1WP5A

Crystal structure of the c-terminal domain of dna topoisomerase iv
Total Genus 82
5010015020025030001020304050607080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
323
structure length
323
Chain Sequence
MVASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTEKLAAALEHHHH

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (310-322)EMPTYS1 (7-12)TI1 (12-15)TI2 (36-39)S2 (16-21)TI5 (74-77)TI12 (256-259)S3 (41-43)S5 (61-66)TI3 (48-51)TI4 (57-60)S4 (52-57)TIV3 (141-144)TVIII2 (131-134)S9 (119-122)TIV2 (128-131)3H3 (123-126)S6 (80-81)3H2 (82-84)TVIII1 (84-87)S7 (94-100)TIV1 (100-103)S11 (146-152)TI7 (102-105)TI8 (113-116)S8 (108-113)S10 (135-136)S12 (157-162)TII2 (230-233)S13 (166-171)TI9 (162-165)3H5 (223-225)TII1 (191-194)TIV4 (243-246)S14 (196-202)TVIII4 (242-245)S15 (208-213)S17 (236-237)3H6 (275-277)S18 (249-255)TI13 (265-268)S16 (217-219)TIV5 (282-285)TIV7 (293-296)TI14 (294-297)TIV6 (292-295)S21 (288-289)S19 (260-265)S20 (270-274)TI6 (89-92)AH1 (22-28)TI'1 (28-31)TVIII3 (179-182)TI10 (204-207)TI11 (213-216)3H1 (67-69)3H4 (172-174)S22 (299-305)TVIII5 (306-309)Updating...
connected with : NaN
molecule tags Isomerase
source organism Geobacillus stearothermophilus
publication title Structure of the topoisomerase IV C-terminal domain: a broken beta-propeller implies a role as geometry facilitator in catalysis
pubmed doi rcsb
molecule keywords topoisomerase IV
total genus 82
structure length 323
sequence length 323
ec nomenclature ec 5.99.1.-:
pdb deposition date 2004-08-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.120.10.90 Mainly Beta 6 Propeller Neuraminidase DNA gyrase/topoisomerase IV, subunit A, C-terminal 1wp5A00
3NO0A 4G3NA 3L6VA 3UC1A 1SUUA 1ZI0A 1WP5A
chains in the Genus database with same CATH superfamily
1EURA 2FP9A 2HTRA 1L7HA 2H2NA 4GDJA 4BBWA 2YDTA 2XN4A 2IAQA 2IATA 1IVFA 4HZWA 1SLLA 2GHSA 1A14N 2VK6A 1X2RA 2XCYA 4M3MA 3NO0A 4X6KA 1PJXA 2OJHA 4GB1A 3Q6TA 4B7JA 4XJUA 1INXA 4CHBA 1W21A 2GVXA 2IAOA 4B7RA 2VW0A 5D9BA 5HUKA 4YW2A 3ALXA 2QWGA 2IARA 2DSOA 1Z4XA 4HHQA 2VWDA 2HQSA 1MR5A 1WP5A 3VNGA 1Z4ZA 4FOQA 4MZEA 2QWIA 1ZI0A 2F10A 3PJQA 1INHA 4X47A 4CPNA 5GX2A 4XIKA 3FW0A 1NNBA 1IUCA 5GX5A 1SNTA 2YA4A 4XJ9A 1C9UA 1XOGA 5CGJA 3TI3A 2Z32A 2ZB6A 2VSKA 3TIAA 3OPZA 3K39A 1OFZA 3O9JA 2DYHA 3O9KA 1N1YA 5HUMA 1V0EA 1IUBA 3NN9A 3U0SA 2C4AA 2VK7A 2ZW9A 4K1KA 2HT5A 4A0PA 3H73A 3T1EA 4WA4A 2YA8A 1Z4WA 1MS9A 1B9SA 3K38A 1F8EA 4FOWA 3II7A 5F72C 2W8BA 3SOBB 3UC1A 3SILA 3V65B 1INFA 1KITA 1USRA 2QWBA 4XHXA 4YW4A 1V2IA 4GNBA 4FP3A 4L7BA 3CKZA 4HZVA 3KYAA 2C4LA 1QLGA 3A72A 4ZLRA 1RWLA 4UOUA 4FPHA 2FPCA 1IJQA 1CVMA 4IN4A 1EUUA 2HU4A 4YW3A 1NMCA 5HUGA 4X4AA 6NN9A 4B7NA 5EO7A 5FNQA 1IVEA 4GZPA 2F25A 4MWRA 3A71A 1NPEA 3INBA 2FLUX 3LI3A 1Z50A 2GVVA 4MJUA 4JMLA 4HW6A 2W8BB 1CQ1A 3WN7A 1CRUA 1V3EA 4K1IA 4IYGA 2DG1A 2F11A 2VW2A 2V91A 5B2CA 2ZB5A 4MWUA 4D8SA 1C5KA 1V3DA 2W20A 2HTWA 2HT7A 3S8VA 5FNRA 4XMBA 3SLIA 4XOGA 1E8VA 4D52A 4GZOA 2YA7A 2HTUA 1CRZA 1H6LA 2QWEA 5GX3A 4HZZA 1SUUA 5FNTA 3SALA 4CSDA 4FVKA 4MWQA 4KS4A 5FZJA 3ADEA 2VVZA 4GZWA 2F24A 1DILA 3B7EA 1N1VA 4XJWA 4D4UA 3I1CA 4KS1A 1F8BA 4FP2A 1N6EA 1POOA 2WOZA 3K37A 2BF6A 3IAXA 2SILA 1E8UA 1IVDA 3ALWA 3P5BL 1IVBA 4GEZA 4YZ4A 5B2DA 1L7GA 2HU0A 2QWKA 3G4EA 3S94A 2F28A 3HLHA 4GZXA 2F13A 2IAUA 2QWDA 4R40A 5GX1A 4AHAA 1MS4A 4D52B 4CPZA 1Q7FA 1F8DA 1W0PA 4CPMA 4SLIA 2IAWA 4GN8A 1IVGA 2XZJA 4KS2A 4YY8A 3TI5A 4MWWA 3H71A 4Q1UA 4GDIA 3A9HA 2POOA 3Q6KA 1B9VA 1V3BA 1W8OA 4FPOB 3TI4A 3SREA 2ZZKA 1F8CA 2FHRA 1NSBA 1USXA 3AMSA 2XZKA 4ZY3A 1X2JA 2F0ZA 4FQ4A 4IFNX 1Z4YA 3CYEA 3SRGA 4YZ1A 1MWEA 1NSCA 2AEQA 2AGSA 2VAQA 4CPLA 4L7DA 1NN2A 1NNAA 4J9TA 3CL0A 2QWAA 4FPEA 4FPKA 2ZWAA 4C1YA 1W0OA 2F12A 1INVA 1IVCA 4ZGCA 2QWJA 2AEPA 3W09A 4AH4A 3HLIA 2SLIA 5H47A 1EUTA 4MX0A 4D52C 2JKBA 3TC9A 3O4PA 4MJVA 3DR2A 2IASA 2W5NA 4FOVA 2IAXA 5F9TA 2GVUA 2IAPA 1MZ5A 4NN9A 4NC5A 4O5TA 4QNPA 4XJAA 3TICA 1NCDN 5GX4A 4WA3A 1N1SA 2FPBA 4GZQA 3V1SA 4MWLA 1INGA 4CPOA 3ZGDA 4IFLX 7NN9A 5D9DA 3GVKA 1U6DX 5EX7A 4MWYA 1RWIA 2VK5A 4Q6KA 4YZ2A 5HX0A 4K1JA 4XMAA 3L6VA 1MZ6A 1Z4VA 2HTVA 5FWWA 2IAVA 5FNUA 2X9MA 2FP8A 3H72A 3VNHA 4WEGA 3TI8A 1NCBN 4HIZA 1NMAN 4MZAA 4CH9A 4QN7A 4MC7A 1NSDA 4L7CA 4XJQA 1N6DA 3GVLA 2VW1A 1DIMA 4GZSA 1V04A 2AH2A 4M4VA 4GNCA 1W8NA 1A4GA 2CMLA 3E5ZA 4XJRA 3GVJA 4H53A 4YW5A 4H52A 4X49A 4XIOA 1N7DA 3D12A 1NCAN 2QWHA 5M1ZA 1NNCA 4AGIA 4FZHA 4DGRA 1INYA 2QWFA 1WCSA 4FPYA 2HTYA 1XOEA 4FOYA 2W38A 2F29A 4FPCA 2SIMA 4AGTA 4IMBA 4MWVA 3SANA 4I00A 4XHBA 1W20A 2BERA 1K32A 4HZXA 5JYYA 3JU4A 1V0FA 4QN5A 1INWA 2G8SA 4FPJA 4XE9A 4XYXA 2F27A 3BEQA 2P4OA 2YA5A 1ZGKA 5GTQA 2RKCA 4MWXA 4YZ3A 5HUNA 1MS1A 3LI4A 1N1TA 2VPJA 4K3YA 4CPYA 4KS5A 2QWCA 4B7MA 1QBIA 1E1AA 1VCUA 4GZTA 4N1BA 4YZ5A 3SOVA 1MS5A 4K1HA 4WEFA 4GJTA 4M4NA 1L7FA 4O5SA 4FPLA 2H2UA 3HRPA 2W5OA 4FPFA 1MS8A 1WCQA 1S0IA 3V64C 1MS0A 2HTQA 1BJIA 2XZIA 3SOQA 3Q6PA 3CL2A 4M4UA 3NSSA 2BZDA 1S18A 4QN6A 1E8TA 2DG0A 4FPGA 4MWJA 4ASCA 2QE8A 1NCCN 3DASA 3AMRA 4HZYA 3FVZA 3TI6A 4HHOA 2B8HA 1S0JA 5EO8A 4YW1A 1NMBN 3WWAA 3ZGCA 4XJZA 4DG6A 4C1YB 1EUSA 4IQKA 3S8ZA 2F26A 4QN4A 4QN3A 4GNAA 5FZNA 3G4HA 1SO7A 4WA5A 4IFJA 5FNSA 4JF7A 3TIBA 2HT8A 4XJ8A 3B69A 2ISMA 4NCSA 1W1XA 4XMIA 3WW9A 3LI5A 3BYCA 3D11A 3K3AA 1B9TA 2YDPA 3K36A 4FJ6A 5D9CA 1V3CA 2VSMA 4KS3A 4PWZA 1S1DA 3KGGA 4GN7A 1VCJA 4XILA 2YA6A 5NN9A 1MS3A 1V0ZA 4G3NA 1A4QA 2A75A 4B7QA 2IVZA 3WDZA 1SLIA 4UF7A 3H6JA 4GN9A 3A9GA 1N6FA 3S2KA 2BATA 2GVWA
chains in the Genus database with same CATH topology
3NO0A 4G3NA 3L6VA 3UC1A 1SUUA 1ZI0A 1WP5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NO0 A;  4G3N A;  3L6V A;  3UC1 A;  1SUU A;  1ZI0 A;  1WP5 A; 
#chains in the Genus database with same CATH topology
 1EUR A;  2FP9 A;  2HTR A;  1L7H A;  2H2N A;  4GDJ A;  4BBW A;  2YDT A;  2XN4 A;  2IAQ A;  2IAT A;  1IVF A;  4HZW A;  1SLL A;  2GHS A;  1A14 N;  2VK6 A;  1X2R A;  2XCY A;  4M3M A;  3NO0 A;  4X6K A;  1PJX A;  2OJH A;  4GB1 A;  3Q6T A;  4B7J A;  4XJU A;  1INX A;  4CHB A;  1W21 A;  2GVX A;  2IAO A;  4B7R A;  2VW0 A;  5D9B A;  5HUK A;  4YW2 A;  3ALX A;  2QWG A;  2IAR A;  2DSO A;  1Z4X A;  4HHQ A;  2VWD A;  2HQS A;  1MR5 A;  1WP5 A;  3VNG A;  1Z4Z A;  4FOQ A;  4MZE A;  2QWI A;  1ZI0 A;  2F10 A;  3PJQ A;  1INH A;  4X47 A;  4CPN A;  5GX2 A;  4XIK A;  3FW0 A;  1NNB A;  1IUC A;  5GX5 A;  1SNT A;  2YA4 A;  4XJ9 A;  1C9U A;  1XOG A;  5CGJ A;  3TI3 A;  2Z32 A;  2ZB6 A;  2VSK A;  3TIA A;  3OPZ A;  3K39 A;  1OFZ A;  3O9J A;  2DYH A;  3O9K A;  1N1Y A;  5HUM A;  1V0E A;  1IUB A;  3NN9 A;  3U0S A;  2C4A A;  2VK7 A;  2ZW9 A;  4K1K A;  2HT5 A;  4A0P A;  3H73 A;  3T1E A;  4WA4 A;  2YA8 A;  1Z4W A;  1MS9 A;  1B9S A;  3K38 A;  1F8E A;  4FOW A;  3II7 A;  5F72 C;  2W8B A;  3SOB B;  3UC1 A;  3SIL A;  3V65 B;  1INF A;  1KIT A;  1USR A;  2QWB A;  4XHX A;  4YW4 A;  1V2I A;  4GNB A;  4FP3 A;  4L7B A;  3CKZ A;  4HZV A;  3KYA A;  2C4L A;  1QLG A;  3A72 A;  4ZLR A;  1RWL A;  4UOU A;  4FPH A;  2FPC A;  1IJQ A;  1CVM A;  4IN4 A;  1EUU A;  2HU4 A;  4YW3 A;  1NMC A;  5HUG A;  4X4A A;  6NN9 A;  4B7N A;  5EO7 A;  5FNQ A;  1IVE A;  4GZP A;  2F25 A;  4MWR A;  3A71 A;  1NPE A;  3INB A;  2FLU X;  3LI3 A;  1Z50 A;  2GVV A;  4MJU A;  4JML A;  4HW6 A;  2W8B B;  1CQ1 A;  3WN7 A;  1CRU A;  1V3E A;  4K1I A;  4IYG A;  2DG1 A;  2F11 A;  2VW2 A;  2V91 A;  5B2C A;  2ZB5 A;  4MWU A;  4D8S A;  1C5K A;  1V3D A;  2W20 A;  2HTW A;  2HT7 A;  3S8V A;  5FNR A;  4XMB A;  3SLI A;  4XOG A;  1E8V A;  4D52 A;  4GZO A;  2YA7 A;  2HTU A;  1CRZ A;  1H6L A;  2QWE A;  5GX3 A;  4HZZ A;  1SUU A;  5FNT A;  3SAL A;  4CSD A;  4FVK A;  4MWQ A;  4KS4 A;  5FZJ A;  3ADE A;  2VVZ A;  4GZW A;  2F24 A;  1DIL A;  3B7E A;  1N1V A;  4XJW A;  4D4U A;  3I1C A;  4KS1 A;  1F8B A;  4FP2 A;  1N6E A;  1POO A;  2WOZ A;  3K37 A;  2BF6 A;  3IAX A;  2SIL A;  1E8U A;  1IVD A;  3ALW A;  3P5B L;  1IVB A;  4GEZ A;  4YZ4 A;  5B2D A;  1L7G A;  2HU0 A;  2QWK A;  3G4E A;  3S94 A;  2F28 A;  3HLH A;  4GZX A;  2F13 A;  2IAU A;  2QWD A;  4R40 A;  5GX1 A;  4AHA A;  1MS4 A;  4D52 B;  4CPZ A;  1Q7F A;  1F8D A;  1W0P A;  4CPM A;  4SLI A;  2IAW A;  4GN8 A;  1IVG A;  2XZJ A;  4KS2 A;  4YY8 A;  3TI5 A;  4MWW A;  3H71 A;  4Q1U A;  4GDI A;  3A9H A;  2POO A;  3Q6K A;  1B9V A;  1V3B A;  1W8O A;  4FPO B;  3TI4 A;  3SRE A;  2ZZK A;  1F8C A;  2FHR A;  1NSB A;  1USX A;  3AMS A;  2XZK A;  4ZY3 A;  1X2J A;  2F0Z A;  4FQ4 A;  4IFN X;  1Z4Y A;  3CYE A;  3SRG A;  4YZ1 A;  1MWE A;  1NSC A;  2AEQ A;  2AGS A;  2VAQ A;  4CPL A;  4L7D A;  1NN2 A;  1NNA A;  4J9T A;  3CL0 A;  2QWA A;  4FPE A;  4FPK A;  2ZWA A;  4C1Y A;  1W0O A;  2F12 A;  1INV A;  1IVC A;  4ZGC A;  2QWJ A;  2AEP A;  3W09 A;  4AH4 A;  3HLI A;  2SLI A;  5H47 A;  1EUT A;  4MX0 A;  4D52 C;  2JKB A;  3TC9 A;  3O4P A;  4MJV A;  3DR2 A;  2IAS A;  2W5N A;  4FOV A;  2IAX A;  5F9T A;  2GVU A;  2IAP A;  1MZ5 A;  4NN9 A;  4NC5 A;  4O5T A;  4QNP A;  4XJA A;  3TIC A;  1NCD N;  5GX4 A;  4WA3 A;  1N1S A;  2FPB A;  4GZQ A;  3V1S A;  4MWL A;  1ING A;  4CPO A;  3ZGD A;  4IFL X;  7NN9 A;  5D9D A;  3GVK A;  1U6D X;  5EX7 A;  4MWY A;  1RWI A;  2VK5 A;  4Q6K A;  4YZ2 A;  5HX0 A;  4K1J A;  4XMA A;  3L6V A;  1MZ6 A;  1Z4V A;  2HTV A;  5FWW A;  2IAV A;  5FNU A;  2X9M A;  2FP8 A;  3H72 A;  3VNH A;  4WEG A;  3TI8 A;  1NCB N;  4HIZ A;  1NMA N;  4MZA A;  4CH9 A;  4QN7 A;  4MC7 A;  1NSD A;  4L7C A;  4XJQ A;  1N6D A;  3GVL A;  2VW1 A;  1DIM A;  4GZS A;  1V04 A;  2AH2 A;  4M4V A;  4GNC A;  1W8N A;  1A4G A;  2CML A;  3E5Z A;  4XJR A;  3GVJ A;  4H53 A;  4YW5 A;  4H52 A;  4X49 A;  4XIO A;  1N7D A;  3D12 A;  1NCA N;  2QWH A;  5M1Z A;  1NNC A;  4AGI A;  4FZH A;  4DGR A;  1INY A;  2QWF A;  1WCS A;  4FPY A;  2HTY A;  1XOE A;  4FOY A;  2W38 A;  2F29 A;  4FPC A;  2SIM A;  4AGT A;  4IMB A;  4MWV A;  3SAN A;  4I00 A;  4XHB A;  1W20 A;  2BER A;  1K32 A;  4HZX A;  5JYY A;  3JU4 A;  1V0F A;  4QN5 A;  1INW A;  2G8S A;  4FPJ A;  4XE9 A;  4XYX A;  2F27 A;  3BEQ A;  2P4O A;  2YA5 A;  1ZGK A;  5GTQ A;  2RKC A;  4MWX A;  4YZ3 A;  5HUN A;  1MS1 A;  3LI4 A;  1N1T A;  2VPJ A;  4K3Y A;  4CPY A;  4KS5 A;  2QWC A;  4B7M A;  1QBI A;  1E1A A;  1VCU A;  4GZT A;  4N1B A;  4YZ5 A;  3SOV A;  1MS5 A;  4K1H A;  4WEF A;  4GJT A;  4M4N A;  1L7F A;  4O5S A;  4FPL A;  2H2U A;  3HRP A;  2W5O A;  4FPF A;  1MS8 A;  1WCQ A;  1S0I A;  3V64 C;  1MS0 A;  2HTQ A;  1BJI A;  2XZI A;  3SOQ A;  3Q6P A;  3CL2 A;  4M4U A;  3NSS A;  2BZD A;  1S18 A;  4QN6 A;  1E8T A;  2DG0 A;  4FPG A;  4MWJ A;  4ASC A;  2QE8 A;  1NCC N;  3DAS A;  3AMR A;  4HZY A;  3FVZ A;  3TI6 A;  4HHO A;  2B8H A;  1S0J A;  5EO8 A;  4YW1 A;  1NMB N;  3WWA A;  3ZGC A;  4XJZ A;  4DG6 A;  4C1Y B;  1EUS A;  4IQK A;  3S8Z A;  2F26 A;  4QN4 A;  4QN3 A;  4GNA A;  5FZN A;  3G4H A;  1SO7 A;  4WA5 A;  4IFJ A;  5FNS A;  4JF7 A;  3TIB A;  2HT8 A;  4XJ8 A;  3B69 A;  2ISM A;  4NCS A;  1W1X A;  4XMI A;  3WW9 A;  3LI5 A;  3BYC A;  3D11 A;  3K3A A;  1B9T A;  2YDP A;  3K36 A;  4FJ6 A;  5D9C A;  1V3C A;  2VSM A;  4KS3 A;  4PWZ A;  1S1D A;  3KGG A;  4GN7 A;  1VCJ A;  4XIL A;  2YA6 A;  5NN9 A;  1MS3 A;  1V0Z A;  4G3N A;  1A4Q A;  2A75 A;  4B7Q A;  2IVZ A;  3WDZ A;  1SLI A;  4UF7 A;  3H6J A;  4GN9 A;  3A9G A;  1N6F A;  3S2K A;  2BAT A;  2GVW A; 
#chains in the Genus database with same CATH homology
 3NO0 A;  4G3N A;  3L6V A;  3UC1 A;  1SUU A;  1ZI0 A;  1WP5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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