2WOKA

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with bradykinin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
553
structure length
553
Chain Sequence
PAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Peptide binding protein/peptide
molecule keywords CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
publication title Crystal structures of an oligopeptide-binding protein from the biosynthetic pathway of the beta-lactamase inhibitor clavulanic acid.
pubmed doi rcsb
source organism Streptomyces clavuligerus
total genus 182
structure length 553
sequence length 553
ec nomenclature
pdb deposition date 2009-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 2wokA02
1QKAA 2WOKA 1B5JA 2NOOA 2WOPA 1B4HA 1B46A 3M8UA 1UIVA 4GL8A 3RY3A 1VR5A 1OLCA 1JEUA 4XKQA 1DPPA 1B3LA 1RKMA 4PFYA 4ZE9A 4ZEKA 3I5OA 4PFTA 3QIMA 4ZEDA 5HM4B 2B4LA 3TCFA 1B6HA 4OETA 3RYBA 4JSDA 3DRFA 3MVZA 3DP8A 5KZTA 3DRHA 4QFNA 1B3HA 1B9JA 3DRGA 3FTOA 5ICQA 3RYAA 4OFJA 4OFLA 2RKMA 1DPEA 4I9DA 4XKRA 1JEVA 3E3KA 1B2HA 1ZTYA 3TCHA 4DCYA 1B5HA 2GRVA 5L8DA 1B3GA 3CHGA 4QFKA 3PAMA 4RA1A 1B0HA 4ZECA 4OFOA 4WEDA 1B51A 2B4MA 1B58A 4FAJA 3MZ9A 1UIUA 3T66A 3DRIA 3MVXA 2O7IA 1B4ZA 1B32A 3RQTA 2OLBA 1B5IA 3MW0A 4GF8A 5ISUA 4GFRA 2WOLA 1B05A 4ZEBA 4OERA 2D5WA 3DRJA 4DCXA 3TCGA 4XKNA 4XKPA 1B52A 4ZEIA 3ZS6A 1ZU0A 4ONYA 4PFWA 4QFPA 3MZBA 4ZE8A 4OEVA 4TOZA 3DRKA 1JETA 1ZLQA 1B1HA 3O9PA 1B40A 4OEUA 1B3FA 2Z23A 4OESA 4QFOA 1XOCA 3TPAA 1QKBA 1OLAA 4PFUA 4I8CA 5F1QA 3O6PA 3MVWA 4QFLA 4JSOA 1B7HA 3LVUA 3MVYA 1UQWA
chains in the Genus database with same CATH superfamily
1QKAA 2WOKA 1B5JA 2NOOA 2WOPA 1B4HA 1B46A 3M8UA 1UIVA 4GL8A 3RY3A 1VR5A 1OLCA 1JEUA 4XKQA 1DPPA 1B3LA 1RKMA 4PFYA 4ZE9A 4ZEKA 3I5OA 4PFTA 3QIMA 4ZEDA 5HM4B 2B4LA 3TCFA 1B6HA 4OETA 3RYBA 4JSDA 3DRFA 3MVZA 3DP8A 5KZTA 3DRHA 4QFNA 1B3HA 1B9JA 3DRGA 3FTOA 5ICQA 3RYAA 4OFJA 4OFLA 2RKMA 1DPEA 4I9DA 4XKRA 1JEVA 3E3KA 1B2HA 1ZTYA 3TCHA 4DCYA 1B5HA 2GRVA 5L8DA 1B3GA 3CHGA 4QFKA 3PAMA 4RA1A 1B0HA 4ZECA 4OFOA 4WEDA 1B51A 2B4MA 1B58A 4FAJA 3MZ9A 1UIUA 3T66A 3DRIA 3MVXA 2O7IA 1B4ZA 1B32A 3RQTA 2OLBA 1B5IA 3MW0A 4GF8A 5ISUA 4GFRA 2WOLA 1B05A 4ZEBA 4OERA 2D5WA 3DRJA 4DCXA 3TCGA 4XKNA 4XKPA 1B52A 4ZEIA 3ZS6A 1ZU0A 4ONYA 4PFWA 4QFPA 3MZBA 4ZE8A 4OEVA 4TOZA 3DRKA 1JETA 1ZLQA 1B1HA 3O9PA 1B40A 4OEUA 1B3FA 2Z23A 4OESA 4QFOA 1XOCA 3TPAA 1QKBA 1OLAA 4PFUA 4I8CA 5F1QA 3O6PA 3MVWA 4QFLA 4JSOA 1B7HA 3LVUA 3MVYA 1UQWA
chains in the Genus database with same CATH topology
1QKAA 2WOKA 1B5JA 2NOOA 2WOPA 1B4HA 1B46A 3M8UA 1UIVA 4GL8A 3RY3A 1VR5A 1OLCA 1JEUA 4XKQA 1DPPA 1B3LA 1RKMA 4PFYA 4ZE9A 4ZEKA 3I5OA 4PFTA 3QIMA 4ZEDA 5HM4B 2B4LA 3TCFA 1B6HA 4OETA 3RYBA 4JSDA 3DRFA 3MVZA 3DP8A 5KZTA 3DRHA 4QFNA 1B3HA 1B9JA 3DRGA 3FTOA 5ICQA 3RYAA 4OFJA 4OFLA 2RKMA 1DPEA 4I9DA 4XKRA 1JEVA 3E3KA 1B2HA 1ZTYA 3TCHA 4DCYA 1B5HA 2GRVA 5L8DA 1B3GA 3CHGA 4QFKA 3PAMA 4RA1A 1B0HA 4ZECA 4OFOA 4WEDA 1B51A 2B4MA 1B58A 4FAJA 3MZ9A 1UIUA 3T66A 3DRIA 3MVXA 2O7IA 1B4ZA 1B32A 3RQTA 2OLBA 1B5IA 3MW0A 4GF8A 5ISUA 4GFRA 2WOLA 1B05A 4ZEBA 4OERA 2D5WA 3DRJA 4DCXA 3TCGA 4XKNA 4XKPA 1B52A 4ZEIA 3ZS6A 1ZU0A 4ONYA 4PFWA 4QFPA 3MZBA 4ZE8A 4OEVA 4TOZA 3DRKA 1JETA 1ZLQA 1B1HA 3O9PA 1B40A 4OEUA 1B3FA 2Z23A 4OESA 4QFOA 1XOCA 3TPAA 1QKBA 1OLAA 4PFUA 4I8CA 5F1QA 3O6PA 3MVWA 4QFLA 4JSOA 1B7HA 3LVUA 3MVYA 1UQWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QKA A;  2WOK A;  1B5J A;  2NOO A;  2WOP A;  1B4H A;  1B46 A;  3M8U A;  1UIV A;  4GL8 A;  3RY3 A;  1VR5 A;  1OLC A;  1JEU A;  4XKQ A;  1DPP A;  1B3L A;  1RKM A;  4PFY A;  4ZE9 A;  4ZEK A;  3I5O A;  4PFT A;  3QIM A;  4ZED A;  5HM4 B;  2B4L A;  3TCF A;  1B6H A;  4OET A;  3RYB A;  4JSD A;  3DRF A;  3MVZ A;  3DP8 A;  5KZT A;  3DRH A;  4QFN A;  1B3H A;  1B9J A;  3DRG A;  3FTO A;  5ICQ A;  3RYA A;  4OFJ A;  4OFL A;  2RKM A;  1DPE A;  4I9D A;  4XKR A;  1JEV A;  3E3K A;  1B2H A;  1ZTY A;  3TCH A;  4DCY A;  1B5H A;  2GRV A;  5L8D A;  1B3G A;  3CHG A;  4QFK A;  3PAM A;  4RA1 A;  1B0H A;  4ZEC A;  4OFO A;  4WED A;  1B51 A;  2B4M A;  1B58 A;  4FAJ A;  3MZ9 A;  1UIU A;  3T66 A;  3DRI A;  3MVX A;  2O7I A;  1B4Z A;  1B32 A;  3RQT A;  2OLB A;  1B5I A;  3MW0 A;  4GF8 A;  5ISU A;  4GFR A;  2WOL A;  1B05 A;  4ZEB A;  4OER A;  2D5W A;  3DRJ A;  4DCX A;  3TCG A;  4XKN A;  4XKP A;  1B52 A;  4ZEI A;  3ZS6 A;  1ZU0 A;  4ONY A;  4PFW A;  4QFP A;  3MZB A;  4ZE8 A;  4OEV A;  4TOZ A;  3DRK A;  1JET A;  1ZLQ A;  1B1H A;  3O9P A;  1B40 A;  4OEU A;  1B3F A;  2Z23 A;  4OES A;  4QFO A;  1XOC A;  3TPA A;  1QKB A;  1OLA A;  4PFU A;  4I8C A;  5F1Q A;  3O6P A;  3MVW A;  4QFL A;  4JSO A;  1B7H A;  3LVU A;  3MVY A;  1UQW A; 
#chains in the Genus database with same CATH topology
 1QKA A;  2WOK A;  1B5J A;  2NOO A;  2WOP A;  1B4H A;  1B46 A;  3M8U A;  1UIV A;  4GL8 A;  3RY3 A;  1VR5 A;  1OLC A;  1JEU A;  4XKQ A;  1DPP A;  1B3L A;  1RKM A;  4PFY A;  4ZE9 A;  4ZEK A;  3I5O A;  4PFT A;  3QIM A;  4ZED A;  5HM4 B;  2B4L A;  3TCF A;  1B6H A;  4OET A;  3RYB A;  4JSD A;  3DRF A;  3MVZ A;  3DP8 A;  5KZT A;  3DRH A;  4QFN A;  1B3H A;  1B9J A;  3DRG A;  3FTO A;  5ICQ A;  3RYA A;  4OFJ A;  4OFL A;  2RKM A;  1DPE A;  4I9D A;  4XKR A;  1JEV A;  3E3K A;  1B2H A;  1ZTY A;  3TCH A;  4DCY A;  1B5H A;  2GRV A;  5L8D A;  1B3G A;  3CHG A;  4QFK A;  3PAM A;  4RA1 A;  1B0H A;  4ZEC A;  4OFO A;  4WED A;  1B51 A;  2B4M A;  1B58 A;  4FAJ A;  3MZ9 A;  1UIU A;  3T66 A;  3DRI A;  3MVX A;  2O7I A;  1B4Z A;  1B32 A;  3RQT A;  2OLB A;  1B5I A;  3MW0 A;  4GF8 A;  5ISU A;  4GFR A;  2WOL A;  1B05 A;  4ZEB A;  4OER A;  2D5W A;  3DRJ A;  4DCX A;  3TCG A;  4XKN A;  4XKP A;  1B52 A;  4ZEI A;  3ZS6 A;  1ZU0 A;  4ONY A;  4PFW A;  4QFP A;  3MZB A;  4ZE8 A;  4OEV A;  4TOZ A;  3DRK A;  1JET A;  1ZLQ A;  1B1H A;  3O9P A;  1B40 A;  4OEU A;  1B3F A;  2Z23 A;  4OES A;  4QFO A;  1XOC A;  3TPA A;  1QKB A;  1OLA A;  4PFU A;  4I8C A;  5F1Q A;  3O6P A;  3MVW A;  4QFL A;  4JSO A;  1B7H A;  3LVU A;  3MVY A;  1UQW A; 
#chains in the Genus database with same CATH homology
 1QKA A;  2WOK A;  1B5J A;  2NOO A;  2WOP A;  1B4H A;  1B46 A;  3M8U A;  1UIV A;  4GL8 A;  3RY3 A;  1VR5 A;  1OLC A;  1JEU A;  4XKQ A;  1DPP A;  1B3L A;  1RKM A;  4PFY A;  4ZE9 A;  4ZEK A;  3I5O A;  4PFT A;  3QIM A;  4ZED A;  5HM4 B;  2B4L A;  3TCF A;  1B6H A;  4OET A;  3RYB A;  4JSD A;  3DRF A;  3MVZ A;  3DP8 A;  5KZT A;  3DRH A;  4QFN A;  1B3H A;  1B9J A;  3DRG A;  3FTO A;  5ICQ A;  3RYA A;  4OFJ A;  4OFL A;  2RKM A;  1DPE A;  4I9D A;  4XKR A;  1JEV A;  3E3K A;  1B2H A;  1ZTY A;  3TCH A;  4DCY A;  1B5H A;  2GRV A;  5L8D A;  1B3G A;  3CHG A;  4QFK A;  3PAM A;  4RA1 A;  1B0H A;  4ZEC A;  4OFO A;  4WED A;  1B51 A;  2B4M A;  1B58 A;  4FAJ A;  3MZ9 A;  1UIU A;  3T66 A;  3DRI A;  3MVX A;  2O7I A;  1B4Z A;  1B32 A;  3RQT A;  2OLB A;  1B5I A;  3MW0 A;  4GF8 A;  5ISU A;  4GFR A;  2WOL A;  1B05 A;  4ZEB A;  4OER A;  2D5W A;  3DRJ A;  4DCX A;  3TCG A;  4XKN A;  4XKP A;  1B52 A;  4ZEI A;  3ZS6 A;  1ZU0 A;  4ONY A;  4PFW A;  4QFP A;  3MZB A;  4ZE8 A;  4OEV A;  4TOZ A;  3DRK A;  1JET A;  1ZLQ A;  1B1H A;  3O9P A;  1B40 A;  4OEU A;  1B3F A;  2Z23 A;  4OES A;  4QFO A;  1XOC A;  3TPA A;  1QKB A;  1OLA A;  4PFU A;  4I8C A;  5F1Q A;  3O6P A;  3MVW A;  4QFL A;  4JSO A;  1B7H A;  3LVU A;  3MVY A;  1UQW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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