The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
148
|
sequence length |
500
|
structure length |
482
|
Chain Sequence |
PESERQFREHVRKTRMIYDSLRMFLMMEEAKRRARADGKAGKAGSMMRDCMLWMNRDKRIVGSIPGVQVGDIFFFRFELCVMGLHGHPQSGIDFLTGSLSSNGEPIATSVIVSGGDVIMYTGQGGQDRLGRQAEHQRLEGGNLAMERSMYYGIEVRVIRGLKYENEVSSRVYVYDGLFRIVDSWFDVGKSGFGVFKYRLERIEGQAEMGSSVLKFARTLKTNPLSVRPRGYINFDISNGKENVPVYLFNDIDSDQEPLYYEYLAQTSFPPGLFGNASGCDCVNGCGSGCLCEAKNSGEIAYDYNGTLIRQKPLIHECGSACQCPPSCRNRVTQKGLRNRLEVFRSLETGWGVRSLDVLHAGAFICEYAGVALTREQANILTMNGDTLVYPARFSSARWEDWGDLSQVLADFERPSYPDIPPVDFAMDVSKMRNVACYISHSTDPNVIVQFVLHDHNSLMFPRVMLFAAENIPPMTELSLDYG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation.
pubmed doi rcsb |
| molecule tags |
Metal binding protein
|
| source organism |
Arabidopsis thaliana
|
| molecule keywords |
Probable histone-lysine N-methyltransferase, H3 lysine-9 spe
|
| total genus |
148
|
| structure length |
482
|
| sequence length |
500
|
| ec nomenclature |
ec
2.1.1.43: Histone-lysine N-methyltransferase. |
| pdb deposition date | 2013-11-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00856 | SET | SET domain |
| A | PF02182 | SAD_SRA | SAD/SRA domain |
| A | PF05033 | Pre-SET | Pre-SET motif |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | PUA domain-like | SRA-YDG | ||
| Mainly Beta | Beta Complex | Beta-clip-like | SET domain |
#chains in the Genus database with same CATH superfamily 2QPW A; 5JHN A; 3RQ4 A; 4MI0 A; 5KJM A; 2O8J A; 5ARG A; 4C1Q A; 1MT6 A; 2G46 A; 4NJ5 A; 2ZO1 B; 2ZO0 B; 3F9X A; 4E47 A; 3KMJ A; 1O9S A; 4BUP A; 2ZO2 B; 4PW7 A; 3OS5 A; 3CBM A; 5LSZ A; 5KJL A; 5F5E A; 3F9Y A; 5CPR B; 3KMA A; 3M56 A; 1N6A A; 3OLN A; 2PB7 A; 4RZ0 A; 5F6L A; 2ZKE A; 2JV0 A; 5JJ0 A; 3S7D A; 3VUZ A; 4O30 A; 3VV0 A; 4NVQ A; 3RU0 A; 3QWV A; 5AYF A; 4MI5 A; 3BO5 A; 5HI7 A; 5F59 A; 3M57 A; 3DB5 A; 5CCL A; 4JLG A; 2ZKD A; 3S7F A; 3F8I A; 2RFI A; 3M5A A; 5T0M A; 4QEP A; 3SW9 A; 3RAY A; 3TG4 A; 5CCM A; 4H12 A; 2ZKF A; 4YNM A; 4Z4P A; 1MUF A; 1XQH A; 3BI7 A; 1MVH A; 3F9W A; 4J8O A; 5KJK A; 4LDG A; 3QWW A; 3FDE A; 3M55 A; 4YPA A; 1PEG A; 4YPU A; 3RIB A; 5LSX A; 3CBP A; 3QWP A; 5TTF A; 2W5Z A; 3DAL A; 4FMU A; 4J7I A; 5F6K C; 3S7J A; 5ARF A; 5EG2 A; 3N71 A; 3MEK A; 4J7F A; 3F8J B; 1N6C A; 2BQZ A; 2F69 A; 4YNP A; 2IGQ A; 4WUY A; 3OPE A; 1ML9 A; 3M54 A; 5HQ8 A; 3EP0 A; 2R3A A; 3CLZ A; 3OXG A; 5EX0 A; 3M58 A; 4YPE A; 3CBO A; 1ZKK A; 4QEO A; 4O6F A; 5TH7 A; 4AU7 A; 4J83 A; 5KJN A; 3MO2 A; 3S7B A; 1N3J A; 5TEG A; 5JIY A; 3OXL A; 3S8P A; 5EX3 A; 2ZKG A; 5JIN A; 3DWH A; 3PDN A; 4JDS A; 3KMT A; 3FPD A; 3F9Z A; 3M59 A; 3MO5 A; 4IJ8 A; 3RJW A; 3TG5 A; 1MVX A; 3IHX A; 3SWC A; 3OXF A; 4PW5 A; 3MO0 A; 4IJD A; 3HNA A; 2W5Y A; 1H3I A; 3K5K A; 3OOI A; 5T0K A; 4YND A; 4I51 A; 4PW6 A; 5T5G A; 4QEN A; 3M53 A; #chains in the Genus database with same CATH topology 2QPW A; 5JHN A; 3RQ4 A; 4MI0 A; 5KJM A; 2O8J A; 5ARG A; 4C1Q A; 1MT6 A; 2G46 A; 4NJ5 A; 2ZO1 B; 2ZO0 B; 3F9X A; 4E47 A; 3KMJ A; 1O9S A; 4BUP A; 2ZO2 B; 4PW7 A; 3OS5 A; 3CBM A; 5LSZ A; 5KJL A; 5F5E A; 3F9Y A; 5CPR B; 3KMA A; 3M56 A; 1N6A A; 4F0Q A; 3OLN A; 2PB7 A; 4RZ0 A; 5F6L A; 2ZKE A; 2JV0 A; 5JJ0 A; 3S7D A; 3Q0F A; 4O30 A; 3VUZ A; 3VV0 A; 4NVQ A; 3RU0 A; 3QWV A; 5AYF A; 4MI5 A; 3BO5 A; 5HI7 A; 5F59 A; 3M57 A; 3DB5 A; 5CCL A; 4JLG A; 2ZKD A; 3S7F A; 3F8I A; 2RFI A; 3M5A A; 5T0M A; 4QEP A; 3SW9 A; 3RAY A; 3TG4 A; 4F0P A; 4H12 A; 5CCM A; 2ZKF A; 4YNM A; 4Z4P A; 1MUF A; 1XQH A; 3BI7 A; 3Q0D A; 1MVH A; 3F9W A; 4J8O A; 5KJK A; 4LDG A; 3QWW A; 3FDE A; 3M55 A; 4YPA A; 1PEG A; 4YPU A; 3RIB A; 5LSX A; 3CBP A; 3QWP A; 5TTF A; 2W5Z A; 3DAL A; 4FMU A; 4J7I A; 5F6K C; 4R28 A; 3S7J A; 5ARF A; 5EG2 A; 3N71 A; 3MEK A; 4J7F A; 3F8J B; 1N6C A; 2BQZ A; 2F69 A; 4YNP A; 2IGQ A; 4WUY A; 3OPE A; 1ML9 A; 3M54 A; 5HQ8 A; 3EP0 A; 4RZL A; 3CLZ A; 2R3A A; 3OXG A; 5EX0 A; 3M58 A; 4YPE A; 3CBO A; 1ZKK A; 4QEO A; 4O6F A; 5TH7 A; 4AU7 A; 4J83 A; 5KJN A; 3MO2 A; 3S7B A; 1N3J A; 5TEG A; 5JIY A; 3OXL A; 3S8P A; 5EX3 A; 2ZKG A; 5JIN A; 3DWH A; 3Q0C A; 3PDN A; 4JDS A; 3KMT A; 3FPD A; 3F9Z A; 3M59 A; 3MO5 A; 4IJ8 A; 3RJW A; 3TG5 A; 1MVX A; 3IHX A; 3SWC A; 3OXF A; 4YGI A; 4PW5 A; 3MO0 A; 4IJD A; 3HNA A; 2W5Y A; 1H3I A; 4OC8 A; 3K5K A; 3OOI A; 5T0K A; 4YND A; 4I51 A; 3Q0B X; 4PW6 A; 5T5G A; 4QEN A; 3M53 A; #chains in the Genus database with same CATH homology 2QPW A; 5JHN A; 3RQ4 A; 4MI0 A; 5KJM A; 2O8J A; 5ARG A; 4C1Q A; 1MT6 A; 2G46 A; 4NJ5 A; 2ZO1 B; 2ZO0 B; 3F9X A; 4E47 A; 3KMJ A; 1O9S A; 4BUP A; 2ZO2 B; 4PW7 A; 3OS5 A; 3CBM A; 5LSZ A; 5KJL A; 5F5E A; 3F9Y A; 5CPR B; 3KMA A; 3M56 A; 1N6A A; 3OLN A; 2PB7 A; 4RZ0 A; 5F6L A; 2ZKE A; 2JV0 A; 5JJ0 A; 3S7D A; 3VUZ A; 4O30 A; 3VV0 A; 4NVQ A; 3RU0 A; 3QWV A; 5AYF A; 4MI5 A; 3BO5 A; 5HI7 A; 5F59 A; 3M57 A; 3DB5 A; 5CCL A; 4JLG A; 2ZKD A; 3S7F A; 3F8I A; 2RFI A; 3M5A A; 5T0M A; 4QEP A; 3SW9 A; 3RAY A; 3TG4 A; 5CCM A; 4H12 A; 2ZKF A; 4YNM A; 4Z4P A; 1MUF A; 1XQH A; 3BI7 A; 1MVH A; 3F9W A; 4J8O A; 5KJK A; 4LDG A; 3QWW A; 3FDE A; 3M55 A; 4YPA A; 1PEG A; 4YPU A; 3RIB A; 5LSX A; 3CBP A; 3QWP A; 5TTF A; 2W5Z A; 3DAL A; 4FMU A; 4J7I A; 5F6K C; 3S7J A; 5ARF A; 5EG2 A; 3N71 A; 3MEK A; 4J7F A; 3F8J B; 1N6C A; 2BQZ A; 2F69 A; 4YNP A; 2IGQ A; 4WUY A; 3OPE A; 1ML9 A; 3M54 A; 5HQ8 A; 3EP0 A; 2R3A A; 3CLZ A; 3OXG A; 5EX0 A; 3M58 A; 4YPE A; 3CBO A; 1ZKK A; 4QEO A; 4O6F A; 5TH7 A; 4AU7 A; 4J83 A; 5KJN A; 3MO2 A; 3S7B A; 1N3J A; 5TEG A; 5JIY A; 3OXL A; 3S8P A; 5EX3 A; 2ZKG A; 5JIN A; 3DWH A; 3PDN A; 4JDS A; 3KMT A; 3FPD A; 3F9Z A; 3M59 A; 3MO5 A; 4IJ8 A; 3RJW A; 3TG5 A; 1MVX A; 3IHX A; 3SWC A; 3OXF A; 4PW5 A; 3MO0 A; 4IJD A; 3HNA A; 2W5Y A; 1H3I A; 3K5K A; 3OOI A; 5T0K A; 4YND A; 4I51 A; 4PW6 A; 5T5G A; 4QEN A; 3M53 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
