3RYAA

Lactococcal oppa complexed with slsqlssqs
Total Genus 171
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
171
sequence length
559
structure length
559
Chain Sequence
GNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSSAKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Oligopeptide-binding protein oppA
publication title Importance of a Hydrophobic Pocket for Peptide Binding in Lactococcal OppA.
pubmed doi rcsb
source organism Lactococcus lactis
molecule tags Peptide binding protein
total genus 171
structure length 559
sequence length 559
ec nomenclature
pdb deposition date 2011-05-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 3ryaA02
5KZTA 4PFWA 1B6HA 1UQWA 3TCGA 3FTOA 1XOCA 4ZE9A 4QFOA 4DCYA 2NOOA 4DCXA 3ZS6A 4OFJA 4ZEIA 1B3FA 3QIMA 3RY3A 3E3KA 1JEUA 3T66A 1ZU0A 4I8CA 4ZEDA 5HM4B 1JEVA 1B51A 1B52A 2GRVA 4OETA 3MVYA 4ZEKA 4ONYA 4ZECA 1RKMA 3MVWA 4GFRA 3DRGA 3TPAA 1ZTYA 4I9DA 4OERA 2D5WA 1ZLQA 1JETA 4JSDA 4RA1A 4XKPA 4XKNA 1B5JA 3LVUA 1B46A 2Z23A 4OEVA 2O7IA 3O9PA 4OFOA 1B4ZA 1B3GA 4TOZA 3TCHA 1B58A 5ICQA 3DRIA 3PAMA 3DP8A 1OLAA 1QKAA 4JSOA 2B4MA 2RKMA 1B9JA 4PFUA 3RQTA 3RYAA 2WOKA 4FAJA 5ISUA 4OEUA 4QFLA 4GF8A 1VR5A 1OLCA 4ZE8A 3DRKA 3TCFA 4ZEBA 3I5OA 1UIVA 3RYBA 3DRFA 3DRJA 1QKBA 1DPEA 2WOLA 4PFYA 4GL8A 1UIUA 5F1QA 1B4HA 3O6PA 1B5HA 4WEDA 2WOPA 1B40A 4QFNA 4QFPA 4QFKA 5L8DA 1B7HA 4XKRA 3MVZA 4OFLA 1B32A 4OESA 1B1HA 1B2HA 3CHGA 1B3LA 3MW0A 2OLBA 1B5IA 3MZ9A 3M8UA 3MZBA 1B0HA 4PFTA 2B4LA 4XKQA 1DPPA 1B3HA 3MVXA 1B05A 3DRHA
chains in the Genus database with same CATH superfamily
5KZTA 4PFWA 1B6HA 1UQWA 3TCGA 3FTOA 1XOCA 4ZE9A 4QFOA 4DCYA 2NOOA 4DCXA 3ZS6A 4OFJA 4ZEIA 1B3FA 3QIMA 3RY3A 3E3KA 1JEUA 3T66A 1ZU0A 4I8CA 4ZEDA 5HM4B 1JEVA 1B51A 1B52A 2GRVA 4OETA 3MVYA 4ZEKA 4ONYA 4ZECA 1RKMA 3MVWA 4GFRA 3DRGA 3TPAA 1ZTYA 4I9DA 4OERA 2D5WA 1ZLQA 1JETA 4JSDA 4RA1A 4XKPA 4XKNA 1B5JA 3LVUA 1B46A 2Z23A 4OEVA 2O7IA 3O9PA 4OFOA 1B4ZA 1B3GA 4TOZA 3TCHA 1B58A 5ICQA 3DRIA 3PAMA 3DP8A 1OLAA 1QKAA 4JSOA 2B4MA 2RKMA 1B9JA 4PFUA 3RQTA 3RYAA 2WOKA 4FAJA 5ISUA 4OEUA 4QFLA 4GF8A 1VR5A 1OLCA 4ZE8A 3DRKA 3TCFA 4ZEBA 3I5OA 1UIVA 3RYBA 3DRFA 3DRJA 1QKBA 1DPEA 2WOLA 4PFYA 4GL8A 1UIUA 5F1QA 1B4HA 3O6PA 1B5HA 4WEDA 2WOPA 1B40A 4QFNA 4QFPA 4QFKA 5L8DA 1B7HA 4XKRA 3MVZA 4OFLA 1B32A 4OESA 1B1HA 1B2HA 3CHGA 1B3LA 3MW0A 2OLBA 1B5IA 3MZ9A 3M8UA 3MZBA 1B0HA 4PFTA 2B4LA 4XKQA 1DPPA 1B3HA 3MVXA 1B05A 3DRHA
chains in the Genus database with same CATH topology
5KZTA 4PFWA 1B6HA 1UQWA 3TCGA 3FTOA 1XOCA 4ZE9A 4QFOA 4DCYA 2NOOA 4DCXA 3ZS6A 4OFJA 4ZEIA 1B3FA 3QIMA 3RY3A 3E3KA 1JEUA 3T66A 1ZU0A 4I8CA 4ZEDA 5HM4B 1JEVA 1B51A 1B52A 2GRVA 4OETA 3MVYA 4ZEKA 4ONYA 4ZECA 1RKMA 3MVWA 4GFRA 3DRGA 3TPAA 1ZTYA 4I9DA 4OERA 2D5WA 1ZLQA 1JETA 4JSDA 4RA1A 4XKPA 4XKNA 1B5JA 3LVUA 1B46A 2Z23A 4OEVA 2O7IA 3O9PA 4OFOA 1B4ZA 1B3GA 4TOZA 3TCHA 1B58A 5ICQA 3DRIA 3PAMA 3DP8A 1OLAA 1QKAA 4JSOA 2B4MA 2RKMA 1B9JA 4PFUA 3RQTA 3RYAA 2WOKA 4FAJA 5ISUA 4OEUA 4QFLA 4GF8A 1VR5A 1OLCA 4ZE8A 3DRKA 3TCFA 4ZEBA 3I5OA 1UIVA 3RYBA 3DRFA 3DRJA 1QKBA 1DPEA 2WOLA 4PFYA 4GL8A 1UIUA 5F1QA 1B4HA 3O6PA 1B5HA 4WEDA 2WOPA 1B40A 4QFNA 4QFPA 4QFKA 5L8DA 1B7HA 4XKRA 3MVZA 4OFLA 1B32A 4OESA 1B1HA 1B2HA 3CHGA 1B3LA 3MW0A 2OLBA 1B5IA 3MZ9A 3M8UA 3MZBA 1B0HA 4PFTA 2B4LA 4XKQA 1DPPA 1B3HA 3MVXA 1B05A 3DRHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5KZT A;  4PFW A;  1B6H A;  1UQW A;  3TCG A;  3FTO A;  1XOC A;  4ZE9 A;  4QFO A;  4DCY A;  2NOO A;  4DCX A;  3ZS6 A;  4OFJ A;  4ZEI A;  1B3F A;  3QIM A;  3RY3 A;  3E3K A;  1JEU A;  3T66 A;  1ZU0 A;  4I8C A;  4ZED A;  5HM4 B;  1JEV A;  1B51 A;  1B52 A;  2GRV A;  4OET A;  3MVY A;  4ZEK A;  4ONY A;  4ZEC A;  1RKM A;  3MVW A;  4GFR A;  3DRG A;  3TPA A;  1ZTY A;  4I9D A;  4OER A;  2D5W A;  1ZLQ A;  1JET A;  4JSD A;  4RA1 A;  4XKP A;  4XKN A;  1B5J A;  3LVU A;  1B46 A;  2Z23 A;  4OEV A;  2O7I A;  3O9P A;  4OFO A;  1B4Z A;  1B3G A;  4TOZ A;  3TCH A;  1B58 A;  5ICQ A;  3DRI A;  3PAM A;  3DP8 A;  1OLA A;  1QKA A;  4JSO A;  2B4M A;  2RKM A;  1B9J A;  4PFU A;  3RQT A;  3RYA A;  2WOK A;  4FAJ A;  5ISU A;  4OEU A;  4QFL A;  4GF8 A;  1VR5 A;  1OLC A;  4ZE8 A;  3DRK A;  3TCF A;  4ZEB A;  3I5O A;  1UIV A;  3RYB A;  3DRF A;  3DRJ A;  1QKB A;  1DPE A;  2WOL A;  4PFY A;  4GL8 A;  1UIU A;  5F1Q A;  1B4H A;  3O6P A;  1B5H A;  4WED A;  2WOP A;  1B40 A;  4QFN A;  4QFP A;  4QFK A;  5L8D A;  1B7H A;  4XKR A;  3MVZ A;  4OFL A;  1B32 A;  4OES A;  1B1H A;  1B2H A;  3CHG A;  1B3L A;  3MW0 A;  2OLB A;  1B5I A;  3MZ9 A;  3M8U A;  3MZB A;  1B0H A;  4PFT A;  2B4L A;  4XKQ A;  1DPP A;  1B3H A;  3MVX A;  1B05 A;  3DRH A; 
#chains in the Genus database with same CATH topology
 5KZT A;  4PFW A;  1B6H A;  1UQW A;  3TCG A;  3FTO A;  1XOC A;  4ZE9 A;  4QFO A;  4DCY A;  2NOO A;  4DCX A;  3ZS6 A;  4OFJ A;  4ZEI A;  1B3F A;  3QIM A;  3RY3 A;  3E3K A;  1JEU A;  3T66 A;  1ZU0 A;  4I8C A;  4ZED A;  5HM4 B;  1JEV A;  1B51 A;  1B52 A;  2GRV A;  4OET A;  3MVY A;  4ZEK A;  4ONY A;  4ZEC A;  1RKM A;  3MVW A;  4GFR A;  3DRG A;  3TPA A;  1ZTY A;  4I9D A;  4OER A;  2D5W A;  1ZLQ A;  1JET A;  4JSD A;  4RA1 A;  4XKP A;  4XKN A;  1B5J A;  3LVU A;  1B46 A;  2Z23 A;  4OEV A;  2O7I A;  3O9P A;  4OFO A;  1B4Z A;  1B3G A;  4TOZ A;  3TCH A;  1B58 A;  5ICQ A;  3DRI A;  3PAM A;  3DP8 A;  1OLA A;  1QKA A;  4JSO A;  2B4M A;  2RKM A;  1B9J A;  4PFU A;  3RQT A;  3RYA A;  2WOK A;  4FAJ A;  5ISU A;  4OEU A;  4QFL A;  4GF8 A;  1VR5 A;  1OLC A;  4ZE8 A;  3DRK A;  3TCF A;  4ZEB A;  3I5O A;  1UIV A;  3RYB A;  3DRF A;  3DRJ A;  1QKB A;  1DPE A;  2WOL A;  4PFY A;  4GL8 A;  1UIU A;  5F1Q A;  1B4H A;  3O6P A;  1B5H A;  4WED A;  2WOP A;  1B40 A;  4QFN A;  4QFP A;  4QFK A;  5L8D A;  1B7H A;  4XKR A;  3MVZ A;  4OFL A;  1B32 A;  4OES A;  1B1H A;  1B2H A;  3CHG A;  1B3L A;  3MW0 A;  2OLB A;  1B5I A;  3MZ9 A;  3M8U A;  3MZB A;  1B0H A;  4PFT A;  2B4L A;  4XKQ A;  1DPP A;  1B3H A;  3MVX A;  1B05 A;  3DRH A; 
#chains in the Genus database with same CATH homology
 5KZT A;  4PFW A;  1B6H A;  1UQW A;  3TCG A;  3FTO A;  1XOC A;  4ZE9 A;  4QFO A;  4DCY A;  2NOO A;  4DCX A;  3ZS6 A;  4OFJ A;  4ZEI A;  1B3F A;  3QIM A;  3RY3 A;  3E3K A;  1JEU A;  3T66 A;  1ZU0 A;  4I8C A;  4ZED A;  5HM4 B;  1JEV A;  1B51 A;  1B52 A;  2GRV A;  4OET A;  3MVY A;  4ZEK A;  4ONY A;  4ZEC A;  1RKM A;  3MVW A;  4GFR A;  3DRG A;  3TPA A;  1ZTY A;  4I9D A;  4OER A;  2D5W A;  1ZLQ A;  1JET A;  4JSD A;  4RA1 A;  4XKP A;  4XKN A;  1B5J A;  3LVU A;  1B46 A;  2Z23 A;  4OEV A;  2O7I A;  3O9P A;  4OFO A;  1B4Z A;  1B3G A;  4TOZ A;  3TCH A;  1B58 A;  5ICQ A;  3DRI A;  3PAM A;  3DP8 A;  1OLA A;  1QKA A;  4JSO A;  2B4M A;  2RKM A;  1B9J A;  4PFU A;  3RQT A;  3RYA A;  2WOK A;  4FAJ A;  5ISU A;  4OEU A;  4QFL A;  4GF8 A;  1VR5 A;  1OLC A;  4ZE8 A;  3DRK A;  3TCF A;  4ZEB A;  3I5O A;  1UIV A;  3RYB A;  3DRF A;  3DRJ A;  1QKB A;  1DPE A;  2WOL A;  4PFY A;  4GL8 A;  1UIU A;  5F1Q A;  1B4H A;  3O6P A;  1B5H A;  4WED A;  2WOP A;  1B40 A;  4QFN A;  4QFP A;  4QFK A;  5L8D A;  1B7H A;  4XKR A;  3MVZ A;  4OFL A;  1B32 A;  4OES A;  1B1H A;  1B2H A;  3CHG A;  1B3L A;  3MW0 A;  2OLB A;  1B5I A;  3MZ9 A;  3M8U A;  3MZB A;  1B0H A;  4PFT A;  2B4L A;  4XKQ A;  1DPP A;  1B3H A;  3MVX A;  1B05 A;  3DRH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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