A;  4Q4U A;  4Q1O A;  1X8Z A;  4V26 A;  1EGD A;  2DVL A;  3TZ0 A;  5B5W A;  4HKS A;  3C3L A;  2QR4 A;  1JM6 A;  3N0R A;  3R7K A;  4HKR A;  5K3I A;  2OJQ A;  3VKH A;  2Z1Q A;  2J7A A;  4WJY A;  2LFW A;  4E00 A;  3CRL A;  2FP2 A;  4AKI A;  1XFY A;  2JBT A;  4ZXV A;  2RFQ A;  1T9G A;  2CX9 A;  3TTB A;  3X29 A;  5M4P A;  2Q8I A;  4H81 A;  4L1F A;  2A1T A;  1U8V A;  2F6L A;  5BRM A;  3LGQ A;  2YYK A;  3BNH A;  4QIC A;  1XFU A;  4LQS B;  1IS2 A;  3C46 A;  3FO3 A;  4H85 A;  4L3Z A;  1OAH A;  2OT4 A;  1BUC A;  3S7W A;  2ZO5 A;  3SWO A;  3GQT A;  4FF4 A;  2ZAF A;  4Q0T A;  2PO4 A;  3HWC A;  3PFD A;  3VAD A;  4HR3 A;  3VKG A;  3Q23 A;  4DZY A;  1GU6 A;  2E80 A;  1X91 A;  4MPE A;  2RF7 A;  1S26 A;  4RM7 A;  4OO2 A;  5M4N A;  2EBH X;  4AKH A;  2ZDX A;  1FS8 A;  2YYJ A;  3OWM A;  2DDH A;  2D29 A;  3TZ4 A;  3BNG A;  2EC5 A;  5B6B A;  4L38 A;  1PI1 A;  3EOM A;  4IRN A;  4AI6 A;  3MXL A;  2YGW A;  1PK0 A;  3GM6 A;  3UBR A;  3LG1 A;  3C2P A;  4FF1 A;  3X0X A;  1X90 A;  1XFV A;  2ZDY A;  3D9E A;  3II9 A;  5K3G A;  4DOY A;  3GNC A;  1K8T A;  3L1T A;  3NF4 A;  4Q17 A;  4U83 A;  1XFW A;  2CJ7 A;  2FON A;  2ZKJ A;  2PNR A;  2Q8G A;  3D2R A;  5K3H A;  3M9V A;  5K3J A;  3TZ5 A;  3KML A;  1K90 A;  4G5E A;  3MKH A;  2GBB A;  4X28 A;  3Q0A A;  3Q22 A;  3OWA A;  2PG0 A;  2RDZ A;  2XS1 A;  4FF2 A;  3MPJ A;  2AO2 A;  4Q5B A;  2CJ8 A;  1XG2 B;  3BNJ A;  4ZYJ A;  1JQI A;  4KSA A;  4KCF A;  3X0Y A;  4E02 A;  1R2J A;  4W9U A;  3CRK A;  3SCE A;  1EGE A;  1IVH A;  1SC5 A;  2OR0 A;  4J1V A;  2R02 A;  2WBI A;  2YYL A;  4F0X A;  3RKH A;  1XFX A;  3MDE A;  2BU6 A;  4V25 A;  3SF6 A;  3MMO A;  2E0A A;  1Y0V A;  2CJ5 A;  3AFE A;  2UXW A;  2VIG A;  3CE2 A;  4FF3 A;  2YYM A;  4X28 C;  2R0M A;  2HJN A;  1QDB A;  2R0N A;  2Q8H A;  2XQR B;  1FS9 A;  1RJ4 A;  3P4T A;  3D9F A;  4KSF A;  3EON A;  3D9G A;  1Y8N A;  3D6B A;  2OEX A;  4NXL A;  5J71 A;  2EBF X;  2AZE A;  2E81 A;  4MPC A;  2R03 A;  1EGC A;  1R3B A;  1Y8O A;  3D1I A;  4IV6 A;  4JIZ A;  2C12 A;  3MDD A;  3OIB A;  4MP7 A;  2BU2 A;  3AFF A;  3BNF A;  2YYG A;  4LQQ B;  4FZ4 A;  1GKZ A;  1W07 A;  1GKX A;  2BTZ A;  3TOR A;  2VR0 A;  3SXQ A;  1XFZ A;  2VF1 A;  4L3Y A;  2YYI A;  4KS9 A;  4L3X A;  4P79 A;  3D9D A;  5J6A A;  4MP2 A; 
#chains in the Genus database with same CATH homology
 4JIZ A;  1R3B A;  5BRM A;  4J1V A;  2HJN A;  4LQS B;  5B5V A;  5B6B A;  5BRK A;  1PI1 A;  5B5W A;  4LQQ B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4JIZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN