3RYAA

Lactococcal oppa complexed with slsqlssqs
Total Genus 171
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
559
structure length
559
Chain Sequence
GNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSSAKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Oligopeptide-binding protein oppA
publication title Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
pubmed doi rcsb
source organism Lactococcus lactis
molecule tags Peptide binding protein
total genus 171
structure length 559
sequence length 559
ec nomenclature
pdb deposition date 2011-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 3ryaA02
4OEVA 4PFTA 1XOCA 4ZEIA 4OESA 3T66A 1B3FA 1B3GA 3DP8A 4JSOA 3TCHA 1UQWA 1JEUA 3DRFA 3DRJA 4ZECA 5F1QA 2D5WA 1VR5A 2RKMA 4I9DA 4OFLA 4TOZA 4GF8A 1UIVA 1QKBA 4GL8A 2WOKA 3MZ9A 4XKQA 3MVXA 4ZEDA 5ISUA 4ZEKA 4OERA 1B40A 1OLCA 4QFOA 1OLAA 1B58A 1B3LA 1B3HA 3DRHA 3MVZA 2NOOA 3DRIA 3RQTA 1ZU0A 3MVWA 5KZTA 4QFLA 4QFKA 3DRKA 3TPAA 1B5JA 3RYAA 1DPEA 4ZE9A 3M8UA 3TCGA 1B5HA 3I5OA 4DCXA 4PFUA 5L8DA 1B51A 2WOLA 4QFPA 1B4ZA 1JEVA 4ZEBA 1ZLQA 4OETA 4JSDA 1B0HA 1B05A 4PFWA 1B32A 1B9JA 3RY3A 1B52A 1B4HA 1B7HA 1QKAA 3QIMA 4PFYA 4GFRA 4I8CA 3FTOA 2Z23A 1B5IA 4DCYA 1B1HA 4OFJA 2O7IA 4ZE8A 5HM4B 1B2HA 1B46A 3PAMA 2B4MA 4XKNA 4FAJA 2GRVA 2B4LA 1DPPA 4WEDA 2OLBA 3CHGA 3TCFA 3MZBA 5ICQA 4XKPA 3E3KA 4OFOA 3RYBA 3O9PA 4OEUA 1JETA 3DRGA 3LVUA 3ZS6A 1B6HA 1RKMA 1UIUA 2WOPA 1ZTYA 4RA1A 4XKRA 3O6PA 3MVYA 4QFNA 3MW0A 4ONYA
chains in the Genus database with same CATH superfamily
4OEVA 4PFTA 1XOCA 4ZEIA 4OESA 3T66A 1B3FA 1B3GA 3DP8A 4JSOA 3TCHA 1UQWA 1JEUA 3DRFA 3DRJA 4ZECA 5F1QA 2D5WA 1VR5A 2RKMA 4I9DA 4OFLA 4TOZA 4GF8A 1UIVA 1QKBA 4GL8A 2WOKA 3MZ9A 4XKQA 3MVXA 4ZEDA 5ISUA 4ZEKA 4OERA 1B40A 1OLCA 4QFOA 1OLAA 1B58A 1B3LA 1B3HA 3DRHA 3MVZA 2NOOA 3DRIA 3RQTA 1ZU0A 3MVWA 5KZTA 4QFLA 4QFKA 3DRKA 3TPAA 1B5JA 3RYAA 1DPEA 4ZE9A 3M8UA 3TCGA 1B5HA 3I5OA 4DCXA 4PFUA 5L8DA 1B51A 2WOLA 4QFPA 1B4ZA 1JEVA 4ZEBA 1ZLQA 4OETA 4JSDA 1B0HA 1B05A 4PFWA 1B32A 1B9JA 3RY3A 1B52A 1B4HA 1B7HA 1QKAA 3QIMA 4PFYA 4GFRA 4I8CA 3FTOA 2Z23A 1B5IA 4DCYA 1B1HA 4OFJA 2O7IA 4ZE8A 5HM4B 1B2HA 1B46A 3PAMA 2B4MA 4XKNA 4FAJA 2GRVA 2B4LA 1DPPA 4WEDA 2OLBA 3CHGA 3TCFA 3MZBA 5ICQA 4XKPA 3E3KA 4OFOA 3RYBA 3O9PA 4OEUA 1JETA 3DRGA 3LVUA 3ZS6A 1B6HA 1RKMA 1UIUA 2WOPA 1ZTYA 4RA1A 4XKRA 3O6PA 3MVYA 4QFNA 3MW0A 4ONYA
chains in the Genus database with same CATH topology
4OEVA 4PFTA 1XOCA 4ZEIA 4OESA 3T66A 1B3FA 1B3GA 3DP8A 4JSOA 3TCHA 1UQWA 1JEUA 3DRFA 3DRJA 4ZECA 5F1QA 2D5WA 1VR5A 2RKMA 4I9DA 4OFLA 4TOZA 4GF8A 1UIVA 1QKBA 4GL8A 2WOKA 3MZ9A 4XKQA 3MVXA 4ZEDA 5ISUA 4ZEKA 4OERA 1B40A 1OLCA 4QFOA 1OLAA 1B58A 1B3LA 1B3HA 3DRHA 3MVZA 2NOOA 3DRIA 3RQTA 1ZU0A 3MVWA 5KZTA 4QFLA 4QFKA 3DRKA 3TPAA 1B5JA 3RYAA 1DPEA 4ZE9A 3M8UA 3TCGA 1B5HA 3I5OA 4DCXA 4PFUA 5L8DA 1B51A 2WOLA 4QFPA 1B4ZA 1JEVA 4ZEBA 1ZLQA 4OETA 4JSDA 1B0HA 1B05A 4PFWA 1B32A 1B9JA 3RY3A 1B52A 1B4HA 1B7HA 1QKAA 3QIMA 4PFYA 4GFRA 4I8CA 3FTOA 2Z23A 1B5IA 4DCYA 1B1HA 4OFJA 2O7IA 4ZE8A 5HM4B 1B2HA 1B46A 3PAMA 2B4MA 4XKNA 4FAJA 2GRVA 2B4LA 1DPPA 4WEDA 2OLBA 3CHGA 3TCFA 3MZBA 5ICQA 4XKPA 3E3KA 4OFOA 3RYBA 3O9PA 4OEUA 1JETA 3DRGA 3LVUA 3ZS6A 1B6HA 1RKMA 1UIUA 2WOPA 1ZTYA 4RA1A 4XKRA 3O6PA 3MVYA 4QFNA 3MW0A 4ONYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OEV A;  4PFT A;  1XOC A;  4ZEI A;  4OES A;  3T66 A;  1B3F A;  1B3G A;  3DP8 A;  4JSO A;  3TCH A;  1UQW A;  1JEU A;  3DRF A;  3DRJ A;  4ZEC A;  5F1Q A;  2D5W A;  1VR5 A;  2RKM A;  4I9D A;  4OFL A;  4TOZ A;  4GF8 A;  1UIV A;  1QKB A;  4GL8 A;  2WOK A;  3MZ9 A;  4XKQ A;  3MVX A;  4ZED A;  5ISU A;  4ZEK A;  4OER A;  1B40 A;  1OLC A;  4QFO A;  1OLA A;  1B58 A;  1B3L A;  1B3H A;  3DRH A;  3MVZ A;  2NOO A;  3DRI A;  3RQT A;  1ZU0 A;  3MVW A;  5KZT A;  4QFL A;  4QFK A;  3DRK A;  3TPA A;  1B5J A;  3RYA A;  1DPE A;  4ZE9 A;  3M8U A;  3TCG A;  1B5H A;  3I5O A;  4DCX A;  4PFU A;  5L8D A;  1B51 A;  2WOL A;  4QFP A;  1B4Z A;  1JEV A;  4ZEB A;  1ZLQ A;  4OET A;  4JSD A;  1B0H A;  1B05 A;  4PFW A;  1B32 A;  1B9J A;  3RY3 A;  1B52 A;  1B4H A;  1B7H A;  1QKA A;  3QIM A;  4PFY A;  4GFR A;  4I8C A;  3FTO A;  2Z23 A;  1B5I A;  4DCY A;  1B1H A;  4OFJ A;  2O7I A;  4ZE8 A;  5HM4 B;  1B2H A;  1B46 A;  3PAM A;  2B4M A;  4XKN A;  4FAJ A;  2GRV A;  2B4L A;  1DPP A;  4WED A;  2OLB A;  3CHG A;  3TCF A;  3MZB A;  5ICQ A;  4XKP A;  3E3K A;  4OFO A;  3RYB A;  3O9P A;  4OEU A;  1JET A;  3DRG A;  3LVU A;  3ZS6 A;  1B6H A;  1RKM A;  1UIU A;  2WOP A;  1ZTY A;  4RA1 A;  4XKR A;  3O6P A;  3MVY A;  4QFN A;  3MW0 A;  4ONY A; 
#chains in the Genus database with same CATH topology
 4OEV A;  4PFT A;  1XOC A;  4ZEI A;  4OES A;  3T66 A;  1B3F A;  1B3G A;  3DP8 A;  4JSO A;  3TCH A;  1UQW A;  1JEU A;  3DRF A;  3DRJ A;  4ZEC A;  5F1Q A;  2D5W A;  1VR5 A;  2RKM A;  4I9D A;  4OFL A;  4TOZ A;  4GF8 A;  1UIV A;  1QKB A;  4GL8 A;  2WOK A;  3MZ9 A;  4XKQ A;  3MVX A;  4ZED A;  5ISU A;  4ZEK A;  4OER A;  1B40 A;  1OLC A;  4QFO A;  1OLA A;  1B58 A;  1B3L A;  1B3H A;  3DRH A;  3MVZ A;  2NOO A;  3DRI A;  3RQT A;  1ZU0 A;  3MVW A;  5KZT A;  4QFL A;  4QFK A;  3DRK A;  3TPA A;  1B5J A;  3RYA A;  1DPE A;  4ZE9 A;  3M8U A;  3TCG A;  1B5H A;  3I5O A;  4DCX A;  4PFU A;  5L8D A;  1B51 A;  2WOL A;  4QFP A;  1B4Z A;  1JEV A;  4ZEB A;  1ZLQ A;  4OET A;  4JSD A;  1B0H A;  1B05 A;  4PFW A;  1B32 A;  1B9J A;  3RY3 A;  1B52 A;  1B4H A;  1B7H A;  1QKA A;  3QIM A;  4PFY A;  4GFR A;  4I8C A;  3FTO A;  2Z23 A;  1B5I A;  4DCY A;  1B1H A;  4OFJ A;  2O7I A;  4ZE8 A;  5HM4 B;  1B2H A;  1B46 A;  3PAM A;  2B4M A;  4XKN A;  4FAJ A;  2GRV A;  2B4L A;  1DPP A;  4WED A;  2OLB A;  3CHG A;  3TCF A;  3MZB A;  5ICQ A;  4XKP A;  3E3K A;  4OFO A;  3RYB A;  3O9P A;  4OEU A;  1JET A;  3DRG A;  3LVU A;  3ZS6 A;  1B6H A;  1RKM A;  1UIU A;  2WOP A;  1ZTY A;  4RA1 A;  4XKR A;  3O6P A;  3MVY A;  4QFN A;  3MW0 A;  4ONY A; 
#chains in the Genus database with same CATH homology
 4OEV A;  4PFT A;  1XOC A;  4ZEI A;  4OES A;  3T66 A;  1B3F A;  1B3G A;  3DP8 A;  4JSO A;  3TCH A;  1UQW A;  1JEU A;  3DRF A;  3DRJ A;  4ZEC A;  5F1Q A;  2D5W A;  1VR5 A;  2RKM A;  4I9D A;  4OFL A;  4TOZ A;  4GF8 A;  1UIV A;  1QKB A;  4GL8 A;  2WOK A;  3MZ9 A;  4XKQ A;  3MVX A;  4ZED A;  5ISU A;  4ZEK A;  4OER A;  1B40 A;  1OLC A;  4QFO A;  1OLA A;  1B58 A;  1B3L A;  1B3H A;  3DRH A;  3MVZ A;  2NOO A;  3DRI A;  3RQT A;  1ZU0 A;  3MVW A;  5KZT A;  4QFL A;  4QFK A;  3DRK A;  3TPA A;  1B5J A;  3RYA A;  1DPE A;  4ZE9 A;  3M8U A;  3TCG A;  1B5H A;  3I5O A;  4DCX A;  4PFU A;  5L8D A;  1B51 A;  2WOL A;  4QFP A;  1B4Z A;  1JEV A;  4ZEB A;  1ZLQ A;  4OET A;  4JSD A;  1B0H A;  1B05 A;  4PFW A;  1B32 A;  1B9J A;  3RY3 A;  1B52 A;  1B4H A;  1B7H A;  1QKA A;  3QIM A;  4PFY A;  4GFR A;  4I8C A;  3FTO A;  2Z23 A;  1B5I A;  4DCY A;  1B1H A;  4OFJ A;  2O7I A;  4ZE8 A;  5HM4 B;  1B2H A;  1B46 A;  3PAM A;  2B4M A;  4XKN A;  4FAJ A;  2GRV A;  2B4L A;  1DPP A;  4WED A;  2OLB A;  3CHG A;  3TCF A;  3MZB A;  5ICQ A;  4XKP A;  3E3K A;  4OFO A;  3RYB A;  3O9P A;  4OEU A;  1JET A;  3DRG A;  3LVU A;  3ZS6 A;  1B6H A;  1RKM A;  1UIU A;  2WOP A;  1ZTY A;  4RA1 A;  4XKR A;  3O6P A;  3MVY A;  4QFN A;  3MW0 A;  4ONY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...