The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
170
|
sequence length |
510
|
structure length |
506
|
Chain Sequence |
TRPLTGEEYLESLRDAREVYLDGSRVKDVTAHPAFHNPARMTARLYDSLHDPAQKAVLTAPTDAGDGFTHRFFTAPRSVDDLVKDQAAIASWARKSYGWMGRSPDYKASFLGTLGANADFYEPFADNARRWYRESQEKVLYWNHAFLHPPVDRSEVGDVFIHVERETDAGLVVSGAKVVATGSALTHAAFISHWGLPIKDRKFALVATVPMDADGLKVICRPSYSANAATTGSPFDNPLSSRLDENDAILVLDQVLIPWENVFVYGNLGKVHLLAGQSGMIERATFHGCTRLAVKLEFIAGLLAKALDITGAKDFRGVQTRLGEVLAWRNLFWSLSDAAARNPVPWKNGTLLPNPQAGMAYRWFMQIGYPRVLEIVQQDVASGLMYVNSSTEDFRNPETGPYLEKYLRGSDGAGAVERVKVMKLLWDAVGSDFGGRHELYERNYSGNHENTRIELLLSQTASGKLDSYMDFAQACMDEYDLDGWTAPDLESFHAMRSASRDLLGGL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus.
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Streptomyces globisporus
|
| molecule keywords |
Chlorophenol-4-monooxygenase
|
| total genus |
170
|
| structure length |
506
|
| sequence length |
510
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2014-01-29 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03241 | HpaB | 4-hydroxyphenylacetate 3-hydroxylase C terminal |
| A | PF11794 | HpaB_N | 4-hydroxyphenylacetate 3-hydroxylase N terminal |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A, domain 3 |
#chains in the Genus database with same CATH superfamily 3SWO A; 3TTB A; 3MXL A; 2D29 A; 3UBR A; 1W07 A; 2VIG A; 3OWM A; 4IV6 A; 3D9G A; 3MMO A; 3MDE A; 4W9U A; 4JEK A; 4Q5B A; 3SCE A; 4Q0T A; 1QDB A; 2E81 A; 4L3Z A; 2WBI A; 4L3Y A; 2EBA A; 3P4T A; 3EOM A; 3BNJ A; 1OAH A; 1WS9 A; 1UKW A; 1IS2 A; 4KCF A; 3AFE A; 2JBS A; 3AFF A; 3X0Y A; 1FS7 A; 1R2J A; 2YYM A; 3FCJ A; 4ZXV A; 3B96 A; 3GQT A; 3LG1 A; 3GM6 A; 3FO3 A; 3OWA A; 4L3X A; 2PG0 A; 2IX6 A; 4M9A A; 1FS8 A; 1T9G A; 1FS9 A; 4Q17 A; 4IRN A; 2A1T A; 4X28 A; 3MDD A; 2JBT A; 2J7A A; 2YYL A; 1BUC A; 2Z1Q A; 2C0U A; 4XVX A; 3EON A; 2YYK A; 2OT4 A; 1EGE A; 3D9D A; 4NXL A; 2YYI A; 1GU6 A; 5K3H A; 2C12 A; 4Q5C A; 3SXQ A; 3HWC A; 2JBR A; 2JIF A; 3GNC A; 2RF7 A; 5K3G A; 2REH A; 4L38 A; 4HR3 A; 5K3I A; 3D9F A; 4RM7 A; 3D9E A; 4O5M A; 1RX0 A; 3S7W A; 2VR0 A; 4U83 A; 3M9V A; 3L1T A; 2ZAF A; 3PFD A; 1SIQ A; 4G5E A; 3RKH A; 2R0M A; 4OO2 A; 3BNG A; 4Q1O A; 3II9 A; 1U8V A; 3BNF A; 3UU9 A; 3R7K A; 2FON A; 3MPJ A; 2YYG A; 2OR0 A; 3X0X A; 3MKH A; 2DDH A; 3F29 A; 3NF4 A; 1EGD A; 2DVL A; 4ZYJ A; 4N5F A; 2RFQ A; 2CX9 A; 3LGQ A; 1EGC A; 3TOR A; 1JQI A; 2RDZ A; 4P13 A; 4WJY A; 3MPI A; 4DOY A; 3SF6 A; 2E80 A; 2UXW A; 4X28 C; 4Q4U A; 1IVH A; 2ZO5 A; 2IX5 A; 1UDY A; 2YYJ A; 2R0N A; 3BNH A; 3D1I A; 3D6B A; 4KTO A; 3OIB A; 5K3J A; 1SIR A; 4L1F A; #chains in the Genus database with same CATH topology 2Q8H A; 2XS1 A; 3SWO A; 2XQR B; 3TTB A; 4H7Q A; 2BU8 A; 3MXL A; 2CJ7 A; 2D29 A; 1K8T A; 2PNR A; 3UBR A; 1W07 A; 2VIG A; 1R3B A; 3VAD A; 5M4M A; 5M4P A; 2AO2 A; 2ZDX A; 3OWM A; 4IV6 A; 4E02 A; 3D9G A; 3MMO A; 3MDE A; 4W9U A; 4JEK A; 4Q5B A; 1X90 A; 2EBH X; 4G97 A; 1LVC A; 2OEX A; 3SCE A; 3VKH A; 2CJ8 A; 1QDB A; 2E81 A; 4L3Z A; 1Y8N A; 2WBI A; 4Q0T A; 4L3Y A; 5GJW E; 2EBA A; 3P4T A; 2EBF X; 3EOM A; 3Q22 A; 1SC5 A; 3Q23 A; 4FF4 A; 3BNJ A; 1OAH A; 1WS9 A; 1UKW A; 1IS2 A; 4H85 A; 4KCF A; 2PO4 A; 3AFE A; 2JBS A; 2Q8I A; 3AFF A; 3X0Y A; 1FS7 A; 1S26 A; 1R2J A; 2YYM A; 3FCJ A; 4ZXV A; 3B96 A; 2FP2 A; 3GQT A; 3GM6 A; 3FO3 A; 2R02 A; 3LG1 A; 2PG0 A; 2IX6 A; 3OWA A; 4L3X A; 4M9A A; 1FS8 A; 2YGW A; 3Q24 A; 1T9G A; 4E01 A; 1FS9 A; 3CRK A; 4Q17 A; 2XS8 A; 4IRN A; 1K93 A; 2A1T A; 4X28 A; 2Q8G A; 3D2R A; 2R03 A; 2JBT A; 3MDD A; 2J7A A; 5B6B A; 2YYL A; 4JIZ A; 1BUC A; 2Z1Q A; 2C0U A; 2ZKJ A; 5M4K A; 4XVX A; 3EON A; 2YYK A; 2OT4 A; 5BRM A; 4F0X A; 1EGE A; 3D9D A; 4KSF A; 4NXL A; 2YYI A; 1K90 A; 3KML A; 1GU6 A; 4MP2 A; 5K3H A; 3VKG A; 2C12 A; 4Q5C A; 3SXQ A; 1GKX A; 1XFW A; 3HWC A; 4H81 A; 2JBR A; 1XFV A; 2JIF A; 3N0R A; 1GKZ A; 3CE2 A; 3GNC A; 2RF7 A; 2AZE A; 5K3G A; 3C46 A; 2BU7 A; 2REH A; 4L38 A; 1GJV A; 4HR3 A; 5K3I A; 4J1V A; 3TZ5 A; 3CRL A; 3D9F A; 4KS9 A; 4RM7 A; 3D9E A; 4O5M A; 1RX0 A; 3S7W A; 3RKH A; 4V26 A; 2VR0 A; 4U83 A; 3M9V A; 2FP1 A; 2BU2 A; 2ZAF A; 1RJ1 A; 1SIQ A; 3L1T A; 2HJN A; 2E0A A; 2R0M A; 2EC5 A; 3PFD A; 3BNG A; 2CJ4 A; 4G5E A; 4OO2 A; 4Q1O A; 5J71 A; 4AKI A; 5GJV E; 3C3L A; 3II9 A; 4AKH A; 4MPE A; 1Y8P A; 4HKR A; 1U8V A; 3BNF A; 5J6A A; 4FF3 A; 1X8Z A; 3UU9 A; 2LFW A; 2OEV A; 4HKS A; 3TZ0 A; 2BTZ A; 3X29 A; 3R7K A; 2FON A; 2OJQ A; 1RJ4 A; 3MPJ A; 2YYG A; 4FF2 A; 2OR0 A; 3X0X A; 3MKH A; 5B5V A; 2BU5 A; 2DDH A; 5M4N A; 1XFX A; 4V25 A; 2Q8F A; 3F29 A; 3NF4 A; 2R05 A; 1X91 A; 4FZ4 A; 1EGD A; 4KSA A; 2DVL A; 1PI1 A; 4ZYJ A; 1SK6 A; 2RFQ A; 4N5F A; 4E00 A; 2CX9 A; 3LGQ A; 1XFZ A; 1EGC A; 1XFU A; 3TOR A; 2QR4 A; 3TZ2 A; 1XG2 B; 4FF1 A; 1JQI A; 4QIC A; 4MPN A; 2F6L A; 2RDZ A; 2ZDY A; 4JIO A; 4P13 A; 4WJY A; 2GBB A; 3MPI A; 4DOY A; 3SF6 A; 2E80 A; 2UXW A; 3Q0A A; 4MP7 A; 4X28 C; 3C2P A; 2VF1 A; 4Q4U A; 5BRK A; 1RP3 A; 1IVH A; 1JM6 A; 2ZO5 A; 4AKG A; 4LQS B; 5K3J A; 4AI6 A; 2IX5 A; 1UDY A; 1XFY A; 2YYJ A; 2R0N A; 4P79 A; 3BNH A; 3D1I A; 2BU6 A; 3D6B A; 4DZY A; 1PK0 A; 4KTO A; 4MPC A; 3TZ4 A; 2CJ6 A; 2CJ5 A; 3OIB A; 5B5W A; 1Y8O A; 4LQQ B; 1SIR A; 1Y0V A; 4L1F A; #chains in the Genus database with same CATH homology 3SWO A; 3TTB A; 3MXL A; 2D29 A; 3UBR A; 1W07 A; 2VIG A; 3OWM A; 4IV6 A; 3D9G A; 3MMO A; 3MDE A; 4W9U A; 4JEK A; 4Q5B A; 3SCE A; 4Q0T A; 1QDB A; 2E81 A; 4L3Z A; 2WBI A; 4L3Y A; 2EBA A; 3P4T A; 3EOM A; 3BNJ A; 1OAH A; 1WS9 A; 1UKW A; 1IS2 A; 4KCF A; 3AFE A; 2JBS A; 3AFF A; 3X0Y A; 1FS7 A; 1R2J A; 2YYM A; 3FCJ A; 4ZXV A; 3B96 A; 3GQT A; 3LG1 A; 3GM6 A; 3FO3 A; 3OWA A; 4L3X A; 2PG0 A; 2IX6 A; 4M9A A; 1FS8 A; 1T9G A; 1FS9 A; 4Q17 A; 4IRN A; 2A1T A; 4X28 A; 3MDD A; 2JBT A; 2J7A A; 2YYL A; 1BUC A; 2Z1Q A; 2C0U A; 4XVX A; 3EON A; 2YYK A; 2OT4 A; 1EGE A; 3D9D A; 4NXL A; 2YYI A; 1GU6 A; 5K3H A; 2C12 A; 4Q5C A; 3SXQ A; 3HWC A; 2JBR A; 2JIF A; 3GNC A; 2RF7 A; 5K3G A; 2REH A; 4L38 A; 4HR3 A; 5K3I A; 3D9F A; 4RM7 A; 3D9E A; 4O5M A; 1RX0 A; 3S7W A; 2VR0 A; 4U83 A; 3M9V A; 3L1T A; 2ZAF A; 3PFD A; 1SIQ A; 4G5E A; 3RKH A; 2R0M A; 4OO2 A; 3BNG A; 4Q1O A; 3II9 A; 1U8V A; 3BNF A; 3UU9 A; 3R7K A; 2FON A; 3MPJ A; 2YYG A; 2OR0 A; 3X0X A; 3MKH A; 2DDH A; 3F29 A; 3NF4 A; 1EGD A; 2DVL A; 4ZYJ A; 4N5F A; 2RFQ A; 2CX9 A; 3LGQ A; 1EGC A; 3TOR A; 1JQI A; 2RDZ A; 4P13 A; 4WJY A; 3MPI A; 4DOY A; 3SF6 A; 2E80 A; 2UXW A; 4X28 C; 4Q4U A; 1IVH A; 2ZO5 A; 2IX5 A; 1UDY A; 2YYJ A; 2R0N A; 3BNH A; 3D1I A; 3D6B A; 4KTO A; 3OIB A; 5K3J A; 1SIR A; 4L1F A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
