2WOPA

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
554
structure length
554
Chain Sequence
RPAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal Structures of an Oligopeptide-Binding Protein from the Biosynthetic Pathway of the Beta-Lactamase Inhibitor Clavulanic Acid.
pubmed doi rcsb
molecule tags Peptide binding protein
source organism Streptomyces clavuligerus
molecule keywords CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
total genus 183
structure length 554
sequence length 554
ec nomenclature
pdb deposition date 2009-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 2wopA02
3LVUA 2NOOA 3MVZA 5KZTA 2D5WA 2B4MA 4PFYA 5F1QA 4XKNA 3E3KA 1VR5A 1DPEA 2OLBA 1B6HA 2WOLA 4OESA 2RKMA 1DPPA 1QKBA 5ISUA 3O9PA 4XKPA 4ZEIA 1OLCA 1JEVA 4OERA 4PFUA 3DP8A 4OFJA 4OETA 4FAJA 4RA1A 3DRHA 1JEUA 3FTOA 1ZLQA 1UIUA 1ZTYA 3DRKA 1B5HA 1B46A 3TCHA 1B32A 2O7IA 3DRGA 2GRVA 3O6PA 4I8CA 4QFNA 1B3GA 1B58A 4QFKA 4GL8A 1B40A 4ZE9A 1B51A 4OFLA 4QFPA 1B2HA 3QIMA 3MVYA 1ZU0A 4DCXA 3TPAA 3PAMA 1B3LA 4OEUA 1B9JA 4ZE8A 4PFWA 4GFRA 5HM4B 3MVXA 4WEDA 4JSOA 2Z23A 4PFTA 3DRIA 1B0HA 1UQWA 4GF8A 2WOPA 1B7HA 3TCGA 3MW0A 3MVWA 4I9DA 3MZBA 3TCFA 1B05A 4ONYA 3MZ9A 2B4LA 4ZEKA 3RQTA 3DRJA 1B3HA 3RY3A 3ZS6A 3RYAA 1B52A 2WOKA 1JETA 1B4HA 4TOZA 4DCYA 3T66A 3DRFA 4JSDA 4OFOA 1B1HA 4QFLA 4XKQA 1QKAA 3CHGA 1OLAA 5ICQA 4ZEBA 4OEVA 4XKRA 5L8DA 1XOCA 1B5IA 1B4ZA 1B3FA 1RKMA 1B5JA 4ZEDA 3RYBA 1UIVA 3I5OA 3M8UA 4ZECA 4QFOA
chains in the Genus database with same CATH superfamily
3LVUA 2NOOA 3MVZA 5KZTA 2D5WA 2B4MA 4PFYA 5F1QA 4XKNA 3E3KA 1VR5A 1DPEA 2OLBA 1B6HA 2WOLA 4OESA 2RKMA 1DPPA 1QKBA 5ISUA 3O9PA 4XKPA 4ZEIA 1OLCA 1JEVA 4OERA 4PFUA 3DP8A 4OFJA 4OETA 4FAJA 4RA1A 3DRHA 1JEUA 3FTOA 1ZLQA 1UIUA 1ZTYA 3DRKA 1B5HA 1B46A 3TCHA 1B32A 2O7IA 3DRGA 2GRVA 3O6PA 4I8CA 4QFNA 1B3GA 1B58A 4QFKA 4GL8A 1B40A 4ZE9A 1B51A 4OFLA 4QFPA 1B2HA 3QIMA 3MVYA 1ZU0A 4DCXA 3TPAA 3PAMA 1B3LA 4OEUA 1B9JA 4ZE8A 4PFWA 4GFRA 5HM4B 3MVXA 4WEDA 4JSOA 2Z23A 4PFTA 3DRIA 1B0HA 1UQWA 4GF8A 2WOPA 1B7HA 3TCGA 3MW0A 3MVWA 4I9DA 3MZBA 3TCFA 1B05A 4ONYA 3MZ9A 2B4LA 4ZEKA 3RQTA 3DRJA 1B3HA 3RY3A 3ZS6A 3RYAA 1B52A 2WOKA 1JETA 1B4HA 4TOZA 4DCYA 3T66A 3DRFA 4JSDA 4OFOA 1B1HA 4QFLA 4XKQA 1QKAA 3CHGA 1OLAA 5ICQA 4ZEBA 4OEVA 4XKRA 5L8DA 1XOCA 1B5IA 1B4ZA 1B3FA 1RKMA 1B5JA 4ZEDA 3RYBA 1UIVA 3I5OA 3M8UA 4ZECA 4QFOA
chains in the Genus database with same CATH topology
3LVUA 2NOOA 3MVZA 5KZTA 2D5WA 2B4MA 4PFYA 5F1QA 4XKNA 3E3KA 1VR5A 1DPEA 2OLBA 1B6HA 2WOLA 4OESA 2RKMA 1DPPA 1QKBA 5ISUA 3O9PA 4XKPA 4ZEIA 1OLCA 1JEVA 4OERA 4PFUA 3DP8A 4OFJA 4OETA 4FAJA 4RA1A 3DRHA 1JEUA 3FTOA 1ZLQA 1UIUA 1ZTYA 3DRKA 1B5HA 1B46A 3TCHA 1B32A 2O7IA 3DRGA 2GRVA 3O6PA 4I8CA 4QFNA 1B3GA 1B58A 4QFKA 4GL8A 1B40A 4ZE9A 1B51A 4OFLA 4QFPA 1B2HA 3QIMA 3MVYA 1ZU0A 4DCXA 3TPAA 3PAMA 1B3LA 4OEUA 1B9JA 4ZE8A 4PFWA 4GFRA 5HM4B 3MVXA 4WEDA 4JSOA 2Z23A 4PFTA 3DRIA 1B0HA 1UQWA 4GF8A 2WOPA 1B7HA 3TCGA 3MW0A 3MVWA 4I9DA 3MZBA 3TCFA 1B05A 4ONYA 3MZ9A 2B4LA 4ZEKA 3RQTA 3DRJA 1B3HA 3RY3A 3ZS6A 3RYAA 1B52A 2WOKA 1JETA 1B4HA 4TOZA 4DCYA 3T66A 3DRFA 4JSDA 4OFOA 1B1HA 4QFLA 4XKQA 1QKAA 3CHGA 1OLAA 5ICQA 4ZEBA 4OEVA 4XKRA 5L8DA 1XOCA 1B5IA 1B4ZA 1B3FA 1RKMA 1B5JA 4ZEDA 3RYBA 1UIVA 3I5OA 3M8UA 4ZECA 4QFOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LVU A;  2NOO A;  3MVZ A;  5KZT A;  2D5W A;  2B4M A;  4PFY A;  5F1Q A;  4XKN A;  3E3K A;  1VR5 A;  1DPE A;  2OLB A;  1B6H A;  2WOL A;  4OES A;  2RKM A;  1DPP A;  1QKB A;  5ISU A;  3O9P A;  4XKP A;  4ZEI A;  1OLC A;  1JEV A;  4OER A;  4PFU A;  3DP8 A;  4OFJ A;  4OET A;  4FAJ A;  4RA1 A;  3DRH A;  1JEU A;  3FTO A;  1ZLQ A;  1UIU A;  1ZTY A;  3DRK A;  1B5H A;  1B46 A;  3TCH A;  1B32 A;  2O7I A;  3DRG A;  2GRV A;  3O6P A;  4I8C A;  4QFN A;  1B3G A;  1B58 A;  4QFK A;  4GL8 A;  1B40 A;  4ZE9 A;  1B51 A;  4OFL A;  4QFP A;  1B2H A;  3QIM A;  3MVY A;  1ZU0 A;  4DCX A;  3TPA A;  3PAM A;  1B3L A;  4OEU A;  1B9J A;  4ZE8 A;  4PFW A;  4GFR A;  5HM4 B;  3MVX A;  4WED A;  4JSO A;  2Z23 A;  4PFT A;  3DRI A;  1B0H A;  1UQW A;  4GF8 A;  2WOP A;  1B7H A;  3TCG A;  3MW0 A;  3MVW A;  4I9D A;  3MZB A;  3TCF A;  1B05 A;  4ONY A;  3MZ9 A;  2B4L A;  4ZEK A;  3RQT A;  3DRJ A;  1B3H A;  3RY3 A;  3ZS6 A;  3RYA A;  1B52 A;  2WOK A;  1JET A;  1B4H A;  4TOZ A;  4DCY A;  3T66 A;  3DRF A;  4JSD A;  4OFO A;  1B1H A;  4QFL A;  4XKQ A;  1QKA A;  3CHG A;  1OLA A;  5ICQ A;  4ZEB A;  4OEV A;  4XKR A;  5L8D A;  1XOC A;  1B5I A;  1B4Z A;  1B3F A;  1RKM A;  1B5J A;  4ZED A;  3RYB A;  1UIV A;  3I5O A;  3M8U A;  4ZEC A;  4QFO A; 
#chains in the Genus database with same CATH topology
 3LVU A;  2NOO A;  3MVZ A;  5KZT A;  2D5W A;  2B4M A;  4PFY A;  5F1Q A;  4XKN A;  3E3K A;  1VR5 A;  1DPE A;  2OLB A;  1B6H A;  2WOL A;  4OES A;  2RKM A;  1DPP A;  1QKB A;  5ISU A;  3O9P A;  4XKP A;  4ZEI A;  1OLC A;  1JEV A;  4OER A;  4PFU A;  3DP8 A;  4OFJ A;  4OET A;  4FAJ A;  4RA1 A;  3DRH A;  1JEU A;  3FTO A;  1ZLQ A;  1UIU A;  1ZTY A;  3DRK A;  1B5H A;  1B46 A;  3TCH A;  1B32 A;  2O7I A;  3DRG A;  2GRV A;  3O6P A;  4I8C A;  4QFN A;  1B3G A;  1B58 A;  4QFK A;  4GL8 A;  1B40 A;  4ZE9 A;  1B51 A;  4OFL A;  4QFP A;  1B2H A;  3QIM A;  3MVY A;  1ZU0 A;  4DCX A;  3TPA A;  3PAM A;  1B3L A;  4OEU A;  1B9J A;  4ZE8 A;  4PFW A;  4GFR A;  5HM4 B;  3MVX A;  4WED A;  4JSO A;  2Z23 A;  4PFT A;  3DRI A;  1B0H A;  1UQW A;  4GF8 A;  2WOP A;  1B7H A;  3TCG A;  3MW0 A;  3MVW A;  4I9D A;  3MZB A;  3TCF A;  1B05 A;  4ONY A;  3MZ9 A;  2B4L A;  4ZEK A;  3RQT A;  3DRJ A;  1B3H A;  3RY3 A;  3ZS6 A;  3RYA A;  1B52 A;  2WOK A;  1JET A;  1B4H A;  4TOZ A;  4DCY A;  3T66 A;  3DRF A;  4JSD A;  4OFO A;  1B1H A;  4QFL A;  4XKQ A;  1QKA A;  3CHG A;  1OLA A;  5ICQ A;  4ZEB A;  4OEV A;  4XKR A;  5L8D A;  1XOC A;  1B5I A;  1B4Z A;  1B3F A;  1RKM A;  1B5J A;  4ZED A;  3RYB A;  1UIV A;  3I5O A;  3M8U A;  4ZEC A;  4QFO A; 
#chains in the Genus database with same CATH homology
 3LVU A;  2NOO A;  3MVZ A;  5KZT A;  2D5W A;  2B4M A;  4PFY A;  5F1Q A;  4XKN A;  3E3K A;  1VR5 A;  1DPE A;  2OLB A;  1B6H A;  2WOL A;  4OES A;  2RKM A;  1DPP A;  1QKB A;  5ISU A;  3O9P A;  4XKP A;  4ZEI A;  1OLC A;  1JEV A;  4OER A;  4PFU A;  3DP8 A;  4OFJ A;  4OET A;  4FAJ A;  4RA1 A;  3DRH A;  1JEU A;  3FTO A;  1ZLQ A;  1UIU A;  1ZTY A;  3DRK A;  1B5H A;  1B46 A;  3TCH A;  1B32 A;  2O7I A;  3DRG A;  2GRV A;  3O6P A;  4I8C A;  4QFN A;  1B3G A;  1B58 A;  4QFK A;  4GL8 A;  1B40 A;  4ZE9 A;  1B51 A;  4OFL A;  4QFP A;  1B2H A;  3QIM A;  3MVY A;  1ZU0 A;  4DCX A;  3TPA A;  3PAM A;  1B3L A;  4OEU A;  1B9J A;  4ZE8 A;  4PFW A;  4GFR A;  5HM4 B;  3MVX A;  4WED A;  4JSO A;  2Z23 A;  4PFT A;  3DRI A;  1B0H A;  1UQW A;  4GF8 A;  2WOP A;  1B7H A;  3TCG A;  3MW0 A;  3MVW A;  4I9D A;  3MZB A;  3TCF A;  1B05 A;  4ONY A;  3MZ9 A;  2B4L A;  4ZEK A;  3RQT A;  3DRJ A;  1B3H A;  3RY3 A;  3ZS6 A;  3RYA A;  1B52 A;  2WOK A;  1JET A;  1B4H A;  4TOZ A;  4DCY A;  3T66 A;  3DRF A;  4JSD A;  4OFO A;  1B1H A;  4QFL A;  4XKQ A;  1QKA A;  3CHG A;  1OLA A;  5ICQ A;  4ZEB A;  4OEV A;  4XKR A;  5L8D A;  1XOC A;  1B5I A;  1B4Z A;  1B3F A;  1RKM A;  1B5J A;  4ZED A;  3RYB A;  1UIV A;  3I5O A;  3M8U A;  4ZEC A;  4QFO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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