3DRHA

Crystal structure of lactococcal oppa co-crystallized with leu-enkephalin in an open conformation
Total Genus 193
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
559
structure length
559
Chain Sequence
LKAGNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Oligopeptide-binding protein oppA
publication title The structural basis for peptide selection by the transport receptor OppA
pubmed doi rcsb
source organism Lactococcus lactis
molecule tags Peptide binding protein
total genus 193
structure length 559
sequence length 559
ec nomenclature
pdb deposition date 2008-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 3drhA02
1B5IA 1OLCA 1B5JA 3LVUA 4PFTA 1B4HA 4DCYA 4JSOA 3E3KA 4ZEIA 2O7IA 4GFRA 3TCHA 1JETA 4RA1A 1QKBA 1B3FA 3DRFA 3MVYA 1ZLQA 4ZEDA 1B2HA 4OEUA 4QFKA 1ZU0A 1RKMA 1JEUA 4ZEBA 3DRHA 5L8DA 1B6HA 2GRVA 2WOLA 2WOPA 3TCFA 3RYBA 1ZTYA 3O9PA 4OFJA 3DRGA 3ZS6A 4PFUA 1B5HA 3MW0A 5KZTA 4I8CA 3MVZA 3M8UA 4XKRA 4XKNA 4QFPA 1UQWA 1B40A 1B3GA 4ONYA 3I5OA 5HM4B 4PFWA 2B4MA 3O6PA 3T66A 1B7HA 1B58A 4OERA 1UIVA 3TPAA 4GL8A 4GF8A 1B3HA 1B52A 3QIMA 4OESA 4QFLA 3RY3A 1B4ZA 3MVWA 4ZEKA 3MVXA 3TCGA 1B05A 4ZE8A 4XKQA 1UIUA 2Z23A 3FTOA 3RYAA 1OLAA 5ISUA 4OFOA 4QFNA 1B32A 1XOCA 1DPPA 2OLBA 1QKAA 1DPEA 3DP8A 4OEVA 4ZECA 3MZBA 1B9JA 4DCXA 1B51A 3DRKA 2NOOA 5ICQA 4I9DA 2D5WA 2RKMA 1B1HA 2B4LA 4QFOA 4WEDA 1B0HA 4PFYA 2WOKA 5F1QA 1JEVA 4ZE9A 3CHGA 3PAMA 3RQTA 1B46A 3DRIA 4XKPA 3DRJA 3MZ9A 4TOZA 1VR5A 4OFLA 4FAJA 1B3LA 4JSDA 4OETA
chains in the Genus database with same CATH superfamily
1B5IA 1OLCA 1B5JA 3LVUA 4PFTA 1B4HA 4DCYA 4JSOA 3E3KA 4ZEIA 2O7IA 4GFRA 3TCHA 1JETA 4RA1A 1QKBA 1B3FA 3DRFA 3MVYA 1ZLQA 4ZEDA 1B2HA 4OEUA 4QFKA 1ZU0A 1RKMA 1JEUA 4ZEBA 3DRHA 5L8DA 1B6HA 2GRVA 2WOLA 2WOPA 3TCFA 3RYBA 1ZTYA 3O9PA 4OFJA 3DRGA 3ZS6A 4PFUA 1B5HA 3MW0A 5KZTA 4I8CA 3MVZA 3M8UA 4XKRA 4XKNA 4QFPA 1UQWA 1B40A 1B3GA 4ONYA 3I5OA 5HM4B 4PFWA 2B4MA 3O6PA 3T66A 1B7HA 1B58A 4OERA 1UIVA 3TPAA 4GL8A 4GF8A 1B3HA 1B52A 3QIMA 4OESA 4QFLA 3RY3A 1B4ZA 3MVWA 4ZEKA 3MVXA 3TCGA 1B05A 4ZE8A 4XKQA 1UIUA 2Z23A 3FTOA 3RYAA 1OLAA 5ISUA 4OFOA 4QFNA 1B32A 1XOCA 1DPPA 2OLBA 1QKAA 1DPEA 3DP8A 4OEVA 4ZECA 3MZBA 1B9JA 4DCXA 1B51A 3DRKA 2NOOA 5ICQA 4I9DA 2D5WA 2RKMA 1B1HA 2B4LA 4QFOA 4WEDA 1B0HA 4PFYA 2WOKA 5F1QA 1JEVA 4ZE9A 3CHGA 3PAMA 3RQTA 1B46A 3DRIA 4XKPA 3DRJA 3MZ9A 4TOZA 1VR5A 4OFLA 4FAJA 1B3LA 4JSDA 4OETA
chains in the Genus database with same CATH topology
1B5IA 1OLCA 1B5JA 3LVUA 4PFTA 1B4HA 4DCYA 4JSOA 3E3KA 4ZEIA 2O7IA 4GFRA 3TCHA 1JETA 4RA1A 1QKBA 1B3FA 3DRFA 3MVYA 1ZLQA 4ZEDA 1B2HA 4OEUA 4QFKA 1ZU0A 1RKMA 1JEUA 4ZEBA 3DRHA 5L8DA 1B6HA 2GRVA 2WOLA 2WOPA 3TCFA 3RYBA 1ZTYA 3O9PA 4OFJA 3DRGA 3ZS6A 4PFUA 1B5HA 3MW0A 5KZTA 4I8CA 3MVZA 3M8UA 4XKRA 4XKNA 4QFPA 1UQWA 1B40A 1B3GA 4ONYA 3I5OA 5HM4B 4PFWA 2B4MA 3O6PA 3T66A 1B7HA 1B58A 4OERA 1UIVA 3TPAA 4GL8A 4GF8A 1B3HA 1B52A 3QIMA 4OESA 4QFLA 3RY3A 1B4ZA 3MVWA 4ZEKA 3MVXA 3TCGA 1B05A 4ZE8A 4XKQA 1UIUA 2Z23A 3FTOA 3RYAA 1OLAA 5ISUA 4OFOA 4QFNA 1B32A 1XOCA 1DPPA 2OLBA 1QKAA 1DPEA 3DP8A 4OEVA 4ZECA 3MZBA 1B9JA 4DCXA 1B51A 3DRKA 2NOOA 5ICQA 4I9DA 2D5WA 2RKMA 1B1HA 2B4LA 4QFOA 4WEDA 1B0HA 4PFYA 2WOKA 5F1QA 1JEVA 4ZE9A 3CHGA 3PAMA 3RQTA 1B46A 3DRIA 4XKPA 3DRJA 3MZ9A 4TOZA 1VR5A 4OFLA 4FAJA 1B3LA 4JSDA 4OETA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1B5I A;  1OLC A;  1B5J A;  3LVU A;  4PFT A;  1B4H A;  4DCY A;  4JSO A;  3E3K A;  4ZEI A;  2O7I A;  4GFR A;  3TCH A;  1JET A;  4RA1 A;  1QKB A;  1B3F A;  3DRF A;  3MVY A;  1ZLQ A;  4ZED A;  1B2H A;  4OEU A;  4QFK A;  1ZU0 A;  1RKM A;  1JEU A;  4ZEB A;  3DRH A;  5L8D A;  1B6H A;  2GRV A;  2WOL A;  2WOP A;  3TCF A;  3RYB A;  1ZTY A;  3O9P A;  4OFJ A;  3DRG A;  3ZS6 A;  4PFU A;  1B5H A;  3MW0 A;  5KZT A;  4I8C A;  3MVZ A;  3M8U A;  4XKR A;  4XKN A;  4QFP A;  1UQW A;  1B40 A;  1B3G A;  4ONY A;  3I5O A;  5HM4 B;  4PFW A;  2B4M A;  3O6P A;  3T66 A;  1B7H A;  1B58 A;  4OER A;  1UIV A;  3TPA A;  4GL8 A;  4GF8 A;  1B3H A;  1B52 A;  3QIM A;  4OES A;  4QFL A;  3RY3 A;  1B4Z A;  3MVW A;  4ZEK A;  3MVX A;  3TCG A;  1B05 A;  4ZE8 A;  4XKQ A;  1UIU A;  2Z23 A;  3FTO A;  3RYA A;  1OLA A;  5ISU A;  4OFO A;  4QFN A;  1B32 A;  1XOC A;  1DPP A;  2OLB A;  1QKA A;  1DPE A;  3DP8 A;  4OEV A;  4ZEC A;  3MZB A;  1B9J A;  4DCX A;  1B51 A;  3DRK A;  2NOO A;  5ICQ A;  4I9D A;  2D5W A;  2RKM A;  1B1H A;  2B4L A;  4QFO A;  4WED A;  1B0H A;  4PFY A;  2WOK A;  5F1Q A;  1JEV A;  4ZE9 A;  3CHG A;  3PAM A;  3RQT A;  1B46 A;  3DRI A;  4XKP A;  3DRJ A;  3MZ9 A;  4TOZ A;  1VR5 A;  4OFL A;  4FAJ A;  1B3L A;  4JSD A;  4OET A; 
#chains in the Genus database with same CATH topology
 1B5I A;  1OLC A;  1B5J A;  3LVU A;  4PFT A;  1B4H A;  4DCY A;  4JSO A;  3E3K A;  4ZEI A;  2O7I A;  4GFR A;  3TCH A;  1JET A;  4RA1 A;  1QKB A;  1B3F A;  3DRF A;  3MVY A;  1ZLQ A;  4ZED A;  1B2H A;  4OEU A;  4QFK A;  1ZU0 A;  1RKM A;  1JEU A;  4ZEB A;  3DRH A;  5L8D A;  1B6H A;  2GRV A;  2WOL A;  2WOP A;  3TCF A;  3RYB A;  1ZTY A;  3O9P A;  4OFJ A;  3DRG A;  3ZS6 A;  4PFU A;  1B5H A;  3MW0 A;  5KZT A;  4I8C A;  3MVZ A;  3M8U A;  4XKR A;  4XKN A;  4QFP A;  1UQW A;  1B40 A;  1B3G A;  4ONY A;  3I5O A;  5HM4 B;  4PFW A;  2B4M A;  3O6P A;  3T66 A;  1B7H A;  1B58 A;  4OER A;  1UIV A;  3TPA A;  4GL8 A;  4GF8 A;  1B3H A;  1B52 A;  3QIM A;  4OES A;  4QFL A;  3RY3 A;  1B4Z A;  3MVW A;  4ZEK A;  3MVX A;  3TCG A;  1B05 A;  4ZE8 A;  4XKQ A;  1UIU A;  2Z23 A;  3FTO A;  3RYA A;  1OLA A;  5ISU A;  4OFO A;  4QFN A;  1B32 A;  1XOC A;  1DPP A;  2OLB A;  1QKA A;  1DPE A;  3DP8 A;  4OEV A;  4ZEC A;  3MZB A;  1B9J A;  4DCX A;  1B51 A;  3DRK A;  2NOO A;  5ICQ A;  4I9D A;  2D5W A;  2RKM A;  1B1H A;  2B4L A;  4QFO A;  4WED A;  1B0H A;  4PFY A;  2WOK A;  5F1Q A;  1JEV A;  4ZE9 A;  3CHG A;  3PAM A;  3RQT A;  1B46 A;  3DRI A;  4XKP A;  3DRJ A;  3MZ9 A;  4TOZ A;  1VR5 A;  4OFL A;  4FAJ A;  1B3L A;  4JSD A;  4OET A; 
#chains in the Genus database with same CATH homology
 1B5I A;  1OLC A;  1B5J A;  3LVU A;  4PFT A;  1B4H A;  4DCY A;  4JSO A;  3E3K A;  4ZEI A;  2O7I A;  4GFR A;  3TCH A;  1JET A;  4RA1 A;  1QKB A;  1B3F A;  3DRF A;  3MVY A;  1ZLQ A;  4ZED A;  1B2H A;  4OEU A;  4QFK A;  1ZU0 A;  1RKM A;  1JEU A;  4ZEB A;  3DRH A;  5L8D A;  1B6H A;  2GRV A;  2WOL A;  2WOP A;  3TCF A;  3RYB A;  1ZTY A;  3O9P A;  4OFJ A;  3DRG A;  3ZS6 A;  4PFU A;  1B5H A;  3MW0 A;  5KZT A;  4I8C A;  3MVZ A;  3M8U A;  4XKR A;  4XKN A;  4QFP A;  1UQW A;  1B40 A;  1B3G A;  4ONY A;  3I5O A;  5HM4 B;  4PFW A;  2B4M A;  3O6P A;  3T66 A;  1B7H A;  1B58 A;  4OER A;  1UIV A;  3TPA A;  4GL8 A;  4GF8 A;  1B3H A;  1B52 A;  3QIM A;  4OES A;  4QFL A;  3RY3 A;  1B4Z A;  3MVW A;  4ZEK A;  3MVX A;  3TCG A;  1B05 A;  4ZE8 A;  4XKQ A;  1UIU A;  2Z23 A;  3FTO A;  3RYA A;  1OLA A;  5ISU A;  4OFO A;  4QFN A;  1B32 A;  1XOC A;  1DPP A;  2OLB A;  1QKA A;  1DPE A;  3DP8 A;  4OEV A;  4ZEC A;  3MZB A;  1B9J A;  4DCX A;  1B51 A;  3DRK A;  2NOO A;  5ICQ A;  4I9D A;  2D5W A;  2RKM A;  1B1H A;  2B4L A;  4QFO A;  4WED A;  1B0H A;  4PFY A;  2WOK A;  5F1Q A;  1JEV A;  4ZE9 A;  3CHG A;  3PAM A;  3RQT A;  1B46 A;  3DRI A;  4XKP A;  3DRJ A;  3MZ9 A;  4TOZ A;  1VR5 A;  4OFL A;  4FAJ A;  1B3L A;  4JSD A;  4OET A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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