2WOKA

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with bradykinin
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
553
structure length
553
Chain Sequence
PAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
publication title Crystal structures of an oligopeptide-binding protein from the biosynthetic pathway of the beta-lactamase inhibitor clavulanic acid.
pubmed doi rcsb
source organism Streptomyces clavuligerus
molecule tags Peptide binding protein/peptide
total genus 182
structure length 553
sequence length 553
ec nomenclature
pdb deposition date 2009-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 2wokA02
4ZE8A 1OLCA 3TCFA 3RQTA 1B3HA 4OFLA 1B51A 1DPEA 1B58A 1B5JA 3T66A 5ISUA 2GRVA 4OEUA 4FAJA 1RKMA 1B52A 1B6HA 4DCXA 4QFOA 4XKNA 3DP8A 3M8UA 3TCHA 2RKMA 1ZU0A 4JSOA 3CHGA 1B46A 1XOCA 1JEVA 4XKQA 3MVZA 4GF8A 1B4ZA 2B4LA 2WOKA 3QIMA 2O7IA 1B7HA 3DRJA 3DRHA 4ZECA 1UQWA 3DRGA 4JSDA 2OLBA 4TOZA 3TPAA 1B3LA 3MVWA 2Z23A 4I8CA 4DCYA 1UIUA 1DPPA 1B1HA 4OFJA 3MW0A 4QFPA 4ZE9A 3LVUA 1ZLQA 4I9DA 3MZBA 5L8DA 3E3KA 3DRKA 4QFNA 4XKPA 4ONYA 4WEDA 3DRFA 3PAMA 1B0HA 5ICQA 1B5IA 1B2HA 4OEVA 4ZEBA 4OESA 1B5HA 3FTOA 1B40A 1QKAA 5F1QA 1OLAA 1B9JA 2WOLA 4OFOA 4PFUA 4GFRA 3TCGA 5KZTA 1UIVA 3MVXA 4ZEDA 4ZEKA 3ZS6A 5HM4B 1ZTYA 4PFTA 3MZ9A 3O6PA 1B3FA 4OETA 1JEUA 3O9PA 3RY3A 3RYBA 1B32A 2D5WA 4XKRA 1VR5A 3DRIA 4PFYA 4PFWA 2WOPA 3RYAA 1QKBA 4QFKA 2NOOA 1B4HA 4RA1A 4GL8A 3MVYA 1JETA 3I5OA 1B3GA 2B4MA 1B05A 4OERA 4ZEIA 4QFLA
chains in the Genus database with same CATH superfamily
4ZE8A 1OLCA 3TCFA 3RQTA 1B3HA 4OFLA 1B51A 1DPEA 1B58A 1B5JA 3T66A 5ISUA 2GRVA 4OEUA 4FAJA 1RKMA 1B52A 1B6HA 4DCXA 4QFOA 4XKNA 3DP8A 3M8UA 3TCHA 2RKMA 1ZU0A 4JSOA 3CHGA 1B46A 1XOCA 1JEVA 4XKQA 3MVZA 4GF8A 1B4ZA 2B4LA 2WOKA 3QIMA 2O7IA 1B7HA 3DRJA 3DRHA 4ZECA 1UQWA 3DRGA 4JSDA 2OLBA 4TOZA 3TPAA 1B3LA 3MVWA 2Z23A 4I8CA 4DCYA 1UIUA 1DPPA 1B1HA 4OFJA 3MW0A 4QFPA 4ZE9A 3LVUA 1ZLQA 4I9DA 3MZBA 5L8DA 3E3KA 3DRKA 4QFNA 4XKPA 4ONYA 4WEDA 3DRFA 3PAMA 1B0HA 5ICQA 1B5IA 1B2HA 4OEVA 4ZEBA 4OESA 1B5HA 3FTOA 1B40A 1QKAA 5F1QA 1OLAA 1B9JA 2WOLA 4OFOA 4PFUA 4GFRA 3TCGA 5KZTA 1UIVA 3MVXA 4ZEDA 4ZEKA 3ZS6A 5HM4B 1ZTYA 4PFTA 3MZ9A 3O6PA 1B3FA 4OETA 1JEUA 3O9PA 3RY3A 3RYBA 1B32A 2D5WA 4XKRA 1VR5A 3DRIA 4PFYA 4PFWA 2WOPA 3RYAA 1QKBA 4QFKA 2NOOA 1B4HA 4RA1A 4GL8A 3MVYA 1JETA 3I5OA 1B3GA 2B4MA 1B05A 4OERA 4ZEIA 4QFLA
chains in the Genus database with same CATH topology
4ZE8A 1OLCA 3TCFA 3RQTA 1B3HA 4OFLA 1B51A 1DPEA 1B58A 1B5JA 3T66A 5ISUA 2GRVA 4OEUA 4FAJA 1RKMA 1B52A 1B6HA 4DCXA 4QFOA 4XKNA 3DP8A 3M8UA 3TCHA 2RKMA 1ZU0A 4JSOA 3CHGA 1B46A 1XOCA 1JEVA 4XKQA 3MVZA 4GF8A 1B4ZA 2B4LA 2WOKA 3QIMA 2O7IA 1B7HA 3DRJA 3DRHA 4ZECA 1UQWA 3DRGA 4JSDA 2OLBA 4TOZA 3TPAA 1B3LA 3MVWA 2Z23A 4I8CA 4DCYA 1UIUA 1DPPA 1B1HA 4OFJA 3MW0A 4QFPA 4ZE9A 3LVUA 1ZLQA 4I9DA 3MZBA 5L8DA 3E3KA 3DRKA 4QFNA 4XKPA 4ONYA 4WEDA 3DRFA 3PAMA 1B0HA 5ICQA 1B5IA 1B2HA 4OEVA 4ZEBA 4OESA 1B5HA 3FTOA 1B40A 1QKAA 5F1QA 1OLAA 1B9JA 2WOLA 4OFOA 4PFUA 4GFRA 3TCGA 5KZTA 1UIVA 3MVXA 4ZEDA 4ZEKA 3ZS6A 5HM4B 1ZTYA 4PFTA 3MZ9A 3O6PA 1B3FA 4OETA 1JEUA 3O9PA 3RY3A 3RYBA 1B32A 2D5WA 4XKRA 1VR5A 3DRIA 4PFYA 4PFWA 2WOPA 3RYAA 1QKBA 4QFKA 2NOOA 1B4HA 4RA1A 4GL8A 3MVYA 1JETA 3I5OA 1B3GA 2B4MA 1B05A 4OERA 4ZEIA 4QFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZE8 A;  1OLC A;  3TCF A;  3RQT A;  1B3H A;  4OFL A;  1B51 A;  1DPE A;  1B58 A;  1B5J A;  3T66 A;  5ISU A;  2GRV A;  4OEU A;  4FAJ A;  1RKM A;  1B52 A;  1B6H A;  4DCX A;  4QFO A;  4XKN A;  3DP8 A;  3M8U A;  3TCH A;  2RKM A;  1ZU0 A;  4JSO A;  3CHG A;  1B46 A;  1XOC A;  1JEV A;  4XKQ A;  3MVZ A;  4GF8 A;  1B4Z A;  2B4L A;  2WOK A;  3QIM A;  2O7I A;  1B7H A;  3DRJ A;  3DRH A;  4ZEC A;  1UQW A;  3DRG A;  4JSD A;  2OLB A;  4TOZ A;  3TPA A;  1B3L A;  3MVW A;  2Z23 A;  4I8C A;  4DCY A;  1UIU A;  1DPP A;  1B1H A;  4OFJ A;  3MW0 A;  4QFP A;  4ZE9 A;  3LVU A;  1ZLQ A;  4I9D A;  3MZB A;  5L8D A;  3E3K A;  3DRK A;  4QFN A;  4XKP A;  4ONY A;  4WED A;  3DRF A;  3PAM A;  1B0H A;  5ICQ A;  1B5I A;  1B2H A;  4OEV A;  4ZEB A;  4OES A;  1B5H A;  3FTO A;  1B40 A;  1QKA A;  5F1Q A;  1OLA A;  1B9J A;  2WOL A;  4OFO A;  4PFU A;  4GFR A;  3TCG A;  5KZT A;  1UIV A;  3MVX A;  4ZED A;  4ZEK A;  3ZS6 A;  5HM4 B;  1ZTY A;  4PFT A;  3MZ9 A;  3O6P A;  1B3F A;  4OET A;  1JEU A;  3O9P A;  3RY3 A;  3RYB A;  1B32 A;  2D5W A;  4XKR A;  1VR5 A;  3DRI A;  4PFY A;  4PFW A;  2WOP A;  3RYA A;  1QKB A;  4QFK A;  2NOO A;  1B4H A;  4RA1 A;  4GL8 A;  3MVY A;  1JET A;  3I5O A;  1B3G A;  2B4M A;  1B05 A;  4OER A;  4ZEI A;  4QFL A; 
#chains in the Genus database with same CATH topology
 4ZE8 A;  1OLC A;  3TCF A;  3RQT A;  1B3H A;  4OFL A;  1B51 A;  1DPE A;  1B58 A;  1B5J A;  3T66 A;  5ISU A;  2GRV A;  4OEU A;  4FAJ A;  1RKM A;  1B52 A;  1B6H A;  4DCX A;  4QFO A;  4XKN A;  3DP8 A;  3M8U A;  3TCH A;  2RKM A;  1ZU0 A;  4JSO A;  3CHG A;  1B46 A;  1XOC A;  1JEV A;  4XKQ A;  3MVZ A;  4GF8 A;  1B4Z A;  2B4L A;  2WOK A;  3QIM A;  2O7I A;  1B7H A;  3DRJ A;  3DRH A;  4ZEC A;  1UQW A;  3DRG A;  4JSD A;  2OLB A;  4TOZ A;  3TPA A;  1B3L A;  3MVW A;  2Z23 A;  4I8C A;  4DCY A;  1UIU A;  1DPP A;  1B1H A;  4OFJ A;  3MW0 A;  4QFP A;  4ZE9 A;  3LVU A;  1ZLQ A;  4I9D A;  3MZB A;  5L8D A;  3E3K A;  3DRK A;  4QFN A;  4XKP A;  4ONY A;  4WED A;  3DRF A;  3PAM A;  1B0H A;  5ICQ A;  1B5I A;  1B2H A;  4OEV A;  4ZEB A;  4OES A;  1B5H A;  3FTO A;  1B40 A;  1QKA A;  5F1Q A;  1OLA A;  1B9J A;  2WOL A;  4OFO A;  4PFU A;  4GFR A;  3TCG A;  5KZT A;  1UIV A;  3MVX A;  4ZED A;  4ZEK A;  3ZS6 A;  5HM4 B;  1ZTY A;  4PFT A;  3MZ9 A;  3O6P A;  1B3F A;  4OET A;  1JEU A;  3O9P A;  3RY3 A;  3RYB A;  1B32 A;  2D5W A;  4XKR A;  1VR5 A;  3DRI A;  4PFY A;  4PFW A;  2WOP A;  3RYA A;  1QKB A;  4QFK A;  2NOO A;  1B4H A;  4RA1 A;  4GL8 A;  3MVY A;  1JET A;  3I5O A;  1B3G A;  2B4M A;  1B05 A;  4OER A;  4ZEI A;  4QFL A; 
#chains in the Genus database with same CATH homology
 4ZE8 A;  1OLC A;  3TCF A;  3RQT A;  1B3H A;  4OFL A;  1B51 A;  1DPE A;  1B58 A;  1B5J A;  3T66 A;  5ISU A;  2GRV A;  4OEU A;  4FAJ A;  1RKM A;  1B52 A;  1B6H A;  4DCX A;  4QFO A;  4XKN A;  3DP8 A;  3M8U A;  3TCH A;  2RKM A;  1ZU0 A;  4JSO A;  3CHG A;  1B46 A;  1XOC A;  1JEV A;  4XKQ A;  3MVZ A;  4GF8 A;  1B4Z A;  2B4L A;  2WOK A;  3QIM A;  2O7I A;  1B7H A;  3DRJ A;  3DRH A;  4ZEC A;  1UQW A;  3DRG A;  4JSD A;  2OLB A;  4TOZ A;  3TPA A;  1B3L A;  3MVW A;  2Z23 A;  4I8C A;  4DCY A;  1UIU A;  1DPP A;  1B1H A;  4OFJ A;  3MW0 A;  4QFP A;  4ZE9 A;  3LVU A;  1ZLQ A;  4I9D A;  3MZB A;  5L8D A;  3E3K A;  3DRK A;  4QFN A;  4XKP A;  4ONY A;  4WED A;  3DRF A;  3PAM A;  1B0H A;  5ICQ A;  1B5I A;  1B2H A;  4OEV A;  4ZEB A;  4OES A;  1B5H A;  3FTO A;  1B40 A;  1QKA A;  5F1Q A;  1OLA A;  1B9J A;  2WOL A;  4OFO A;  4PFU A;  4GFR A;  3TCG A;  5KZT A;  1UIV A;  3MVX A;  4ZED A;  4ZEK A;  3ZS6 A;  5HM4 B;  1ZTY A;  4PFT A;  3MZ9 A;  3O6P A;  1B3F A;  4OET A;  1JEU A;  3O9P A;  3RY3 A;  3RYB A;  1B32 A;  2D5W A;  4XKR A;  1VR5 A;  3DRI A;  4PFY A;  4PFW A;  2WOP A;  3RYA A;  1QKB A;  4QFK A;  2NOO A;  1B4H A;  4RA1 A;  4GL8 A;  3MVY A;  1JET A;  3I5O A;  1B3G A;  2B4M A;  1B05 A;  4OER A;  4ZEI A;  4QFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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