2WOLA

Clavulanic acid biosynthesis oligopeptide binding protein 2
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
553
structure length
553
Chain Sequence
PAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
publication title Crystal Structures of an Oligopeptide-Binding Protein from the Biosynthetic Pathway of the Beta-Lactamase Inhibitor Clavulanic Acid.
pubmed doi rcsb
source organism Streptomyces clavuligerus
molecule tags Peptide binding protein
total genus 182
structure length 553
sequence length 553
ec nomenclature
pdb deposition date 2009-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 2wolA02
1DPPA 4ONYA 1B40A 4PFYA 1B5IA 5KZTA 1B0HA 4XKPA 1B51A 2B4MA 3TCFA 1B3FA 4OESA 4WEDA 4TOZA 4ZE8A 3DRGA 3RQTA 3DRKA 3CHGA 3DRFA 1B2HA 1DPEA 1JEVA 1B5HA 4OFLA 3O6PA 3MZBA 3O9PA 5HM4B 3E3KA 3MVYA 3FTOA 1OLCA 4ZEIA 4OEUA 2Z23A 5L8DA 2B4LA 4I9DA 1B3HA 2D5WA 3T66A 3DP8A 4I8CA 3I5OA 2O7IA 1B6HA 1UIVA 1B7HA 3TCHA 4OFOA 4GL8A 3MVZA 1XOCA 2RKMA 3PAMA 1B3GA 4PFWA 1JEUA 3DRJA 4QFOA 4XKQA 1UIUA 3TCGA 4RA1A 1B4ZA 4ZE9A 1JETA 1B05A 3QIMA 1B46A 2WOPA 1QKAA 1VR5A 3M8UA 2OLBA 4PFUA 4ZEBA 1B52A 4QFNA 4JSOA 3DRHA 4GF8A 4PFTA 4DCXA 4OFJA 3MVWA 5ICQA 1OLAA 1RKMA 4XKNA 2WOKA 3MVXA 2WOLA 4QFLA 3RYBA 1B5JA 1UQWA 3MW0A 2NOOA 1ZTYA 4ZECA 2GRVA 4OERA 4QFKA 1B32A 1B3LA 1B1HA 1B9JA 4OEVA 1B4HA 4OETA 1ZU0A 1QKBA 5ISUA 3ZS6A 5F1QA 3LVUA 4QFPA 4ZEKA 4DCYA 3DRIA 4FAJA 1B58A 3RYAA 4JSDA 4XKRA 3MZ9A 1ZLQA 3RY3A 3TPAA 4ZEDA 4GFRA
chains in the Genus database with same CATH superfamily
1DPPA 4ONYA 1B40A 4PFYA 1B5IA 5KZTA 1B0HA 4XKPA 1B51A 2B4MA 3TCFA 1B3FA 4OESA 4WEDA 4TOZA 4ZE8A 3DRGA 3RQTA 3DRKA 3CHGA 3DRFA 1B2HA 1DPEA 1JEVA 1B5HA 4OFLA 3O6PA 3MZBA 3O9PA 5HM4B 3E3KA 3MVYA 3FTOA 1OLCA 4ZEIA 4OEUA 2Z23A 5L8DA 2B4LA 4I9DA 1B3HA 2D5WA 3T66A 3DP8A 4I8CA 3I5OA 2O7IA 1B6HA 1UIVA 1B7HA 3TCHA 4OFOA 4GL8A 3MVZA 1XOCA 2RKMA 3PAMA 1B3GA 4PFWA 1JEUA 3DRJA 4QFOA 4XKQA 1UIUA 3TCGA 4RA1A 1B4ZA 4ZE9A 1JETA 1B05A 3QIMA 1B46A 2WOPA 1QKAA 1VR5A 3M8UA 2OLBA 4PFUA 4ZEBA 1B52A 4QFNA 4JSOA 3DRHA 4GF8A 4PFTA 4DCXA 4OFJA 3MVWA 5ICQA 1OLAA 1RKMA 4XKNA 2WOKA 3MVXA 2WOLA 4QFLA 3RYBA 1B5JA 1UQWA 3MW0A 2NOOA 1ZTYA 4ZECA 2GRVA 4OERA 4QFKA 1B32A 1B3LA 1B1HA 1B9JA 4OEVA 1B4HA 4OETA 1ZU0A 1QKBA 5ISUA 3ZS6A 5F1QA 3LVUA 4QFPA 4ZEKA 4DCYA 3DRIA 4FAJA 1B58A 3RYAA 4JSDA 4XKRA 3MZ9A 1ZLQA 3RY3A 3TPAA 4ZEDA 4GFRA
chains in the Genus database with same CATH topology
1DPPA 4ONYA 1B40A 4PFYA 1B5IA 5KZTA 1B0HA 4XKPA 1B51A 2B4MA 3TCFA 1B3FA 4OESA 4WEDA 4TOZA 4ZE8A 3DRGA 3RQTA 3DRKA 3CHGA 3DRFA 1B2HA 1DPEA 1JEVA 1B5HA 4OFLA 3O6PA 3MZBA 3O9PA 5HM4B 3E3KA 3MVYA 3FTOA 1OLCA 4ZEIA 4OEUA 2Z23A 5L8DA 2B4LA 4I9DA 1B3HA 2D5WA 3T66A 3DP8A 4I8CA 3I5OA 2O7IA 1B6HA 1UIVA 1B7HA 3TCHA 4OFOA 4GL8A 3MVZA 1XOCA 2RKMA 3PAMA 1B3GA 4PFWA 1JEUA 3DRJA 4QFOA 4XKQA 1UIUA 3TCGA 4RA1A 1B4ZA 4ZE9A 1JETA 1B05A 3QIMA 1B46A 2WOPA 1QKAA 1VR5A 3M8UA 2OLBA 4PFUA 4ZEBA 1B52A 4QFNA 4JSOA 3DRHA 4GF8A 4PFTA 4DCXA 4OFJA 3MVWA 5ICQA 1OLAA 1RKMA 4XKNA 2WOKA 3MVXA 2WOLA 4QFLA 3RYBA 1B5JA 1UQWA 3MW0A 2NOOA 1ZTYA 4ZECA 2GRVA 4OERA 4QFKA 1B32A 1B3LA 1B1HA 1B9JA 4OEVA 1B4HA 4OETA 1ZU0A 1QKBA 5ISUA 3ZS6A 5F1QA 3LVUA 4QFPA 4ZEKA 4DCYA 3DRIA 4FAJA 1B58A 3RYAA 4JSDA 4XKRA 3MZ9A 1ZLQA 3RY3A 3TPAA 4ZEDA 4GFRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DPP A;  4ONY A;  1B40 A;  4PFY A;  1B5I A;  5KZT A;  1B0H A;  4XKP A;  1B51 A;  2B4M A;  3TCF A;  1B3F A;  4OES A;  4WED A;  4TOZ A;  4ZE8 A;  3DRG A;  3RQT A;  3DRK A;  3CHG A;  3DRF A;  1B2H A;  1DPE A;  1JEV A;  1B5H A;  4OFL A;  3O6P A;  3MZB A;  3O9P A;  5HM4 B;  3E3K A;  3MVY A;  3FTO A;  1OLC A;  4ZEI A;  4OEU A;  2Z23 A;  5L8D A;  2B4L A;  4I9D A;  1B3H A;  2D5W A;  3T66 A;  3DP8 A;  4I8C A;  3I5O A;  2O7I A;  1B6H A;  1UIV A;  1B7H A;  3TCH A;  4OFO A;  4GL8 A;  3MVZ A;  1XOC A;  2RKM A;  3PAM A;  1B3G A;  4PFW A;  1JEU A;  3DRJ A;  4QFO A;  4XKQ A;  1UIU A;  3TCG A;  4RA1 A;  1B4Z A;  4ZE9 A;  1JET A;  1B05 A;  3QIM A;  1B46 A;  2WOP A;  1QKA A;  1VR5 A;  3M8U A;  2OLB A;  4PFU A;  4ZEB A;  1B52 A;  4QFN A;  4JSO A;  3DRH A;  4GF8 A;  4PFT A;  4DCX A;  4OFJ A;  3MVW A;  5ICQ A;  1OLA A;  1RKM A;  4XKN A;  2WOK A;  3MVX A;  2WOL A;  4QFL A;  3RYB A;  1B5J A;  1UQW A;  3MW0 A;  2NOO A;  1ZTY A;  4ZEC A;  2GRV A;  4OER A;  4QFK A;  1B32 A;  1B3L A;  1B1H A;  1B9J A;  4OEV A;  1B4H A;  4OET A;  1ZU0 A;  1QKB A;  5ISU A;  3ZS6 A;  5F1Q A;  3LVU A;  4QFP A;  4ZEK A;  4DCY A;  3DRI A;  4FAJ A;  1B58 A;  3RYA A;  4JSD A;  4XKR A;  3MZ9 A;  1ZLQ A;  3RY3 A;  3TPA A;  4ZED A;  4GFR A; 
#chains in the Genus database with same CATH topology
 1DPP A;  4ONY A;  1B40 A;  4PFY A;  1B5I A;  5KZT A;  1B0H A;  4XKP A;  1B51 A;  2B4M A;  3TCF A;  1B3F A;  4OES A;  4WED A;  4TOZ A;  4ZE8 A;  3DRG A;  3RQT A;  3DRK A;  3CHG A;  3DRF A;  1B2H A;  1DPE A;  1JEV A;  1B5H A;  4OFL A;  3O6P A;  3MZB A;  3O9P A;  5HM4 B;  3E3K A;  3MVY A;  3FTO A;  1OLC A;  4ZEI A;  4OEU A;  2Z23 A;  5L8D A;  2B4L A;  4I9D A;  1B3H A;  2D5W A;  3T66 A;  3DP8 A;  4I8C A;  3I5O A;  2O7I A;  1B6H A;  1UIV A;  1B7H A;  3TCH A;  4OFO A;  4GL8 A;  3MVZ A;  1XOC A;  2RKM A;  3PAM A;  1B3G A;  4PFW A;  1JEU A;  3DRJ A;  4QFO A;  4XKQ A;  1UIU A;  3TCG A;  4RA1 A;  1B4Z A;  4ZE9 A;  1JET A;  1B05 A;  3QIM A;  1B46 A;  2WOP A;  1QKA A;  1VR5 A;  3M8U A;  2OLB A;  4PFU A;  4ZEB A;  1B52 A;  4QFN A;  4JSO A;  3DRH A;  4GF8 A;  4PFT A;  4DCX A;  4OFJ A;  3MVW A;  5ICQ A;  1OLA A;  1RKM A;  4XKN A;  2WOK A;  3MVX A;  2WOL A;  4QFL A;  3RYB A;  1B5J A;  1UQW A;  3MW0 A;  2NOO A;  1ZTY A;  4ZEC A;  2GRV A;  4OER A;  4QFK A;  1B32 A;  1B3L A;  1B1H A;  1B9J A;  4OEV A;  1B4H A;  4OET A;  1ZU0 A;  1QKB A;  5ISU A;  3ZS6 A;  5F1Q A;  3LVU A;  4QFP A;  4ZEK A;  4DCY A;  3DRI A;  4FAJ A;  1B58 A;  3RYA A;  4JSD A;  4XKR A;  3MZ9 A;  1ZLQ A;  3RY3 A;  3TPA A;  4ZED A;  4GFR A; 
#chains in the Genus database with same CATH homology
 1DPP A;  4ONY A;  1B40 A;  4PFY A;  1B5I A;  5KZT A;  1B0H A;  4XKP A;  1B51 A;  2B4M A;  3TCF A;  1B3F A;  4OES A;  4WED A;  4TOZ A;  4ZE8 A;  3DRG A;  3RQT A;  3DRK A;  3CHG A;  3DRF A;  1B2H A;  1DPE A;  1JEV A;  1B5H A;  4OFL A;  3O6P A;  3MZB A;  3O9P A;  5HM4 B;  3E3K A;  3MVY A;  3FTO A;  1OLC A;  4ZEI A;  4OEU A;  2Z23 A;  5L8D A;  2B4L A;  4I9D A;  1B3H A;  2D5W A;  3T66 A;  3DP8 A;  4I8C A;  3I5O A;  2O7I A;  1B6H A;  1UIV A;  1B7H A;  3TCH A;  4OFO A;  4GL8 A;  3MVZ A;  1XOC A;  2RKM A;  3PAM A;  1B3G A;  4PFW A;  1JEU A;  3DRJ A;  4QFO A;  4XKQ A;  1UIU A;  3TCG A;  4RA1 A;  1B4Z A;  4ZE9 A;  1JET A;  1B05 A;  3QIM A;  1B46 A;  2WOP A;  1QKA A;  1VR5 A;  3M8U A;  2OLB A;  4PFU A;  4ZEB A;  1B52 A;  4QFN A;  4JSO A;  3DRH A;  4GF8 A;  4PFT A;  4DCX A;  4OFJ A;  3MVW A;  5ICQ A;  1OLA A;  1RKM A;  4XKN A;  2WOK A;  3MVX A;  2WOL A;  4QFL A;  3RYB A;  1B5J A;  1UQW A;  3MW0 A;  2NOO A;  1ZTY A;  4ZEC A;  2GRV A;  4OER A;  4QFK A;  1B32 A;  1B3L A;  1B1H A;  1B9J A;  4OEV A;  1B4H A;  4OET A;  1ZU0 A;  1QKB A;  5ISU A;  3ZS6 A;  5F1Q A;  3LVU A;  4QFP A;  4ZEK A;  4DCY A;  3DRI A;  4FAJ A;  1B58 A;  3RYA A;  4JSD A;  4XKR A;  3MZ9 A;  1ZLQ A;  3RY3 A;  3TPA A;  4ZED A;  4GFR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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