3DRIA

Crystal structure of lactococcal oppa co-crystallized with an octamer peptide in an open conformation
Total Genus 193
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
193
sequence length
559
structure length
559
Chain Sequence
LKAGNFDVAYQNPDKAIKGGNLKVAYQSDSPMKAQWLSGLSNDATFATMSGPGGGQDGLFFTDSGFKFIKGGAADVALDKESKTATITLRKDLKWSDGSEVTAKDYEFTYETIANPAYGSDRWTDSLANIVGLSDYHTGKAKTISGITFPDGENGKVIKVQFKEMKPGMTQSGNGYFLETVAPYQYLKDVAPKDLASSPKTTTKPLVTGPFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQYKQVKNLKGYKVLGQQAMYISLMYYNLGHYDAKNSINVQDRKTPLQDQNVRQAIGYARNVAEVDNKFSNGLSTPANSLIPPIFKQFTSSSVKGYEKQDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLYNGKLMEFNSWVDHMTTPPGANDWDITDGSWSLASEPSQQDLFSAAAPYNFGHFNDSEITKDLNDIDSAKSENPTYRKAAFVKYQEDMNKKAYVIPTNFMLNYTPVNKRVVGMTLDYGAMNTWSEIGVSS
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Oligopeptide-binding protein oppA
publication title The structural basis for peptide selection by the transport receptor OppA
pubmed doi rcsb
source organism Lactococcus lactis
molecule tags Peptide binding protein
total genus 193
structure length 559
sequence length 559
ec nomenclature
pdb deposition date 2008-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 3driA02
3PAMA 1XOCA 4I8CA 4ZE9A 1B4ZA 4PFUA 4ONYA 1RKMA 3DRJA 1ZTYA 3FTOA 3M8UA 3MVXA 4OERA 4XKPA 1B32A 2WOLA 1UIVA 1B2HA 1VR5A 1JETA 2WOPA 4DCYA 1B05A 4ZEDA 4OFJA 5ISUA 1B52A 3ZS6A 1B46A 3DRGA 1B3LA 1QKBA 1B51A 3DP8A 4RA1A 4OEUA 4OETA 2B4MA 3QIMA 2NOOA 1B3GA 3MZ9A 1ZLQA 2GRVA 4OEVA 4ZEIA 4GL8A 1B3FA 2RKMA 4QFOA 1B5IA 1B6HA 1JEVA 1B5JA 4JSOA 3T66A 1B1HA 4OFLA 3E3KA 1B0HA 1B3HA 5F1QA 2OLBA 4GFRA 1B9JA 3DRKA 4PFYA 3TCHA 1UIUA 2B4LA 4FAJA 4ZEKA 3TCGA 3DRIA 4PFTA 1B4HA 5KZTA 3O9PA 4QFLA 4PFWA 4TOZA 3RYBA 1ZU0A 4QFPA 4ZECA 4OFOA 4ZEBA 2D5WA 4XKNA 3TCFA 3MVWA 3MVYA 1B40A 3RY3A 3LVUA 3MZBA 3MVZA 5HM4B 4GF8A 1DPEA 5L8DA 3RYAA 3CHGA 3RQTA 1B7HA 1DPPA 3TPAA 1OLAA 1QKAA 1B58A 4QFKA 4XKQA 2Z23A 2WOKA 4I9DA 4OESA 4WEDA 3O6PA 1OLCA 1JEUA 4XKRA 1UQWA 4QFNA 4DCXA 3DRHA 3DRFA 3I5OA 4ZE8A 5ICQA 1B5HA 3MW0A 2O7IA 4JSDA
chains in the Genus database with same CATH superfamily
3PAMA 1XOCA 4I8CA 4ZE9A 1B4ZA 4PFUA 4ONYA 1RKMA 3DRJA 1ZTYA 3FTOA 3M8UA 3MVXA 4OERA 4XKPA 1B32A 2WOLA 1UIVA 1B2HA 1VR5A 1JETA 2WOPA 4DCYA 1B05A 4ZEDA 4OFJA 5ISUA 1B52A 3ZS6A 1B46A 3DRGA 1B3LA 1QKBA 1B51A 3DP8A 4RA1A 4OEUA 4OETA 2B4MA 3QIMA 2NOOA 1B3GA 3MZ9A 1ZLQA 2GRVA 4OEVA 4ZEIA 4GL8A 1B3FA 2RKMA 4QFOA 1B5IA 1B6HA 1JEVA 1B5JA 4JSOA 3T66A 1B1HA 4OFLA 3E3KA 1B0HA 1B3HA 5F1QA 2OLBA 4GFRA 1B9JA 3DRKA 4PFYA 3TCHA 1UIUA 2B4LA 4FAJA 4ZEKA 3TCGA 3DRIA 4PFTA 1B4HA 5KZTA 3O9PA 4QFLA 4PFWA 4TOZA 3RYBA 1ZU0A 4QFPA 4ZECA 4OFOA 4ZEBA 2D5WA 4XKNA 3TCFA 3MVWA 3MVYA 1B40A 3RY3A 3LVUA 3MZBA 3MVZA 5HM4B 4GF8A 1DPEA 5L8DA 3RYAA 3CHGA 3RQTA 1B7HA 1DPPA 3TPAA 1OLAA 1QKAA 1B58A 4QFKA 4XKQA 2Z23A 2WOKA 4I9DA 4OESA 4WEDA 3O6PA 1OLCA 1JEUA 4XKRA 1UQWA 4QFNA 4DCXA 3DRHA 3DRFA 3I5OA 4ZE8A 5ICQA 1B5HA 3MW0A 2O7IA 4JSDA
chains in the Genus database with same CATH topology
3PAMA 1XOCA 4I8CA 4ZE9A 1B4ZA 4PFUA 4ONYA 1RKMA 3DRJA 1ZTYA 3FTOA 3M8UA 3MVXA 4OERA 4XKPA 1B32A 2WOLA 1UIVA 1B2HA 1VR5A 1JETA 2WOPA 4DCYA 1B05A 4ZEDA 4OFJA 5ISUA 1B52A 3ZS6A 1B46A 3DRGA 1B3LA 1QKBA 1B51A 3DP8A 4RA1A 4OEUA 4OETA 2B4MA 3QIMA 2NOOA 1B3GA 3MZ9A 1ZLQA 2GRVA 4OEVA 4ZEIA 4GL8A 1B3FA 2RKMA 4QFOA 1B5IA 1B6HA 1JEVA 1B5JA 4JSOA 3T66A 1B1HA 4OFLA 3E3KA 1B0HA 1B3HA 5F1QA 2OLBA 4GFRA 1B9JA 3DRKA 4PFYA 3TCHA 1UIUA 2B4LA 4FAJA 4ZEKA 3TCGA 3DRIA 4PFTA 1B4HA 5KZTA 3O9PA 4QFLA 4PFWA 4TOZA 3RYBA 1ZU0A 4QFPA 4ZECA 4OFOA 4ZEBA 2D5WA 4XKNA 3TCFA 3MVWA 3MVYA 1B40A 3RY3A 3LVUA 3MZBA 3MVZA 5HM4B 4GF8A 1DPEA 5L8DA 3RYAA 3CHGA 3RQTA 1B7HA 1DPPA 3TPAA 1OLAA 1QKAA 1B58A 4QFKA 4XKQA 2Z23A 2WOKA 4I9DA 4OESA 4WEDA 3O6PA 1OLCA 1JEUA 4XKRA 1UQWA 4QFNA 4DCXA 3DRHA 3DRFA 3I5OA 4ZE8A 5ICQA 1B5HA 3MW0A 2O7IA 4JSDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PAM A;  1XOC A;  4I8C A;  4ZE9 A;  1B4Z A;  4PFU A;  4ONY A;  1RKM A;  3DRJ A;  1ZTY A;  3FTO A;  3M8U A;  3MVX A;  4OER A;  4XKP A;  1B32 A;  2WOL A;  1UIV A;  1B2H A;  1VR5 A;  1JET A;  2WOP A;  4DCY A;  1B05 A;  4ZED A;  4OFJ A;  5ISU A;  1B52 A;  3ZS6 A;  1B46 A;  3DRG A;  1B3L A;  1QKB A;  1B51 A;  3DP8 A;  4RA1 A;  4OEU A;  4OET A;  2B4M A;  3QIM A;  2NOO A;  1B3G A;  3MZ9 A;  1ZLQ A;  2GRV A;  4OEV A;  4ZEI A;  4GL8 A;  1B3F A;  2RKM A;  4QFO A;  1B5I A;  1B6H A;  1JEV A;  1B5J A;  4JSO A;  3T66 A;  1B1H A;  4OFL A;  3E3K A;  1B0H A;  1B3H A;  5F1Q A;  2OLB A;  4GFR A;  1B9J A;  3DRK A;  4PFY A;  3TCH A;  1UIU A;  2B4L A;  4FAJ A;  4ZEK A;  3TCG A;  3DRI A;  4PFT A;  1B4H A;  5KZT A;  3O9P A;  4QFL A;  4PFW A;  4TOZ A;  3RYB A;  1ZU0 A;  4QFP A;  4ZEC A;  4OFO A;  4ZEB A;  2D5W A;  4XKN A;  3TCF A;  3MVW A;  3MVY A;  1B40 A;  3RY3 A;  3LVU A;  3MZB A;  3MVZ A;  5HM4 B;  4GF8 A;  1DPE A;  5L8D A;  3RYA A;  3CHG A;  3RQT A;  1B7H A;  1DPP A;  3TPA A;  1OLA A;  1QKA A;  1B58 A;  4QFK A;  4XKQ A;  2Z23 A;  2WOK A;  4I9D A;  4OES A;  4WED A;  3O6P A;  1OLC A;  1JEU A;  4XKR A;  1UQW A;  4QFN A;  4DCX A;  3DRH A;  3DRF A;  3I5O A;  4ZE8 A;  5ICQ A;  1B5H A;  3MW0 A;  2O7I A;  4JSD A; 
#chains in the Genus database with same CATH topology
 3PAM A;  1XOC A;  4I8C A;  4ZE9 A;  1B4Z A;  4PFU A;  4ONY A;  1RKM A;  3DRJ A;  1ZTY A;  3FTO A;  3M8U A;  3MVX A;  4OER A;  4XKP A;  1B32 A;  2WOL A;  1UIV A;  1B2H A;  1VR5 A;  1JET A;  2WOP A;  4DCY A;  1B05 A;  4ZED A;  4OFJ A;  5ISU A;  1B52 A;  3ZS6 A;  1B46 A;  3DRG A;  1B3L A;  1QKB A;  1B51 A;  3DP8 A;  4RA1 A;  4OEU A;  4OET A;  2B4M A;  3QIM A;  2NOO A;  1B3G A;  3MZ9 A;  1ZLQ A;  2GRV A;  4OEV A;  4ZEI A;  4GL8 A;  1B3F A;  2RKM A;  4QFO A;  1B5I A;  1B6H A;  1JEV A;  1B5J A;  4JSO A;  3T66 A;  1B1H A;  4OFL A;  3E3K A;  1B0H A;  1B3H A;  5F1Q A;  2OLB A;  4GFR A;  1B9J A;  3DRK A;  4PFY A;  3TCH A;  1UIU A;  2B4L A;  4FAJ A;  4ZEK A;  3TCG A;  3DRI A;  4PFT A;  1B4H A;  5KZT A;  3O9P A;  4QFL A;  4PFW A;  4TOZ A;  3RYB A;  1ZU0 A;  4QFP A;  4ZEC A;  4OFO A;  4ZEB A;  2D5W A;  4XKN A;  3TCF A;  3MVW A;  3MVY A;  1B40 A;  3RY3 A;  3LVU A;  3MZB A;  3MVZ A;  5HM4 B;  4GF8 A;  1DPE A;  5L8D A;  3RYA A;  3CHG A;  3RQT A;  1B7H A;  1DPP A;  3TPA A;  1OLA A;  1QKA A;  1B58 A;  4QFK A;  4XKQ A;  2Z23 A;  2WOK A;  4I9D A;  4OES A;  4WED A;  3O6P A;  1OLC A;  1JEU A;  4XKR A;  1UQW A;  4QFN A;  4DCX A;  3DRH A;  3DRF A;  3I5O A;  4ZE8 A;  5ICQ A;  1B5H A;  3MW0 A;  2O7I A;  4JSD A; 
#chains in the Genus database with same CATH homology
 3PAM A;  1XOC A;  4I8C A;  4ZE9 A;  1B4Z A;  4PFU A;  4ONY A;  1RKM A;  3DRJ A;  1ZTY A;  3FTO A;  3M8U A;  3MVX A;  4OER A;  4XKP A;  1B32 A;  2WOL A;  1UIV A;  1B2H A;  1VR5 A;  1JET A;  2WOP A;  4DCY A;  1B05 A;  4ZED A;  4OFJ A;  5ISU A;  1B52 A;  3ZS6 A;  1B46 A;  3DRG A;  1B3L A;  1QKB A;  1B51 A;  3DP8 A;  4RA1 A;  4OEU A;  4OET A;  2B4M A;  3QIM A;  2NOO A;  1B3G A;  3MZ9 A;  1ZLQ A;  2GRV A;  4OEV A;  4ZEI A;  4GL8 A;  1B3F A;  2RKM A;  4QFO A;  1B5I A;  1B6H A;  1JEV A;  1B5J A;  4JSO A;  3T66 A;  1B1H A;  4OFL A;  3E3K A;  1B0H A;  1B3H A;  5F1Q A;  2OLB A;  4GFR A;  1B9J A;  3DRK A;  4PFY A;  3TCH A;  1UIU A;  2B4L A;  4FAJ A;  4ZEK A;  3TCG A;  3DRI A;  4PFT A;  1B4H A;  5KZT A;  3O9P A;  4QFL A;  4PFW A;  4TOZ A;  3RYB A;  1ZU0 A;  4QFP A;  4ZEC A;  4OFO A;  4ZEB A;  2D5W A;  4XKN A;  3TCF A;  3MVW A;  3MVY A;  1B40 A;  3RY3 A;  3LVU A;  3MZB A;  3MVZ A;  5HM4 B;  4GF8 A;  1DPE A;  5L8D A;  3RYA A;  3CHG A;  3RQT A;  1B7H A;  1DPP A;  3TPA A;  1OLA A;  1QKA A;  1B58 A;  4QFK A;  4XKQ A;  2Z23 A;  2WOK A;  4I9D A;  4OES A;  4WED A;  3O6P A;  1OLC A;  1JEU A;  4XKR A;  1UQW A;  4QFN A;  4DCX A;  3DRH A;  3DRF A;  3I5O A;  4ZE8 A;  5ICQ A;  1B5H A;  3MW0 A;  2O7I A;  4JSD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...