The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
171
|
sequence length |
559
|
structure length |
559
|
Chain Sequence |
GNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSSAKL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Peptide binding protein
|
| molecule keywords |
Oligopeptide-binding protein oppA
|
| publication title |
Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
pubmed doi rcsb |
| source organism |
Lactococcus lactis
|
| total genus |
171
|
| structure length |
559
|
| sequence length |
559
|
| ec nomenclature | |
| pdb deposition date | 2011-05-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00496 | SBP_bac_5 | Bacterial extracellular solute-binding proteins, family 5 Middle |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Dipeptide-binding Protein; domain 3 | Dipeptide-binding Protein; Domain 3 |
#chains in the Genus database with same CATH superfamily 1OLC A; 2NOO A; 5HM4 B; 4FAJ A; 4ZED A; 1VR5 A; 3MW0 A; 2Z23 A; 4OER A; 4DCY A; 1B5J A; 1B5I A; 1B4H A; 3DRI A; 1B58 A; 4JSO A; 3TCH A; 1B3L A; 1RKM A; 4ZE8 A; 4XKP A; 2OLB A; 3TCG A; 1B5H A; 4WED A; 1OLA A; 1B32 A; 3RYB A; 5F1Q A; 4OET A; 4OFJ A; 1B52 A; 4TOZ A; 1DPE A; 3DRG A; 4ZEC A; 1JET A; 1B51 A; 4QFN A; 2GRV A; 3MVX A; 3E3K A; 2O7I A; 5ISU A; 3LVU A; 1B1H A; 1ZLQ A; 4ONY A; 2WOP A; 4OFL A; 2RKM A; 3RY3 A; 3O6P A; 1XOC A; 3QIM A; 1B6H A; 3MZ9 A; 1QKA A; 4ZE9 A; 1DPP A; 3I5O A; 3ZS6 A; 1UQW A; 3PAM A; 3MZB A; 4OES A; 4JSD A; 3DRJ A; 5ICQ A; 1JEU A; 1B46 A; 4QFO A; 2WOK A; 4QFK A; 3RYA A; 4I9D A; 3CHG A; 1B05 A; 4GL8 A; 3T66 A; 2WOL A; 5L8D A; 5KZT A; 1B3H A; 4OFO A; 1B3G A; 1ZTY A; 1B0H A; 1B7H A; 4ZEB A; 3TPA A; 4PFT A; 2B4L A; 1B9J A; 1QKB A; 4QFL A; 3M8U A; 4PFY A; 4RA1 A; 4QFP A; 3DRH A; 4OEV A; 4XKR A; 4GF8 A; 1B3F A; 3MVY A; 3DP8 A; 3DRF A; 3MVW A; 4ZEK A; 3O9P A; 4XKQ A; 1B40 A; 1JEV A; 4DCX A; 2D5W A; 4ZEI A; 4PFU A; 1B2H A; 3RQT A; 4PFW A; 4XKN A; 1UIU A; 3DRK A; 4I8C A; 1ZU0 A; 1B4Z A; 2B4M A; 3MVZ A; 4GFR A; 3TCF A; 1UIV A; 3FTO A; 4OEU A; #chains in the Genus database with same CATH topology 1OLC A; 2NOO A; 5HM4 B; 4FAJ A; 4ZED A; 1VR5 A; 3MW0 A; 2Z23 A; 4OER A; 4DCY A; 1B5J A; 1B5I A; 1B4H A; 3DRI A; 1B58 A; 4JSO A; 3TCH A; 1B3L A; 1RKM A; 4ZE8 A; 4XKP A; 2OLB A; 3TCG A; 1B5H A; 4WED A; 1OLA A; 1B32 A; 3RYB A; 5F1Q A; 4OET A; 4OFJ A; 1B52 A; 4TOZ A; 1DPE A; 3DRG A; 4ZEC A; 1JET A; 1B51 A; 4QFN A; 2GRV A; 3MVX A; 3E3K A; 2O7I A; 5ISU A; 3LVU A; 1B1H A; 1ZLQ A; 4ONY A; 2WOP A; 4OFL A; 2RKM A; 3RY3 A; 3O6P A; 1XOC A; 3QIM A; 1B6H A; 3MZ9 A; 1QKA A; 4ZE9 A; 1DPP A; 3I5O A; 3ZS6 A; 1UQW A; 3PAM A; 3MZB A; 4OES A; 4JSD A; 3DRJ A; 5ICQ A; 1JEU A; 1B46 A; 4QFO A; 2WOK A; 4QFK A; 3RYA A; 4I9D A; 3CHG A; 1B05 A; 4GL8 A; 3T66 A; 2WOL A; 5L8D A; 5KZT A; 1B3H A; 4OFO A; 1B3G A; 1ZTY A; 1B0H A; 1B7H A; 4ZEB A; 3TPA A; 4PFT A; 2B4L A; 1B9J A; 1QKB A; 4QFL A; 3M8U A; 4PFY A; 4RA1 A; 4QFP A; 3DRH A; 4OEV A; 4XKR A; 4GF8 A; 1B3F A; 3MVY A; 3DP8 A; 3DRF A; 3MVW A; 4ZEK A; 3O9P A; 4XKQ A; 1B40 A; 1JEV A; 4DCX A; 2D5W A; 4ZEI A; 4PFU A; 1B2H A; 3RQT A; 4PFW A; 4XKN A; 1UIU A; 3DRK A; 4I8C A; 1ZU0 A; 1B4Z A; 2B4M A; 3MVZ A; 4GFR A; 3TCF A; 1UIV A; 3FTO A; 4OEU A; #chains in the Genus database with same CATH homology 1OLC A; 2NOO A; 5HM4 B; 4FAJ A; 4ZED A; 1VR5 A; 3MW0 A; 2Z23 A; 4OER A; 4DCY A; 1B5J A; 1B5I A; 1B4H A; 3DRI A; 1B58 A; 4JSO A; 3TCH A; 1B3L A; 1RKM A; 4ZE8 A; 4XKP A; 2OLB A; 3TCG A; 1B5H A; 4WED A; 1OLA A; 1B32 A; 3RYB A; 5F1Q A; 4OET A; 4OFJ A; 1B52 A; 4TOZ A; 1DPE A; 3DRG A; 4ZEC A; 1JET A; 1B51 A; 4QFN A; 2GRV A; 3MVX A; 3E3K A; 2O7I A; 5ISU A; 3LVU A; 1B1H A; 1ZLQ A; 4ONY A; 2WOP A; 4OFL A; 2RKM A; 3RY3 A; 3O6P A; 1XOC A; 3QIM A; 1B6H A; 3MZ9 A; 1QKA A; 4ZE9 A; 1DPP A; 3I5O A; 3ZS6 A; 1UQW A; 3PAM A; 3MZB A; 4OES A; 4JSD A; 3DRJ A; 5ICQ A; 1JEU A; 1B46 A; 4QFO A; 2WOK A; 4QFK A; 3RYA A; 4I9D A; 3CHG A; 1B05 A; 4GL8 A; 3T66 A; 2WOL A; 5L8D A; 5KZT A; 1B3H A; 4OFO A; 1B3G A; 1ZTY A; 1B0H A; 1B7H A; 4ZEB A; 3TPA A; 4PFT A; 2B4L A; 1B9J A; 1QKB A; 4QFL A; 3M8U A; 4PFY A; 4RA1 A; 4QFP A; 3DRH A; 4OEV A; 4XKR A; 4GF8 A; 1B3F A; 3MVY A; 3DP8 A; 3DRF A; 3MVW A; 4ZEK A; 3O9P A; 4XKQ A; 1B40 A; 1JEV A; 4DCX A; 2D5W A; 4ZEI A; 4PFU A; 1B2H A; 3RQT A; 4PFW A; 4XKN A; 1UIU A; 3DRK A; 4I8C A; 1ZU0 A; 1B4Z A; 2B4M A; 3MVZ A; 4GFR A; 3TCF A; 1UIV A; 3FTO A; 4OEU A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
