The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
45
|
sequence length |
216
|
structure length |
166
|
Chain Sequence |
MSPTEAPKVRVTLFCILVGIVLAMTAVVSDHWAVLSPHCEAAHFGLWRICTKRGEKNCSYFSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMIEYYYSWSFACACAAFVLLFLGGISLLLFSLPRMPQNPWESCM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Membrane protein
|
| source organism |
Oryctolagus cuniculus
|
| publication title |
Structure of the voltage-gated calcium channel Cav1.1 at 3.6 angstrom resolution
pubmed doi rcsb |
| molecule keywords |
Voltage-dependent L-type calcium channel subunit alpha-1S
|
| total genus |
45
|
| structure length |
166
|
| sequence length |
216
|
| ec nomenclature | |
| pdb deposition date | 2016-07-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| E | PF13903 | Claudin_2 | PMP-22/EMP/MP20/Claudin tight junction |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | Butyryl-CoA Dehydrogenase, subunit A; domain 3 | Butyryl-CoA Dehydrogenase, subunit A; domain 3 |
#chains in the Genus database with same CATH superfamily 3X29 A; 5GJW E; 4P79 A; 5GJV E; #chains in the Genus database with same CATH topology 1SIR A; 2Z1Q A; 2HJN A; 1W07 A; 2R0M A; 3OIB A; 3TZ0 A; 2JIF A; 4MP2 A; 3PFD A; 5M4M A; 5B5W A; 2CX9 A; 3OWA A; 3Q23 A; 3D2R A; 3SF6 A; 4U83 A; 2BU8 A; 4AKH A; 4Q5B A; 4G97 A; 4HR3 A; 3UU9 A; 5B6B A; 2ZKJ A; 1XFY A; 2Q8G A; 3LG1 A; 1XFX A; 3D9G A; 4KTO A; 5GJW E; 3S7W A; 1QDB A; 5J71 A; 2RF7 A; 1FS9 A; 2BU6 A; 2PO4 A; 3D9F A; 3P4T A; 2QR4 A; 4ZYJ A; 4IRN A; 4Q17 A; 2DDH A; 2XS1 A; 1XFV A; 1RX0 A; 3CRK A; 1XG2 B; 2OEV A; 3BNF A; 2XQR B; 1Y8N A; 2RDZ A; 2ZDY A; 2CJ7 A; 4JIZ A; 4FF3 A; 2ZAF A; 4P13 A; 4H85 A; 5BRM A; 3TTB A; 1SK6 A; 1Y8O A; 4DOY A; 1RJ4 A; 3EOM A; 2Q8I A; 1GKX A; 2CJ4 A; 3GNC A; 3B96 A; 5J6A A; 3LGQ A; 2E80 A; 3D6B A; 4P79 A; 1EGD A; 1SC5 A; 2OR0 A; 2VR0 A; 2C12 A; 2WBI A; 3BNG A; 2YYK A; 3X0Y A; 3C46 A; 3VKG A; 1XFZ A; 4Q1O A; 3SCE A; 4MP7 A; 4Q5C A; 1OAH A; 4V26 A; 1PK0 A; 2JBT A; 4QIC A; 3MDD A; 1XFW A; 4MPC A; 2IX6 A; 1RP3 A; 2E0A A; 2R03 A; 3MPJ A; 3F29 A; 5M4N A; 2CJ8 A; 4AI6 A; 4NXL A; 3MXL A; 1EGC A; 2YGW A; 4XVX A; 2OT4 A; 2FP1 A; 2YYG A; 3RKH A; 1U8V A; 4X28 A; 1S26 A; 2GBB A; 4KSA A; 1LVC A; 4E01 A; 2RFQ A; 3Q22 A; 1JM6 A; 4LQS B; 4M9A A; 1RJ1 A; 3TZ5 A; 3C3L A; 3KML A; 1Y8P A; 2E81 A; 3BNJ A; 3D1I A; 3II9 A; 3VAD A; 4FF1 A; 3VKH A; 4Q4U A; 4L3X A; 1FS7 A; 4L3Z A; 4H81 A; 4KCF A; 5B5V A; 4OO2 A; 1BUC A; 1UKW A; 2VIG A; 3N0R A; 4H7Q A; 3X0X A; 1T9G A; 3FCJ A; 1EGE A; 1GKZ A; 3CRL A; 4E00 A; 1JQI A; 2R0N A; 2YYM A; 5GJV E; 3D9E A; 4IV6 A; 3EON A; 4L3Y A; 1X8Z A; 3UBR A; 2J7A A; 4FF4 A; 2BU2 A; 1K90 A; 2YYI A; 4KS9 A; 1Y0V A; 4KSF A; 3C2P A; 1SIQ A; 5BRK A; 1WS9 A; 2PNR A; 3AFF A; 4MPN A; 5K3J A; 3Q24 A; 2FP2 A; 3D9D A; 2Q8F A; 5M4P A; 2CJ6 A; 2ZO5 A; 5K3G A; 4F0X A; 2BU7 A; 4AKG A; 4J1V A; 1GJV A; 1UDY A; 3GM6 A; 2EBA A; 3MPI A; 3SWO A; 3M9V A; 3TZ2 A; 2PG0 A; 2IX5 A; 3SXQ A; 2OEX A; 1X90 A; 2UXW A; 4W9U A; 4DZY A; 3OWM A; 4JIO A; 1XFU A; 3NF4 A; 1PI1 A; 2YYJ A; 2BU5 A; 2Q8H A; 3TZ4 A; 2EBH X; 3Q0A A; 3CE2 A; 4ZXV A; 4X28 C; 4WJY A; 4FZ4 A; 4RM7 A; 2F6L A; 3AFE A; 2LFW A; 3HWC A; 3X29 A; 4L38 A; 2FON A; 2REH A; 4O5M A; 1IS2 A; 4V25 A; 2XS8 A; 2ZDX A; 2BTZ A; 3MDE A; 2EC5 A; 4LQQ B; 2D29 A; 4MPE A; 3L1T A; 2AZE A; 1R2J A; 1R3B A; 3R7K A; 3BNH A; 1K93 A; 1FS8 A; 3GQT A; 3FO3 A; 4E02 A; 2A1T A; 1IVH A; 2AO2 A; 2VF1 A; 4G5E A; 5K3I A; 2YYL A; 3MKH A; 1GU6 A; 2DVL A; 5K3H A; 2JBR A; 5M4K A; 4FF2 A; 4JEK A; 4HKR A; 3TOR A; 2R02 A; 4N5F A; 2EBF X; 1X91 A; 3MMO A; 1K8T A; 2CJ5 A; 2JBS A; 2OJQ A; 2C0U A; 2R05 A; 4HKS A; 4Q0T A; 4L1F A; 4AKI A; #chains in the Genus database with same CATH homology 3Q0A A; 1SC5 A; 3N0R A; 2EBH X; 3CE2 A; 3C46 A; 3VKG A; 1XFZ A; 4FZ4 A; 3Q23 A; 2F6L A; 5GJV E; 2LFW A; 3X29 A; 4AKH A; 1PK0 A; 4G97 A; 4QIC A; 4FF4 A; 1XFY A; 1XFX A; 1XFW A; 5GJW E; 1K90 A; 1RP3 A; 4KS9 A; 2EC5 A; 2PO4 A; 1Y0V A; 2QR4 A; 4P79 A; 2AZE A; 4KSF A; 3Q24 A; 3C2P A; 4AI6 A; 2YGW A; 1K93 A; 1XFV A; 2FP2 A; 2FP1 A; 2AO2 A; 2VF1 A; 4F0X A; 4FF3 A; 4AKG A; 1S26 A; 2GBB A; 4KSA A; 1LVC A; 3Q22 A; 3C3L A; 3KML A; 1SK6 A; 4FF2 A; 4HKR A; 3VKH A; 2EBF X; 4FF1 A; 1K8T A; 4HKS A; 1XFU A; 4AKI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
