2WOPA

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine
Total Genus 183
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
183
sequence length
554
structure length
554
Chain Sequence
RPAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
publication title Crystal Structures of an Oligopeptide-Binding Protein from the Biosynthetic Pathway of the Beta-Lactamase Inhibitor Clavulanic Acid.
pubmed doi rcsb
source organism Streptomyces clavuligerus
molecule tags Peptide binding protein
total genus 183
structure length 554
sequence length 554
ec nomenclature
pdb deposition date 2009-07-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00496 SBP_bac_5 Bacterial extracellular solute-binding proteins, family 5 Middle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 2wopA02
3DRKA 4PFTA 3MZBA 1XOCA 4OERA 3MZ9A 4PFYA 3I5OA 4OFLA 4QFKA 1B2HA 1B1HA 2WOPA 1B3HA 4XKRA 1B3LA 1B52A 1B32A 3DRHA 3TPAA 4XKNA 4ZEDA 4PFWA 3TCFA 5ICQA 3TCGA 4TOZA 3DP8A 5L8DA 4OESA 3RYBA 3RYAA 1B3FA 4QFLA 1QKBA 4OETA 4DCYA 2GRVA 1OLAA 3CHGA 4OFOA 4XKQA 3MW0A 2B4LA 4OEVA 1ZU0A 4RA1A 4DCXA 1B0HA 1B51A 4I9DA 4JSDA 2WOKA 4FAJA 1B5IA 4ONYA 2D5WA 2OLBA 1OLCA 3FTOA 3ZS6A 1B40A 3MVZA 4ZE9A 3LVUA 1JEVA 2O7IA 4XKPA 1UIVA 3DRJA 4ZEKA 1RKMA 1DPEA 1VR5A 4ZEBA 1B3GA 3MVYA 4QFPA 4QFOA 3O9PA 1ZLQA 1B5JA 3MVWA 1ZTYA 4WEDA 5F1QA 3PAMA 4JSOA 4GF8A 1DPPA 1B4ZA 3RY3A 4I8CA 1B4HA 2B4MA 4OFJA 1JEUA 5ISUA 4OEUA 3DRFA 3QIMA 3RQTA 1QKAA 3E3KA 1B5HA 3TCHA 5HM4B 2NOOA 3M8UA 3DRGA 3O6PA 2RKMA 5KZTA 1JETA 3MVXA 4QFNA 2WOLA 1B9JA 1B6HA 2Z23A 4GFRA 4PFUA 4ZE8A 3DRIA 4ZEIA 1B05A 1B46A 1UIUA 4GL8A 4ZECA 1B58A 3T66A 1UQWA 1B7HA
chains in the Genus database with same CATH superfamily
3DRKA 4PFTA 3MZBA 1XOCA 4OERA 3MZ9A 4PFYA 3I5OA 4OFLA 4QFKA 1B2HA 1B1HA 2WOPA 1B3HA 4XKRA 1B3LA 1B52A 1B32A 3DRHA 3TPAA 4XKNA 4ZEDA 4PFWA 3TCFA 5ICQA 3TCGA 4TOZA 3DP8A 5L8DA 4OESA 3RYBA 3RYAA 1B3FA 4QFLA 1QKBA 4OETA 4DCYA 2GRVA 1OLAA 3CHGA 4OFOA 4XKQA 3MW0A 2B4LA 4OEVA 1ZU0A 4RA1A 4DCXA 1B0HA 1B51A 4I9DA 4JSDA 2WOKA 4FAJA 1B5IA 4ONYA 2D5WA 2OLBA 1OLCA 3FTOA 3ZS6A 1B40A 3MVZA 4ZE9A 3LVUA 1JEVA 2O7IA 4XKPA 1UIVA 3DRJA 4ZEKA 1RKMA 1DPEA 1VR5A 4ZEBA 1B3GA 3MVYA 4QFPA 4QFOA 3O9PA 1ZLQA 1B5JA 3MVWA 1ZTYA 4WEDA 5F1QA 3PAMA 4JSOA 4GF8A 1DPPA 1B4ZA 3RY3A 4I8CA 1B4HA 2B4MA 4OFJA 1JEUA 5ISUA 4OEUA 3DRFA 3QIMA 3RQTA 1QKAA 3E3KA 1B5HA 3TCHA 5HM4B 2NOOA 3M8UA 3DRGA 3O6PA 2RKMA 5KZTA 1JETA 3MVXA 4QFNA 2WOLA 1B9JA 1B6HA 2Z23A 4GFRA 4PFUA 4ZE8A 3DRIA 4ZEIA 1B05A 1B46A 1UIUA 4GL8A 4ZECA 1B58A 3T66A 1UQWA 1B7HA
chains in the Genus database with same CATH topology
3DRKA 4PFTA 3MZBA 1XOCA 4OERA 3MZ9A 4PFYA 3I5OA 4OFLA 4QFKA 1B2HA 1B1HA 2WOPA 1B3HA 4XKRA 1B3LA 1B52A 1B32A 3DRHA 3TPAA 4XKNA 4ZEDA 4PFWA 3TCFA 5ICQA 3TCGA 4TOZA 3DP8A 5L8DA 4OESA 3RYBA 3RYAA 1B3FA 4QFLA 1QKBA 4OETA 4DCYA 2GRVA 1OLAA 3CHGA 4OFOA 4XKQA 3MW0A 2B4LA 4OEVA 1ZU0A 4RA1A 4DCXA 1B0HA 1B51A 4I9DA 4JSDA 2WOKA 4FAJA 1B5IA 4ONYA 2D5WA 2OLBA 1OLCA 3FTOA 3ZS6A 1B40A 3MVZA 4ZE9A 3LVUA 1JEVA 2O7IA 4XKPA 1UIVA 3DRJA 4ZEKA 1RKMA 1DPEA 1VR5A 4ZEBA 1B3GA 3MVYA 4QFPA 4QFOA 3O9PA 1ZLQA 1B5JA 3MVWA 1ZTYA 4WEDA 5F1QA 3PAMA 4JSOA 4GF8A 1DPPA 1B4ZA 3RY3A 4I8CA 1B4HA 2B4MA 4OFJA 1JEUA 5ISUA 4OEUA 3DRFA 3QIMA 3RQTA 1QKAA 3E3KA 1B5HA 3TCHA 5HM4B 2NOOA 3M8UA 3DRGA 3O6PA 2RKMA 5KZTA 1JETA 3MVXA 4QFNA 2WOLA 1B9JA 1B6HA 2Z23A 4GFRA 4PFUA 4ZE8A 3DRIA 4ZEIA 1B05A 1B46A 1UIUA 4GL8A 4ZECA 1B58A 3T66A 1UQWA 1B7HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DRK A;  4PFT A;  3MZB A;  1XOC A;  4OER A;  3MZ9 A;  4PFY A;  3I5O A;  4OFL A;  4QFK A;  1B2H A;  1B1H A;  2WOP A;  1B3H A;  4XKR A;  1B3L A;  1B52 A;  1B32 A;  3DRH A;  3TPA A;  4XKN A;  4ZED A;  4PFW A;  3TCF A;  5ICQ A;  3TCG A;  4TOZ A;  3DP8 A;  5L8D A;  4OES A;  3RYB A;  3RYA A;  1B3F A;  4QFL A;  1QKB A;  4OET A;  4DCY A;  2GRV A;  1OLA A;  3CHG A;  4OFO A;  4XKQ A;  3MW0 A;  2B4L A;  4OEV A;  1ZU0 A;  4RA1 A;  4DCX A;  1B0H A;  1B51 A;  4I9D A;  4JSD A;  2WOK A;  4FAJ A;  1B5I A;  4ONY A;  2D5W A;  2OLB A;  1OLC A;  3FTO A;  3ZS6 A;  1B40 A;  3MVZ A;  4ZE9 A;  3LVU A;  1JEV A;  2O7I A;  4XKP A;  1UIV A;  3DRJ A;  4ZEK A;  1RKM A;  1DPE A;  1VR5 A;  4ZEB A;  1B3G A;  3MVY A;  4QFP A;  4QFO A;  3O9P A;  1ZLQ A;  1B5J A;  3MVW A;  1ZTY A;  4WED A;  5F1Q A;  3PAM A;  4JSO A;  4GF8 A;  1DPP A;  1B4Z A;  3RY3 A;  4I8C A;  1B4H A;  2B4M A;  4OFJ A;  1JEU A;  5ISU A;  4OEU A;  3DRF A;  3QIM A;  3RQT A;  1QKA A;  3E3K A;  1B5H A;  3TCH A;  5HM4 B;  2NOO A;  3M8U A;  3DRG A;  3O6P A;  2RKM A;  5KZT A;  1JET A;  3MVX A;  4QFN A;  2WOL A;  1B9J A;  1B6H A;  2Z23 A;  4GFR A;  4PFU A;  4ZE8 A;  3DRI A;  4ZEI A;  1B05 A;  1B46 A;  1UIU A;  4GL8 A;  4ZEC A;  1B58 A;  3T66 A;  1UQW A;  1B7H A; 
#chains in the Genus database with same CATH topology
 3DRK A;  4PFT A;  3MZB A;  1XOC A;  4OER A;  3MZ9 A;  4PFY A;  3I5O A;  4OFL A;  4QFK A;  1B2H A;  1B1H A;  2WOP A;  1B3H A;  4XKR A;  1B3L A;  1B52 A;  1B32 A;  3DRH A;  3TPA A;  4XKN A;  4ZED A;  4PFW A;  3TCF A;  5ICQ A;  3TCG A;  4TOZ A;  3DP8 A;  5L8D A;  4OES A;  3RYB A;  3RYA A;  1B3F A;  4QFL A;  1QKB A;  4OET A;  4DCY A;  2GRV A;  1OLA A;  3CHG A;  4OFO A;  4XKQ A;  3MW0 A;  2B4L A;  4OEV A;  1ZU0 A;  4RA1 A;  4DCX A;  1B0H A;  1B51 A;  4I9D A;  4JSD A;  2WOK A;  4FAJ A;  1B5I A;  4ONY A;  2D5W A;  2OLB A;  1OLC A;  3FTO A;  3ZS6 A;  1B40 A;  3MVZ A;  4ZE9 A;  3LVU A;  1JEV A;  2O7I A;  4XKP A;  1UIV A;  3DRJ A;  4ZEK A;  1RKM A;  1DPE A;  1VR5 A;  4ZEB A;  1B3G A;  3MVY A;  4QFP A;  4QFO A;  3O9P A;  1ZLQ A;  1B5J A;  3MVW A;  1ZTY A;  4WED A;  5F1Q A;  3PAM A;  4JSO A;  4GF8 A;  1DPP A;  1B4Z A;  3RY3 A;  4I8C A;  1B4H A;  2B4M A;  4OFJ A;  1JEU A;  5ISU A;  4OEU A;  3DRF A;  3QIM A;  3RQT A;  1QKA A;  3E3K A;  1B5H A;  3TCH A;  5HM4 B;  2NOO A;  3M8U A;  3DRG A;  3O6P A;  2RKM A;  5KZT A;  1JET A;  3MVX A;  4QFN A;  2WOL A;  1B9J A;  1B6H A;  2Z23 A;  4GFR A;  4PFU A;  4ZE8 A;  3DRI A;  4ZEI A;  1B05 A;  1B46 A;  1UIU A;  4GL8 A;  4ZEC A;  1B58 A;  3T66 A;  1UQW A;  1B7H A; 
#chains in the Genus database with same CATH homology
 3DRK A;  4PFT A;  3MZB A;  1XOC A;  4OER A;  3MZ9 A;  4PFY A;  3I5O A;  4OFL A;  4QFK A;  1B2H A;  1B1H A;  2WOP A;  1B3H A;  4XKR A;  1B3L A;  1B52 A;  1B32 A;  3DRH A;  3TPA A;  4XKN A;  4ZED A;  4PFW A;  3TCF A;  5ICQ A;  3TCG A;  4TOZ A;  3DP8 A;  5L8D A;  4OES A;  3RYB A;  3RYA A;  1B3F A;  4QFL A;  1QKB A;  4OET A;  4DCY A;  2GRV A;  1OLA A;  3CHG A;  4OFO A;  4XKQ A;  3MW0 A;  2B4L A;  4OEV A;  1ZU0 A;  4RA1 A;  4DCX A;  1B0H A;  1B51 A;  4I9D A;  4JSD A;  2WOK A;  4FAJ A;  1B5I A;  4ONY A;  2D5W A;  2OLB A;  1OLC A;  3FTO A;  3ZS6 A;  1B40 A;  3MVZ A;  4ZE9 A;  3LVU A;  1JEV A;  2O7I A;  4XKP A;  1UIV A;  3DRJ A;  4ZEK A;  1RKM A;  1DPE A;  1VR5 A;  4ZEB A;  1B3G A;  3MVY A;  4QFP A;  4QFO A;  3O9P A;  1ZLQ A;  1B5J A;  3MVW A;  1ZTY A;  4WED A;  5F1Q A;  3PAM A;  4JSO A;  4GF8 A;  1DPP A;  1B4Z A;  3RY3 A;  4I8C A;  1B4H A;  2B4M A;  4OFJ A;  1JEU A;  5ISU A;  4OEU A;  3DRF A;  3QIM A;  3RQT A;  1QKA A;  3E3K A;  1B5H A;  3TCH A;  5HM4 B;  2NOO A;  3M8U A;  3DRG A;  3O6P A;  2RKM A;  5KZT A;  1JET A;  3MVX A;  4QFN A;  2WOL A;  1B9J A;  1B6H A;  2Z23 A;  4GFR A;  4PFU A;  4ZE8 A;  3DRI A;  4ZEI A;  1B05 A;  1B46 A;  1UIU A;  4GL8 A;  4ZEC A;  1B58 A;  3T66 A;  1UQW A;  1B7H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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