3LVUA

Crystal structure of abc transporter, periplasmic substrate-binding protein spo2066 from silicibacter pomeroyi
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
258
structure length
258
Chain Sequence
SNAGMTGFVINTRRAPFDDWRLREALLLAFNFEFINDTVTGGVMPRITSYFSGTDLAYRPGTASGREAELLAPFAADLPPGTLEGYALPQGDGTARNRTNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKVDNAQYTARVAELDFDLTPFRRDLSLSPGNEQRLYWGSHSAGQPGTRNLMGAASPAIDAMIDRMLAATTEDELTAATRALDRVLTAGRYVIPIWR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords ABC transporter, periplasmic substrate-binding protein
publication title Crystal structure of ABC transporter, periplasmic substrate-binding protein SPO2066 from Silicibacter pomeroyi
rcsb
source organism Silicibacter pomeroyi
molecule tags Transport protein
total genus 84
structure length 258
sequence length 258
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2010-02-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.105.10 Alpha Beta Roll Dipeptide-binding Protein; domain 3 Dipeptide-binding Protein; Domain 3 3lvuA00
4ZECA 5KZTA 1JETA 1JEVA 3RY3A 1JEUA 1B5JA 1QKAA 4JSOA 4OERA 1QKBA 3QIMA 4GL8A 3MZBA 3E3KA 1B3GA 3MVXA 4QFKA 1B52A 1VR5A 1B4HA 3FTOA 1B58A 1UIUA 4OFJA 1ZU0A 3DRIA 3DP8A 3DRFA 4I9DA 4DCYA 1B5HA 1B0HA 2WOPA 3DRKA 4QFLA 4XKNA 1B7HA 3MW0A 1B46A 3DRJA 2Z23A 4WEDA 4ZEDA 4OETA 1B32A 1OLCA 4TOZA 4ZE9A 1OLAA 4PFYA 4OEUA 4RA1A 1B2HA 3T66A 4PFWA 4GF8A 3TCHA 4FAJA 4DCXA 1UIVA 3I5OA 4JSDA 4ZEBA 4XKPA 4OFOA 4QFNA 3MVZA 1B1HA 4GFRA 5ISUA 4QFPA 1DPEA 2B4MA 1B3HA 2OLBA 3O9PA 1B51A 3M8UA 4XKRA 2WOLA 5ICQA 4OFLA 4ZEIA 3LVUA 3TCFA 3TCGA 3CHGA 4PFUA 2D5WA 3O6PA 5F1QA 5L8DA 4ZE8A 3MVYA 3MVWA 1RKMA 1B9JA 2RKMA 3ZS6A 1ZTYA 3DRHA 5HM4B 3MZ9A 3TPAA 3RQTA 3PAMA 1XOCA 1B05A 4PFTA 3RYBA 1B6HA 1B5IA 4QFOA 1B4ZA 2WOKA 2NOOA 2B4LA 4XKQA 4ZEKA 4I8CA 2O7IA 4ONYA 3RYAA 1B3FA 2GRVA 4OEVA 1B40A 1UQWA 3DRGA 4OESA 1ZLQA 1B3LA 1DPPA
chains in the Genus database with same CATH superfamily
4ZECA 5KZTA 1JETA 1JEVA 3RY3A 1JEUA 1B5JA 1QKAA 4JSOA 4OERA 1QKBA 3QIMA 4GL8A 3MZBA 3E3KA 1B3GA 3MVXA 4QFKA 1B52A 1VR5A 1B4HA 3FTOA 1B58A 1UIUA 4OFJA 1ZU0A 3DRIA 3DP8A 3DRFA 4I9DA 4DCYA 1B5HA 1B0HA 2WOPA 3DRKA 4QFLA 4XKNA 1B7HA 3MW0A 1B46A 3DRJA 2Z23A 4WEDA 4ZEDA 4OETA 1B32A 1OLCA 4TOZA 4ZE9A 1OLAA 4PFYA 4OEUA 4RA1A 1B2HA 3T66A 4PFWA 4GF8A 3TCHA 4FAJA 4DCXA 1UIVA 3I5OA 4JSDA 4ZEBA 4XKPA 4OFOA 4QFNA 3MVZA 1B1HA 4GFRA 5ISUA 4QFPA 1DPEA 2B4MA 1B3HA 2OLBA 3O9PA 1B51A 3M8UA 4XKRA 2WOLA 5ICQA 4OFLA 4ZEIA 3LVUA 3TCFA 3TCGA 3CHGA 4PFUA 2D5WA 3O6PA 5F1QA 5L8DA 4ZE8A 3MVYA 3MVWA 1RKMA 1B9JA 2RKMA 3ZS6A 1ZTYA 3DRHA 5HM4B 3MZ9A 3TPAA 3RQTA 3PAMA 1XOCA 1B05A 4PFTA 3RYBA 1B6HA 1B5IA 4QFOA 1B4ZA 2WOKA 2NOOA 2B4LA 4XKQA 4ZEKA 4I8CA 2O7IA 4ONYA 3RYAA 1B3FA 2GRVA 4OEVA 1B40A 1UQWA 3DRGA 4OESA 1ZLQA 1B3LA 1DPPA
chains in the Genus database with same CATH topology
4ZECA 5KZTA 1JETA 1JEVA 3RY3A 1JEUA 1B5JA 1QKAA 4JSOA 4OERA 1QKBA 3QIMA 4GL8A 3MZBA 3E3KA 1B3GA 3MVXA 4QFKA 1B52A 1VR5A 1B4HA 3FTOA 1B58A 1UIUA 4OFJA 1ZU0A 3DRIA 3DP8A 3DRFA 4I9DA 4DCYA 1B5HA 1B0HA 2WOPA 3DRKA 4QFLA 4XKNA 1B7HA 3MW0A 1B46A 3DRJA 2Z23A 4WEDA 4ZEDA 4OETA 1B32A 1OLCA 4TOZA 4ZE9A 1OLAA 4PFYA 4OEUA 4RA1A 1B2HA 3T66A 4PFWA 4GF8A 3TCHA 4FAJA 4DCXA 1UIVA 3I5OA 4JSDA 4ZEBA 4XKPA 4OFOA 4QFNA 3MVZA 1B1HA 4GFRA 5ISUA 4QFPA 1DPEA 2B4MA 1B3HA 2OLBA 3O9PA 1B51A 3M8UA 4XKRA 2WOLA 5ICQA 4OFLA 4ZEIA 3LVUA 3TCFA 3TCGA 3CHGA 4PFUA 2D5WA 3O6PA 5F1QA 5L8DA 4ZE8A 3MVYA 3MVWA 1RKMA 1B9JA 2RKMA 3ZS6A 1ZTYA 3DRHA 5HM4B 3MZ9A 3TPAA 3RQTA 3PAMA 1XOCA 1B05A 4PFTA 3RYBA 1B6HA 1B5IA 4QFOA 1B4ZA 2WOKA 2NOOA 2B4LA 4XKQA 4ZEKA 4I8CA 2O7IA 4ONYA 3RYAA 1B3FA 2GRVA 4OEVA 1B40A 1UQWA 3DRGA 4OESA 1ZLQA 1B3LA 1DPPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ZEC A;  5KZT A;  1JET A;  1JEV A;  3RY3 A;  1JEU A;  1B5J A;  1QKA A;  4JSO A;  4OER A;  1QKB A;  3QIM A;  4GL8 A;  3MZB A;  3E3K A;  1B3G A;  3MVX A;  4QFK A;  1B52 A;  1VR5 A;  1B4H A;  3FTO A;  1B58 A;  1UIU A;  4OFJ A;  1ZU0 A;  3DRI A;  3DP8 A;  3DRF A;  4I9D A;  4DCY A;  1B5H A;  1B0H A;  2WOP A;  3DRK A;  4QFL A;  4XKN A;  1B7H A;  3MW0 A;  1B46 A;  3DRJ A;  2Z23 A;  4WED A;  4ZED A;  4OET A;  1B32 A;  1OLC A;  4TOZ A;  4ZE9 A;  1OLA A;  4PFY A;  4OEU A;  4RA1 A;  1B2H A;  3T66 A;  4PFW A;  4GF8 A;  3TCH A;  4FAJ A;  4DCX A;  1UIV A;  3I5O A;  4JSD A;  4ZEB A;  4XKP A;  4OFO A;  4QFN A;  3MVZ A;  1B1H A;  4GFR A;  5ISU A;  4QFP A;  1DPE A;  2B4M A;  1B3H A;  2OLB A;  3O9P A;  1B51 A;  3M8U A;  4XKR A;  2WOL A;  5ICQ A;  4OFL A;  4ZEI A;  3LVU A;  3TCF A;  3TCG A;  3CHG A;  4PFU A;  2D5W A;  3O6P A;  5F1Q A;  5L8D A;  4ZE8 A;  3MVY A;  3MVW A;  1RKM A;  1B9J A;  2RKM A;  3ZS6 A;  1ZTY A;  3DRH A;  5HM4 B;  3MZ9 A;  3TPA A;  3RQT A;  3PAM A;  1XOC A;  1B05 A;  4PFT A;  3RYB A;  1B6H A;  1B5I A;  4QFO A;  1B4Z A;  2WOK A;  2NOO A;  2B4L A;  4XKQ A;  4ZEK A;  4I8C A;  2O7I A;  4ONY A;  3RYA A;  1B3F A;  2GRV A;  4OEV A;  1B40 A;  1UQW A;  3DRG A;  4OES A;  1ZLQ A;  1B3L A;  1DPP A; 
#chains in the Genus database with same CATH topology
 4ZEC A;  5KZT A;  1JET A;  1JEV A;  3RY3 A;  1JEU A;  1B5J A;  1QKA A;  4JSO A;  4OER A;  1QKB A;  3QIM A;  4GL8 A;  3MZB A;  3E3K A;  1B3G A;  3MVX A;  4QFK A;  1B52 A;  1VR5 A;  1B4H A;  3FTO A;  1B58 A;  1UIU A;  4OFJ A;  1ZU0 A;  3DRI A;  3DP8 A;  3DRF A;  4I9D A;  4DCY A;  1B5H A;  1B0H A;  2WOP A;  3DRK A;  4QFL A;  4XKN A;  1B7H A;  3MW0 A;  1B46 A;  3DRJ A;  2Z23 A;  4WED A;  4ZED A;  4OET A;  1B32 A;  1OLC A;  4TOZ A;  4ZE9 A;  1OLA A;  4PFY A;  4OEU A;  4RA1 A;  1B2H A;  3T66 A;  4PFW A;  4GF8 A;  3TCH A;  4FAJ A;  4DCX A;  1UIV A;  3I5O A;  4JSD A;  4ZEB A;  4XKP A;  4OFO A;  4QFN A;  3MVZ A;  1B1H A;  4GFR A;  5ISU A;  4QFP A;  1DPE A;  2B4M A;  1B3H A;  2OLB A;  3O9P A;  1B51 A;  3M8U A;  4XKR A;  2WOL A;  5ICQ A;  4OFL A;  4ZEI A;  3LVU A;  3TCF A;  3TCG A;  3CHG A;  4PFU A;  2D5W A;  3O6P A;  5F1Q A;  5L8D A;  4ZE8 A;  3MVY A;  3MVW A;  1RKM A;  1B9J A;  2RKM A;  3ZS6 A;  1ZTY A;  3DRH A;  5HM4 B;  3MZ9 A;  3TPA A;  3RQT A;  3PAM A;  1XOC A;  1B05 A;  4PFT A;  3RYB A;  1B6H A;  1B5I A;  4QFO A;  1B4Z A;  2WOK A;  2NOO A;  2B4L A;  4XKQ A;  4ZEK A;  4I8C A;  2O7I A;  4ONY A;  3RYA A;  1B3F A;  2GRV A;  4OEV A;  1B40 A;  1UQW A;  3DRG A;  4OES A;  1ZLQ A;  1B3L A;  1DPP A; 
#chains in the Genus database with same CATH homology
 4ZEC A;  5KZT A;  1JET A;  1JEV A;  3RY3 A;  1JEU A;  1B5J A;  1QKA A;  4JSO A;  4OER A;  1QKB A;  3QIM A;  4GL8 A;  3MZB A;  3E3K A;  1B3G A;  3MVX A;  4QFK A;  1B52 A;  1VR5 A;  1B4H A;  3FTO A;  1B58 A;  1UIU A;  4OFJ A;  1ZU0 A;  3DRI A;  3DP8 A;  3DRF A;  4I9D A;  4DCY A;  1B5H A;  1B0H A;  2WOP A;  3DRK A;  4QFL A;  4XKN A;  1B7H A;  3MW0 A;  1B46 A;  3DRJ A;  2Z23 A;  4WED A;  4ZED A;  4OET A;  1B32 A;  1OLC A;  4TOZ A;  4ZE9 A;  1OLA A;  4PFY A;  4OEU A;  4RA1 A;  1B2H A;  3T66 A;  4PFW A;  4GF8 A;  3TCH A;  4FAJ A;  4DCX A;  1UIV A;  3I5O A;  4JSD A;  4ZEB A;  4XKP A;  4OFO A;  4QFN A;  3MVZ A;  1B1H A;  4GFR A;  5ISU A;  4QFP A;  1DPE A;  2B4M A;  1B3H A;  2OLB A;  3O9P A;  1B51 A;  3M8U A;  4XKR A;  2WOL A;  5ICQ A;  4OFL A;  4ZEI A;  3LVU A;  3TCF A;  3TCG A;  3CHG A;  4PFU A;  2D5W A;  3O6P A;  5F1Q A;  5L8D A;  4ZE8 A;  3MVY A;  3MVW A;  1RKM A;  1B9J A;  2RKM A;  3ZS6 A;  1ZTY A;  3DRH A;  5HM4 B;  3MZ9 A;  3TPA A;  3RQT A;  3PAM A;  1XOC A;  1B05 A;  4PFT A;  3RYB A;  1B6H A;  1B5I A;  4QFO A;  1B4Z A;  2WOK A;  2NOO A;  2B4L A;  4XKQ A;  4ZEK A;  4I8C A;  2O7I A;  4ONY A;  3RYA A;  1B3F A;  2GRV A;  4OEV A;  1B40 A;  1UQW A;  3DRG A;  4OES A;  1ZLQ A;  1B3L A;  1DPP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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